Blg00180.1 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00180.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:2591157..2598817+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00180.1 ID=Blg00180.1|Name=Blg00180.1|organism=Branchiostoma lanceolatum|type=mRNA|length=7661bp|location=Sequence derived from alignment at Sc0000026:2591157..2598817+ (Branchiostoma lanceolatum)
GAACCCTACGGTAGTTGGAACCGGAGATGGGCATAAATGGTGTGGGAAGA ATTGCAACTTTTACCTAACATTGTCAGGGCCGTCTGGGTTGAAACGTGAT CCAGTCCAACAGAGTTTTTCTTTCTATTTTTTCAGGTGAATCCATCGCAA GCACGCCTTGGCAGCCACCTTTTCGTTTTTGAAAATATCAAAACGATCTA CTGCTTTGTCCCAAAGTGTGCGTGCAAAACTATGAAACTGTTACTGTACA ATCTAGAGAACAATAAAACTGCTCGTTTGATGGATGTTAATAGAGCTCAA TTCTTAGAGAACATAAGTAACTATTCGGCAAACGACCACCATAGTGGTTG GATCCATGGGCAACGTTTTAAAAAACTAACTCACTACAGCAAAGAAGAAG CAAGTATGCGCCTTGCGACCTACAAGAAAATCATCGTGGTCCGCGANATG CTCCTTGCGACCTACAAGAAAATCATCGTTGTCCGCGACCCGTTAGAGAG GTAAGTATAAATACACTTGCCAAGAAGGTTATGTTTTTGGTAGCGTTTGA GTATGTGTTTGTATGTATTACATTAGTATATACACTCAGCACAAAAATTT GGAAACTTAACTTTGGTCGATCATATCTCCGCTGTTACTTGATTAATTTC AATGATTTATATATCATCACAGAGCTTGTGCGATTTTCTTTCCCATGATA CCAAAACTAATATGGTTGTAAATTAATGCAACGAGCACCAGACCTGCTTA TGTGAGCGGATCACATAAAAAAGAGCCCAGATTACCCTACTAATGTCAAA CGCTCAATTCACTGTTTTTTTTATTCTGCTGGTAGCACATAGCTTTTGTA CGAGGGTGATATGAAACTTAAATCAACAAAACACATTAATATGAAAGACA AGGATAGTCTTCATCCAAAAATTAAATGCGTAATGGAGCCTCAGTTATGA TGAAGGTGGCTTAATACTGAATACACACGCCATGCGCTGTCACCACAGCC CGGTACATCCTCCTCATAATTGTCACCAGTTTTGTTACGCGGTCCCTGGA CATTCTTCCACGAGGAGTCGTTGCAGGTCGACCAGTGAATCTGAGACTGT GTTCAATGGTGTTGAGATCTGGGCTACAGGAGGGCCATTCTATTATCTGT ATTCCTGCCTACTGGAGGTGGTCTGAAATGGCTCTCATTCTGTATGAACA TGCACAAATCTTGCAGAATGACACCCAGTCTCATATTGCAGAGTTAGAGA TCTAGGGAATGTGACTGGATGGAGAAAGGTGTCTCTATATCTTAAACAAA CAAATATAAATTATATATTATTATTATAAAACTTATATAAAACAAACAAA CAAACAAACAAACGAACAAACAAACAAACAGTCAGTCTATGATAATAATA ATAATAATAAGGGGTTTATTCATTGAACACCTTGTAGCCTGGGGGCTGAA TTACATGTTCATTACAAATTACAAATTACACATAATAAAATACTTAAGGC TATAATGGTTACATTAAAAGGTTGCGTACCGGACTAAGACTAAACTGCAC GTATTAGCAAGTAACATGAAATGGTGGATCAATTAACTGCCTGGGTTACA CTGGGCCGGCCTTGTACTGGAATTACAATGAGGTATTCAGAAGATGGACA AGGTAAGGGATTGGGCTACCGGAATATCGTGCAGTGCGGACTGGCAACTG GTCAAGTTTCTTTTTCTGCCTAGTCTCCCGGCCACTTATCTCTCCCCTCG ACCGCGGAAGCCAATGTCTGTACTGCTCAGACATGTACAACTTCTGGGCA AACCTCGGGCAAAGAGAAACACGACGGTTCTCGAGAGTTTGGAGTCAGAG GGCTTCACAGGCTGCGGAGTAGCTGTGGAAGTTCTTGCCAAGGATGATTT TAGTTGCACGCACTTGGATGTTCTCAATCTTCCTCCGTTGGCTGTTTGTT AAGCCTGGGTGCCACAGTCAGCATAGGGTTCTCCTCACTGGCCCCACAGT TTCATTTACCCGAGGCATCCAACAGTCGAAATAAACCTTACTTATCTGAA GCTGTGAACACTATTCCATTCCCAATGTGGACGACACCACCACCCTGCGC TGAGTGTTAATTGACACTAACATGGGAATTTGGGCACTTTTCTTCTACAA CCCACTCGCGTAAGCAGGCCTGGCGCTCGCTTCATGAGATTGCAATTATA ATGACTTGTGTATCATAGGAAAGGAAATTATACAAGCTTTCCAACAATAT CTAATGCATTGAAATTGGTCAGGAAACAACGGATATACGATCGACTAAAG TTAAGTTTCCAAACTTTTTGTGAAGTTTACATTATTCACACAACTCATAA CTTTTCGTTGATTACCTTTGCCAAGAAGGTTTTGCTGAGCGTAAATTTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTACGCGTGTGT GTGTGTGTGTGTGTGTGTGCGTGTGTGTTTGTGTGTGGGGGTGTGTGGGA GTGGGTGTGTTTGTGTGCCTGTGTATGTACACGATAACTCGACAATGCCT AGATGGGTTGTCTTGATATTTGGTCTATCGATAGGTTTTTATACAATCTC GTAACGATTACATTTTGGGTCCCATAATTTGCATAATCAATTAGGAAAGT TTAAAAATCCGCTATATTGCATGATAAGACTCCCTAACATGTGGCACCTA GTACCCGTCAGTTGACATACTTGGGCAAATATTCCCCTGCTTGCAGGACC TGACCCCAGGGGCCCTACTGTAGGGCTAAAGTGGTCAAAACACAAAGGGA TACCAAGAACCCGTATACAACTTGTTTTTGATATAAGGACAGCTTAAGTG ATGCTTGATATAAATTTTACAAAACGACTGCATCCTATGATAGGACTTTA AAAAATGTAGCATATGTAACTGAGAAATAGAAGGACATTGATAGATAAAA ATTATGCAAATGAAGACCTGATCTACCTTAAGGTATGAGGTCGTGGAACT CTAGTTTTGTCATGGGAAGAGTGGTTCAGTTCTTTTTAAACCAATTGTGC AAGTTATAGAAACATTGATTAAAAATATCACACACAGGTATTTGTAAACA TTCTTTGTAAACGGGCCTTCTATTGGGTGCATAAGGTACTGCAGCGGAGC TTCAAAGGTTGAGGTCAAATTTTCTGCAAGTGCTACGGTCATGACTTTTG TGTGGTAGATAGCTCATGTCGCTGAAAGTAAGCTGTGTACGTTTGCTCTT TCTGGCATATCTTATCAAGGATATTCTCCTTTACTTAAAGCCATAGACAA GACCAGCGAGAGTGCTCTAGTTCGGATGATAATATTCTTCCGAATCCAAG AACGTCATTGTATTGGCAAATTGACCTTGGACCTGGACTTGGCAGCAGTT GCATAATACAGCTAGCATCAATATTCTGATAATCCCCCGAGTACCATTCA GAGCAATTACAGCCAGGTTTAACGTTATATCGTGAACAACCATTAGACAA ACTGCAACTTGTTGGCTCTGAAGAAACCTTGGGTTAAGCTTAAAATTACC TTTGCAATTTGTTTCCTGATGCTTGTTTGTCAACTTATTGCTTTAGTAAC TGTATTTTCCACTTGCTTTGGGTCAAAAATGGACTTTGATCTTTGTCAAT CATCCCATTGAAACCAATACTTAAGACTTGAAAAAAAAAATGCTCTTAAG AAATCTAGTTTCGATGTTGAAAATAACGTTTGAAGCGTTTGTGTGAATAG TTGTTCATCAATTCTCACCCTTAGCAACTTGATTCTTCTATTCATTTGAC CCAAACATTGATCTGAAACTTCAACAATTATTCCATAGTAACCAAAAGGC CACAGCAAGTAAAGTAAAAAACAAGATTTGTTTTAGCCTTCGGCAATGGT CATGAAAATGAAAATGGCTCATGCGAAATCTTTATTGAATTGCCCTCGTC TCAATCAGTATGTTTATGACTTATCATAGGGAGAAGTAATGGTGTTCAAT TCCTGATTTCTTTCCTATGCATGTAACCCGAAAACCCTGATGTGGTCTTC AGATCTGTATCTATATCTATATAGTCGGTACAACCGCCATTAGGCGTGAC ACACCAGCTTCGCAGGCACGCGGCGCGGCAGCAGCTGGTTATATTACACC GAACGGTCTGTTACACCTAGTCTTTGCATATCTGCCTGCAACCGTTCTTT AAAGCTACTTAGTGAAGATGCTCCTACAGTACTTGATGACAACGAGTTCC ATTCTACTGTGATTCTCGGAAAATACGAATTTATGAACACATCAATCCTT GGCTGATAACTCTGGTACTTAAAAGCATGACTATTTCTTGTCCTCTTCTG AGCTGGCATTATATACTTATCAGTCGGTACGTCTACAAGTTTATTAGTCA TTTTGTACATAATGCAAAGTCTGGACGTTGTTATTCTGTATTCAAGTGAC ATCCATTGCGGATCTGCTTTCATTTTGGTGACACTAGCACCCCTGTCAAA GTTGTTCGTGCAGAATCTGGCAGCTTGGTTCTGCACCCTCTCCAGTTTAT CTTTATCCTTCTTTGTGTATGGATCCCAAGCTGTTGCTTTGTTGTTAAGT GGTGACCTCAAGTAGAAAAAAACACACACAGACGAACTAAACACAGAGGC TTAGTTAGAAATTTCCATCGACTAATAGACTAAGAAACACAAAATATGAC ACAATTATAAGTTTTCCAATACCTAATGGCCATATTAACAAGTTTCGTTC CTCTTAGTCTCTAGCAAATTAGTAAAAAAAAAAACCTTTGACGAGCACAC CGGATATTCAGAACGCTGACGACCTCTTTGAAATCAACCGGCTCCACTAT CATGATTCACTCCCCTCTAGTACAAAATGTACCTGTAAACGAGAAACTAT TAGCAGTTCAGAAATAACAATATAGCCGGCCGTGCTAGGTACTCATTTCA CCTGAGTCGAGTGAGGGAGGAAGTTGGTGCAAAGTGCCTGTTCAAAGGGA AGAATATTGGGATTGAAACCCGGTACTTATAGATTTTAACTCAACAACCC TAACCATTGTTGTATCTATCTCAGGTTGGCATCTGCTTGGCTCAACAAGT TCGTTAATATGCCAGCACATAGCGGCACTTTTGGCTGGGTCAAGGGCTTA AATAATCGTCTCAGAAGCTACCAAGATCTCAACCCAACAGACAAGGTATG AGACATTTCTTGATAATTAACGACATGAAAAATGAAGGTATAGTTTTTGG CGTGTCTGCCTGTGTATCTATTTTGTGTATCTGTGTATGTTTCCGGATTT TGTAGTCAGCATAAATATATGATATTTGATATGTGGGTAGGTCTTGGAAA GACAAAGTTCAAGGTCGATTTTGGGCCACCTGGTATGTGACCTTGGTACT GCAGTAGAACTTGTTGTTTTTGTATCTTTTGTTCTGGACGTGCTATCTTT TTTTTTGTTAGTTAGCTTGTGATGTATATAAGAAGTGGTGTAGGTTTGGG CCCCATAGCAGCTTGCTTTGGAACTGCTGGGGCGTTTTTGTCAAGGAATG AGTAATCCGCCACTTCATGGACGTCACATTATGAAAATAGGACACATGAC TCGATGAGTAGTGGATCGTAGGTTGCAGAAATCTTATGGAGTTTATTTAG GGATAGTTGTAATACCCTGGTGTCTATGACTTCTTTTGCTCCTTCTAACA TAAGAAAATGTATTTTATGTATTCTAGGTAAGCGAACTGAAGGAAGAACG GGCATTTGACGCTAAACAACCAGTGCCGTTCCGAAAGTTCCTTTTTGCCG TTTCGAAGCATCTAATGGAAAATGAGCACTGGCTATCATTCAACAGGCTA TGCCTACCATGCCAGGTACTTTGTCACACTCACTCACTCACTCACTCACT CACTCACTCACTCACCCACTCACTCACTCACTCACTCACACACACACACA CACTCACTCACTCACTCACTTACTCACTCACTCACTCACTCACTCACTCA CTCTCTCACTCATTCACTCACTCACTCACTTACTCACTCACTCACTCACT CATTCATTCACTCTCTCACTCTTTCACTCACTCACTCACTCACTCACTCA CTCACTCACTCACTCACACACGAATATCAAGTTAAGGAAAGGCCAAGAAA ATTAATGCTTCTTGTGTATATGAATTCTAATACAGATTTTCCCCACTAGG TTGACTACGACTTCATAGCCCACACGGACACACTAGCTTCAGATGTTCGA CTCTTTCTAAAGAAGAACAACATGACAGCGAATGAAGACGTTCTCCCTGA ACAGCTGCCCAGAAACGCTAATGAAGACAATGTTTTTAGCGACATCTACC GTCAAGTCCCAACAGAAGAAATACTCTCTCTCCGCGAGACCTTCCAAGAG GACTTTAACATGTTCGGATACTCTTTTGAACAAGATTTGGCAAAGATACT TACAGGAAAGGCAATGGGGTAGTCTCAAAGCTTCTTCGCCTTGGAATTGC ACTCCTTTAGCAGCAACGACAACTGAGACGGGCAAATGATGAAAGTGTTT CATCAACATATTTTGGCAAGTCCCGATAGAAGTAATACTGTCAATCCGGA AAACCTACGACGAGAAAGACGATTTGACAAGAATACTCGTAGAAAGGGCA CAGGGGTAGTTTAGTATGTTGACCTTGATCTTAAAAAGGCTCATATAAGT CTCATTTGGTTGATTTTCTGTAATCATTTTCAGAACTTGATTTTATGTAA AGACAGAGACACTGTCTGTCTGTTTGTACTACATTGTTTTCAATTGTTCC TTTATCTTTACTTCGCAAGTCAATTGGAAGGCAAAGCTATTTTATAGCTA TTCTTTATACTTATTTAAACACTAGTTTGATTTTACATTGAATGATCTAT GTTGGTAGAAGGGATTATCCACGCAAAATCATTAAAGAAACTTGTCAATA GTAATTGTTAACGTTATCACACTTGCATTCTCAGTTTTGGAGAGGCCAAC GAAAGACAACAAGGTTCTGACCTCCCCTGTCCGCTTTTCATTGCTATCAC GTGCGAATGAACAATATGCAAAAATAAGAATATATATACAATTTAAGAAG TGATGATTTGTGTCAAGTGGAATGCTTGCCTATGTGTGAAAACAGAATAG GATCTATCTGTTCCCGCCTGTCGTCACAAAATTGCCGATAATATGTCATC TAAAAGTATTGAATTATGCATATGGCGGACGACATGAACTCCATAGGAAA TTAAAGTGAGATGCTTTGTAGAAGTGAATGCCCTGCCCTATTGGACTACC GGCAGCCGTGTCAGTAAAGACGAGTTAAATCTTTGCGGAAACTAGTAGTA TAAGTGATATGTTAATTTCGAAATGTTGAATTACCCATATACATGTACAT GCGCGTAGGTTAATTCCTTTGTTTACATGTTTAGTTGTAGAAGACCTCAC GAAAGACTCCTGTACTTTTGTTCAGTTAGTATAATAAAGATTGTCAGGTC TTTATAAATGAAGGGCAAAAAAGGGGAGAAGAAGAATAGTAGGAAGATGT CGTTATCATACCTGCATACAAAGCTGTACGTGCATGGGGTATCAACCAGA TGAAGAACACCGATATGTTAAATCTAGACAGAGACAGAGTACTGGAGATT CTTTTTACACA

Coding sequence (CDS) from alignment at Sc0000026:2591157..2598817+

>Blg00180.1 ID=Blg00180.1|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=801bp|location=Sequence derived from alignment at Sc0000026:2591157..2598817+ (Branchiostoma lanceolatum)
ATGAAACTGTTACTGTACAATCTAGAGAACAATAAAACTGCTCGTTTGAT
GGATGTTAATAGAGCTCAATTCTTAGAGAACATAAGTAACTATTCGGCAA
ACGACCACCATAGTGGTTGGATCCATGGGCAACGTTTTAAAAAACTAACT
CACTACAGCAAAGAAGAAGCAAGTATGCGCCTTGCGACCTACAAGAAAAT
CATCGTGGTCCGCGANATGCTCCTTGCGACCTACAAGAAAATCATCGTTG
TCCGCGACCCGTTAGAGAGGTTGGCATCTGCTTGGCTCAACAAGTTCGTT
AATATGCCAGCACATAGCGGCACTTTTGGCTGGGTCAAGGGCTTAAATAA
TCGTCTCAGAAGCTACCAAGATCTCAACCCAACAGACAAGGTAAGCGAAC
TGAAGGAAGAACGGGCATTTGACGCTAAACAACCAGTGCCGTTCCGAAAG
TTCCTTTTTGCCGTTTCGAAGCATCTAATGGAAAATGAGCACTGGCTATC
ATTCAACAGGCTATGCCTACCATGCCAGGTTGACTACGACTTCATAGCCC
ACACGGACACACTAGCTTCAGATGTTCGACTCTTTCTAAAGAAGAACAAC
ATGACAGCGAATGAAGACGTTCTCCCTGAACAGCTGCCCAGAAACGCTAA
TGAAGACAATGTTTTTAGCGACATCTACCGTCAAGTCCCAACAGAAGAAA
TACTCTCTCTCCGCGAGACCTTCCAAGAGGACTTTAACATGTTCGGATAC
TCTTTTGAACAAGATTTGGCAAAGATACTTACAGGAAAGGCAATGGGGTA
G
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00180.1Blg00180.1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00180.1-exon-Sc0000026-1570713199:2591157..2591656Blg00180.1-exon-Sc0000026-1570713199:2591157..2591656Branchiostoma lanceolatumexon
Blg00180.1-exon-Sc0000026-1570713199:2596231..2596351Blg00180.1-exon-Sc0000026-1570713199:2596231..2596351Branchiostoma lanceolatumexon
Blg00180.1-exon-Sc0000026-1570713199:2596884..2597021Blg00180.1-exon-Sc0000026-1570713199:2596884..2597021Branchiostoma lanceolatumexon
Blg00180.1-exon-Sc0000026-1570713199:2597356..2598817Blg00180.1-exon-Sc0000026-1570713199:2597356..2598817Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:2591157..2598817 +
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00180