Blg00180.3 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00180.3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:2595285..2598817+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00180.3 ID=Blg00180.3|Name=Blg00180.3|organism=Branchiostoma lanceolatum|type=mRNA|length=3533bp|location=Sequence derived from alignment at Sc0000026:2595285..2598817+ (Branchiostoma lanceolatum)
CAGCAGCTGGTTATATTACACCGAACGGTCTGTTACACCTAGTCTTTGCA TATCTGCCTGCAACCGTTCTTTAAAGCTACTTAGTGAAGATGCTCCTACA GTACTTGATGACAACGAGTTCCATTCTACTGTGATTCTCGGAAAATACGA ATTTATGAACACATCAATCCTTGGCTGATAACTCTGGTACTTAAAAGCAT GACTATTTCTTGTCCTCTTCTGAGCTGGCATTATATACTTATCAGTCGGT ACGTCTACAAGTTTATTAGTCATTTTGTACATAATGCAAAGTCTGGACGT TGTTATTCTGTATTCAAGTGACATCCATTGCGGATCTGCTTTCATTTTGG TGACACTAGCACCCCTGTCAAAGTTGTTCGTGCAGAATCTGGCAGCTTGG TTCTGCACCCTCTCCAGTTTATCTTTATCCTTCTTTGTGTATGGATCCCA AGCTGTTGCTTTGTTGTTAAGTGGTGACCTCAAGTAGAAAAAAACACACA CAGACGAACTAAACACAGAGGCTTAGTTAGAAATTTCCATCGACTAATAG ACTAAGAAACACAAAATATGACACAATTATAAGTTTTCCAATACCTAATG GCCATATTAACAAGTTTCGTTCCTCTTAGTCTCTAGCAAATTAGTAAAAA AAAAAACCTTTGACGAGCACACCGGATATTCAGAACGCTGACGACCTCTT TGAAATCAACCGGCTCCACTATCATGATTCACTCCCCTCTAGTACAAAAT GTACCTGTAAACGAGAAACTATTAGCAGTTCAGAAATAACAATATAGCCG GCCGTGCTAGGTACTCATTTCACCTGAGTCGAGTGAGGGAGGAAGTTGGT GCAAAGTGCCTGTTCAAAGGGAAGAATATTGGGATTGAAACCCGGTACTT ATAGATTTTAACTCAACAACCCTAACCATTGTTGTATCTATCTCAGGTTG GCATCTGCTTGGCTCAACAAGTTCGTTAATATGCCAGCACATAGCGGCAC TTTTGGCTGGGTCAAGGGCTTAAATAATCGTCTCAGAAGCTACCAAGATC TCAACCCAACAGACAAGGTATGAGACATTTCTTGATAATTAACGACATGA AAAATGAAGGTATAGTTTTTGGCGTGTCTGCCTGTGTATCTATTTTGTGT ATCTGTGTATGTTTCCGGATTTTGTAGTCAGCATAAATATATGATATTTG ATATGTGGGTAGGTCTTGGAAAGACAAAGTTCAAGGTCGATTTTGGGCCA CCTGGTATGTGACCTTGGTACTGCAGTAGAACTTGTTGTTTTTGTATCTT TTGTTCTGGACGTGCTATCTTTTTTTTTGTTAGTTAGCTTGTGATGTATA TAAGAAGTGGTGTAGGTTTGGGCCCCATAGCAGCTTGCTTTGGAACTGCT GGGGCGTTTTTGTCAAGGAATGAGTAATCCGCCACTTCATGGACGTCACA TTATGAAAATAGGACACATGACTCGATGAGTAGTGGATCGTAGGTTGCAG AAATCTTATGGAGTTTATTTAGGGATAGTTGTAATACCCTGGTGTCTATG ACTTCTTTTGCTCCTTCTAACATAAGAAAATGTATTTTATGTATTCTAGG TAAGCGAACTGAAGGAAGAACGGGCATTTGACGCTAAACAACCAGTGCCG TTCCGAAAGTTCCTTTTTGCCGTTTCGAAGCATCTAATGGAAAATGAGCA CTGGCTATCATTCAACAGGCTATGCCTACCATGCCAGGTACTTTGTCACA CTCACTCACTCACTCACTCACTCACTCACTCACTCACCCACTCACTCACT CACTCACTCACACACACACACACACTCACTCACTCACTCACTTACTCACT CACTCACTCACTCACTCACTCACTCTCTCACTCATTCACTCACTCACTCA CTTACTCACTCACTCACTCACTCATTCATTCACTCTCTCACTCTTTCACT CACTCACTCACTCACTCACTCACTCACTCACTCACTCACACACGAATATC AAGTTAAGGAAAGGCCAAGAAAATTAATGCTTCTTGTGTATATGAATTCT AATACAGATTTTCCCCACTAGGTTGACTACGACTTCATAGCCCACACGGA CACACTAGCTTCAGATGTTCGACTCTTTCTAAAGAAGAACAACATGACAG CGAATGAAGACGTTCTCCCTGAACAGCTGCCCAGAAACGCTAATGAAGAC AATGTTTTTAGCGACATCTACCGTCAAGTCCCAACAGAAGAAATACTCTC TCTCCGCGAGACCTTCCAAGAGGACTTTAACATGTTCGGATACTCTTTTG AACAAGATTTGGCAAAGATACTTACAGGAAAGGCAATGGGGTAGTCTCAA AGCTTCTTCGCCTTGGAATTGCACTCCTTTAGCAGCAACGACAACTGAGA CGGGCAAATGATGAAAGTGTTTCATCAACATATTTTGGCAAGTCCCGATA GAAGTAATACTGTCAATCCGGAAAACCTACGACGAGAAAGACGATTTGAC AAGAATACTCGTAGAAAGGGCACAGGGGTAGTTTAGTATGTTGACCTTGA TCTTAAAAAGGCTCATATAAGTCTCATTTGGTTGATTTTCTGTAATCATT TTCAGAACTTGATTTTATGTAAAGACAGAGACACTGTCTGTCTGTTTGTA CTACATTGTTTTCAATTGTTCCTTTATCTTTACTTCGCAAGTCAATTGGA AGGCAAAGCTATTTTATAGCTATTCTTTATACTTATTTAAACACTAGTTT GATTTTACATTGAATGATCTATGTTGGTAGAAGGGATTATCCACGCAAAA TCATTAAAGAAACTTGTCAATAGTAATTGTTAACGTTATCACACTTGCAT TCTCAGTTTTGGAGAGGCCAACGAAAGACAACAAGGTTCTGACCTCCCCT GTCCGCTTTTCATTGCTATCACGTGCGAATGAACAATATGCAAAAATAAG AATATATATACAATTTAAGAAGTGATGATTTGTGTCAAGTGGAATGCTTG CCTATGTGTGAAAACAGAATAGGATCTATCTGTTCCCGCCTGTCGTCACA AAATTGCCGATAATATGTCATCTAAAAGTATTGAATTATGCATATGGCGG ACGACATGAACTCCATAGGAAATTAAAGTGAGATGCTTTGTAGAAGTGAA TGCCCTGCCCTATTGGACTACCGGCAGCCGTGTCAGTAAAGACGAGTTAA ATCTTTGCGGAAACTAGTAGTATAAGTGATATGTTAATTTCGAAATGTTG AATTACCCATATACATGTACATGCGCGTAGGTTAATTCCTTTGTTTACAT GTTTAGTTGTAGAAGACCTCACGAAAGACTCCTGTACTTTTGTTCAGTTA GTATAATAAAGATTGTCAGGTCTTTATAAATGAAGGGCAAAAAAGGGGAG AAGAAGAATAGTAGGAAGATGTCGTTATCATACCTGCATACAAAGCTGTA CGTGCATGGGGTATCAACCAGATGAAGAACACCGATATGTTAAATCTAGA CAGAGACAGAGTACTGGAGATTCTTTTTACACA

Coding sequence (CDS) from alignment at Sc0000026:2595285..2598817+

>Blg00180.3 ID=Blg00180.3|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=498bp|location=Sequence derived from alignment at Sc0000026:2595285..2598817+ (Branchiostoma lanceolatum)
ATGCCAGCACATAGCGGCACTTTTGGCTGGGTCAAGGGCTTAAATAATCG
TCTCAGAAGCTACCAAGATCTCAACCCAACAGACAAGGTAAGCGAACTGA
AGGAAGAACGGGCATTTGACGCTAAACAACCAGTGCCGTTCCGAAAGTTC
CTTTTTGCCGTTTCGAAGCATCTAATGGAAAATGAGCACTGGCTATCATT
CAACAGGCTATGCCTACCATGCCAGGTTGACTACGACTTCATAGCCCACA
CGGACACACTAGCTTCAGATGTTCGACTCTTTCTAAAGAAGAACAACATG
ACAGCGAATGAAGACGTTCTCCCTGAACAGCTGCCCAGAAACGCTAATGA
AGACAATGTTTTTAGCGACATCTACCGTCAAGTCCCAACAGAAGAAATAC
TCTCTCTCCGCGAGACCTTCCAAGAGGACTTTAACATGTTCGGATACTCT
TTTGAACAAGATTTGGCAAAGATACTTACAGGAAAGGCAATGGGGTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00180.3Blg00180.3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00180.3-exon-Sc0000026-1570713199:2595285..2596351Blg00180.3-exon-Sc0000026-1570713199:2595285..2596351Branchiostoma lanceolatumexon
Blg00180.3-exon-Sc0000026-1570713199:2596884..2597021Blg00180.3-exon-Sc0000026-1570713199:2596884..2597021Branchiostoma lanceolatumexon
Blg00180.3-exon-Sc0000026-1570713199:2597356..2598817Blg00180.3-exon-Sc0000026-1570713199:2597356..2598817Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:2595285..2598817 +
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00180