Blg00175.0 (mRNA) - B. lanceolatum

Overview
NameBlg00175.0
Unique NameBlg00175.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:2408477..2414913+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00175.0 ID=Blg00175.0|Name=Blg00175.0|organism=Branchiostoma lanceolatum|type=mRNA|length=6437bp|location=Sequence derived from alignment at Sc0000026:2408477..2414913+ (Branchiostoma lanceolatum)
GTTCACTTTGTTGTGTTTGAGTAAATAAAGGACAACTCCAAGGAGTCAAA AAGAGAAGAACAGTCAACGAGACACAGCGGGCATTGCTGATTGGAGACCG AGCGCGGACAATACATTCATAGTCTGTAAAATAGAACACAGCCAGGTACG ATCTTCATGTTTTGTTCGTTTATTATTTGGTAAATACAGTCGTTCTTCTG TACTACATATGTATTCGTATCTGTAAAGCTGGTATACGGGCCAAGGACGT TACGCACCAGCTACGCTGCTTAGATACTAGTGTATTTACTCTTGTGTCAT TATCTTCACCAAGAAGGTTAATATGTATTCGGTGCTGTATGTCTGTGTGT GTGTGTGTGTGTGTGGGGATGCGTGTATGTGTGTGTGAGTGAGAGAGAGA AAGAGAGTGTGTGTTTGTGTGTGTGTGTGTGCATGTGTGTGTGAGTGTGT GCATGTGTGTGTGTGTGTGTGTGCGTGTGTGCATGTGTGTATGTGTGTGT ATGTGTGTGTGTGTGCATGTGTGTGTATGTGTCTGTGCATGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGAGAAACTGTTTGCTTGAGTAACT GTTACCTTGCGTATTATATTACCTGGATGTCTAACAATCGAAGTGTCAGC ATATGTCACATTGAGATGATAGAATGATATGACAATACACTAACAATGCA GCAACATTAGAAACTAGTTCTTATACCTAATTCTTAATAACGCATTGCAA TTTACGCTAGCTTTGTTAAATGAGCGAGACCTTTATTCTGTTATGTGTGG GTTCCATGACTTAGCTGGTAGAATTGTTTCCTTGGTGTCAGAAGTAGGTA AAATATATTTTTGTAACGTTTTAACTACTAGAAATTAAAGGACCTCCCCC GCGGGCATTTGAAGAACAATATTTACAAAAATTTAATCCACTAAGACGCA GATTGTTTGATAATGTCTTGATTTTGATGCCAAATTGTTCTATCGATATG AGTAGGGTTTCATCCGAGTTTGAGTGAAACAAACCTACCAGTCCGGTCTT ACGCAGTTTGTACCTACTGTACAAAACTAGTGTGTAACGCTTAATAGCTC GCTATGCATAACGGGAAAAGGTGTTCAGACCCTCGTTATAACAAGTATGC TTTATTGTATTTTTGTTTGTTTCAATGACATATAATAAGGAAATAAAATG TTGTTAACTTTCATGTGCATGTTCTATTTCATGTACCTTTTTAGTCAGAA CAATGGGTATTGTTGTTCCACAGGACCAACCTAGCAACAGACCTAGCAAC CATGGGTGCACAGTGTACAGGGGGCGAGGCAAACATAGAGGTGAGATAAA TCATATGATATTAGCATATGGTATAAATCAAAATACTGCATCTTTTACTA ATTCGTAGTCGCCCACACGGTTGTTTGTGTGTGAGTGTGTTTATGTGTGT GTGTGTGCGTGTGTGTAGGTGTGTGTTTGTTTGTTTGTTTGTGTGTGTGT GTGTGTGTGTGTGTGTGCGCGTGTGTGTGTATGTGTGTGTGTGTGTGCAC GGGGCAATAACTAAAGAACCTCTGTTTTGAGATGATATTTTATATGTGTG TACACACGATTGGCAAAATCGATTTGGGGCCTCCTGGCAGCTGATGTTGG CATTGCAGCAGAACTTCCGTTTTTCGTATTTTTTGTCATGGACATGCTGT TACTATTTTTTTCATATCTTATAAGAAGTCGAGTAACTTTTAAACACACA AAAAGCACACATGTAACATCCTGCTCCCAAGAAAATGGCTTTTTTTACCA TTACTTTAGAAATTAGTTGTAGGCTAAAAGCAAACCCCTTGGGCCTTCGC ATAACAATAGTACTGACATTTAACCAATAGGGTCGCAAGGACTCAGCACT TGTGAAAGCGAAGACGGGGAACTACCGAGGCGGGGGGACGGACGGAAACA TCTTCATCGCCCTGATTGACAGCGAAGGGAGGAAGTCACGTGACATCCAT CTTAACCTGCCGTGGGACGACTTCGAAAGGGGCACTGACCTTGAGTAAGT GGTATATTCTAGGGTTAATGACCCGACCTGAGGTGTTTCAGGTGTCATGA GGCATGGTCGCTTCCAATAACCATCGAATAAACTTCCGAGTTCGGGAAGG GAACAAGGTGGTTTATTGCGAGGTAGTTATAGGAACCGACCATGTCTTAA GACACCGTATACACCAAGGGGAAGCGGGTGATTTAAGTTATCATCATAAT ATAAACCTGACACAAGTAAGACACAGAATCTTACACACCTTGCCGCTATT TCCTGAACTGGTCTGCTGTTTCCCAATCTGCAAAGTATACTTTGTTAGAA ATAATTTTTGAACTCCTTCCATTTTAGCACGACCTAACAAAACAAATATG GCTGCCTTGGTTTCAGCTCTGAGGGCTGACACGGCGTGCATGCCTGAAAA TGCCAGCCGCATTGCACTATTACTGAAAGTAGATGTTAGTTAAAGTATCC TGCTTCATCTTTGTTAAGTGCTGTTAACATTAGTTGACGATGCCTGTTTT GTCTTGCTTTAGGCTCACAGCGGATGACATCACAGTCCGTCCGCCGCTCC GTGATTTGGAGGTGTGGCGAGACGACAGCTACCCTCACGACAATTGGTTC TGTCAATCATTCTCTGTGAAGCTGCACTCGGACCGTAACGGCCGCACGTA CGACTTCCCTGTCGACCGATGGATCAAAGCAGGTCGGTGGATTAAATTTC GTAGATCTAAGGGCAGGGGTTCGATCCCAGGGTCGGGCCTAGCCGGGACA TGTTGTGGGAGATTGCATTCGTGATTATGGATGGTGATGTAAAGCCGATG GCCCTTTGTCATCTTTCCGAACCGGTGCCGTGTTATATTGTTTGCGGGAA CGAAATTGAAGCGTCAAGAATTATACACAAATTATGCTCATGGCGTTTTT TTACGTTTTGCGTGTCTTGGTTTATCATGTCATAATTTTCGTTCCCGTTA TCTGGCCGGCCGGGCGCTGGTTTTCAAAATGTGATCCAAGCATGGAAGGA AGGCTTACGGATAAGCCTCGGTCGTAAAACCTCTTTTTTTTTATATGTTC TTTTGTTCCTCGCGTTATTACCTCCGGGAAGAAGGTTCACCTCTAAATGG GGTACTGTTTCTGTGCCCGCATCTATAACTCAAGATCATCTAAATGGATT TGTTTCCATTTCGGTATGTTGGTATTTATCAAGGTCCATATAAAGCGGAG TAATTTTGGGCACCGTAGCAGTATTTTTGTTTATGAAAACGCAATTTAAA AGTTATGTGTCGCTTTTTGTAGGTGAACGAGTATGGGTGCCCCCTGGCGG TGCAGTACTGCCCCAGTACGACCGACACGCAGTGAGCCGTGAGAAGGAGC TGCAGGACATGAAGAAACGTTACGCCTCCTTCACTCCTTCCCCAGGCCTG CTGCCCATGGTACGATTACAGACCGATCTGGTTGTCAATCAAAATTAGCG ATTCGGCCAATAAGTTGAATAACAGGGCGGGATTTGGTAACGTGATCATC ATTGGGTGTATCCGCCTTAGTATCCGCCATTTTGTCCATAGAGTTGCTAG GGTGTTGCTAACAGAGCGTGGATTCCGGAACAGGTTATTTGCCACCGACA AGGCGGTTATGTCTTTGGTAAGCGTTTGTTCCTTTGTTTGTTTGTTCATT CGTTCGTTTGTTTGCTTGTTTCTTTTTGACTGTGTTTATGGTTTAGTGTG TTCGATTATGGGTCTCGTAATGGCTTCCTACAGTGCTGCAGCGGAACTTT GGTTTTAAAATTTCCGTTACTGATGATCAACACGTTATGGTCACGATGCT TCGGACTGGCAAATGAATGGTGCTAGTTTTGACCCACTATCGGCTTTCCT TACAACTTCAGGCTTGTTTTTGTCCTAAGCTTTGAAACGAGAAAACAATG GATATTTATATTTTACTACATGTACTTATCATTTTCTACCAGCTTTCAAT TGCAAACGCAACCGTCTGGATGCATAAGTTTGGCTTGGTATGTGATATCA CAAAGCCATTATGTACTTAGCCTTGTTGCTGTTGACCTAAATGTGTTTTT CATTATGTTTCGCGCATTTAGTTGGCAAAACTACCTCCGGAGGACGAGTT TTCAACCCGACAGAAGGTACACATCTTTCTAAATCATTCTATCAAGTCCG ACCGCTCTGAATTCAACTGGCTCCATTATCACACCTTACTCCAATCTAGC AGCTGTGAAAGAGAAACTGCTAAAAGTTTGGAAGGCATGTGACTTATAGA GATGTAACTTAAAGGAAACCCCCAGCAATATTGGGGCCCGAAAATTGGAG TTTGAAAGTCAATTTATTTTGTGATTTCTATACATGATTAGTTCAAACAA CGCTATCACATGTTATAAATATAGCGACGTCCATGATGCAAATATACGAC ATCGTTGTGATGTGACAACTCACTAAAAATCGTCGCCGGGGTTTTTGTAG GATCGCGAAACTAAGAGGATCATCATAAGGCACATTTATGCGCGGTTTTA GAATGCTCAAAGTATGAAGTTATTACAGAAATATGAAGTTATTACAGAGT TAGTAAATGGCCCTGGCAAAAAGAATTCAGCATTTTTTCTAAATTTCTAT TTTCTTGGCCCTAATATTGCTTTAGTTGCCTTTAAAGACATTGCCATGCA TGCGCTGGATAATTTCATTTTCCAACAATAACTCAAAGTGGTTCAGGGCA AATCTTTGTTCAGCGACTCTCATATTTTTGATTTGATTTTTGATCCTTTG CCTTTGCGAACACATTTGCAGAAATCCATGATTACGACGGGGATCACACT CAGCGTAAAGAATTTGCCGATCGTCATTGACGACGGGAGGTGGGAAACAT TCGAGGGTATCAACGAGGTGTTCGAAGAAGGCAGAATCCCGAAAGTGAGG AAATCTCGCGGTAATCTCGCGAGACGTTAACACGATCCTCTCTTTCGAGA TTATCATCATTTATCGTGAGATTATCATCATTTATAAACTAATTTCCTTC AATCTCCGTTATAAAATGTGCACTTGTCTGAATGATTTGAAACTTCTGAT CAAGTTATTTTGAATAAATACTTGTATATTTCGCTCAAGGGAAAAGCCAA CTGGCAAACTGATGAGCATTTCGGCGCTCAGCGTCTTACTGGAGTCAACC CAACATCCATTCGCTTGTGCACGGAGATCCCGAGGGCGTGAGTATGGATC GTTTTCACTTACTTGCCATTTGACTAAAGCAGGTGTTCACAAGTGCTTAC CGCCATGTTGGCGTCCCTTGCATTTCAGTCGATTGTTTTAAAAAGACATA CGCACGTATATTTGAGAGAGCCTGCAATAGATCTTGAACCTGATGCGATA TTCACAACATCGGCTGCAGTAAGGTCCAAATGCCTTTTCGTTGTAGCAGA TACCTGAATGACCAGGGGTATATATAGATAATCTTAGTCGCACCTTTGAG TACTTTCAGTTGGTGGATCTCTTTAGCCAAAACGTAGTACCAATTTGTCT CCACAGTTTTGGCGTAACGTCGCCGATGGTCGAACCTTTCCTGCACGGCC TGACCCTGGACGCGGCCATGCAGAGGCGGCGTGTGTACATCGTGGATCAC ACCGACATGAAGATATCGTCATTTGCGTCGGACAAACCTGTGAGTCCAAT TCATTTCATTTTCATTTCACTTTATTTATTCAGGGATAATACACTCAGCT CAGCCTTCTTTAATGTGTGCAATATTTGCTTCAGACTAAACTGGACAAAA AAATACACACAAAAAATACAGGTCCCATAAAACCAAACAAGAAAACTATT ACAGTATCAGTCTTTACCAAATAACAACCCTTACTACAAAATGTATATTC AAATATGCAAAGTTTGCATTGATTATATTTTGTGAACGATCGAAGGACTA AACTTTCCAACCTTGGGGATTGGGACGTACTCAAAATTTTGACATAACTT CATCAGCCTAGTTCAAGGAATGGACCCGTCTACCCCTGTCTGCTGCAATT TGTGACTGCAGCAATGGGTCGTAAGTGCCAGATAGCCTATGTCACCCCCC GTCTCTGTTCAAAGTCGGACAATGGGTCGGGTTATATTTTGTTGCACATA GAGTAGACTGAGCCACCACTTTGTTCAAAGTTAAAGGGGGCACCCAGTAG TCTGAAAATGCAACAAATGAATAGATAGAAATAGATATCTTTTATATCAA AATGTTTACCCTCATTCCATAGATGTGTGCTCCGTATGGACTGTTCTTTG TCAACGACAGTGGTGACCTGGTTCCTGTGGCCATCCAGCTGTACCCTAAC GGGGAAGAGCAGAACCCGGCAAGCTTTTTTTTTCAATATCTATTCAAAAT CCAGAGGGATATGGCCTCCCTGCATCTCAACTGGTAG

Coding sequence (CDS) from alignment at Sc0000026:2408477..2414913+

>Blg00175.0 ID=Blg00175.0|Name=Blg00175.0|organism=Branchiostoma lanceolatum|type=CDS|length=1029bp|location=Sequence derived from alignment at Sc0000026:2408477..2414913+ (Branchiostoma lanceolatum)
ATGGGTGCACAGTGTACAGGGGGCGAGGCAAACATAGAGGGTCGCAAGGA
CTCAGCACTTGTGAAAGCGAAGACGGGGAACTACCGAGGCGGGGGGACGG
ACGGAAACATCTTCATCGCCCTGATTGACAGCGAAGGGAGGAAGTCACGT
GACATCCATCTTAACCTGCCGTGGGACGACTTCGAAAGGGGCACTGACCT
TGAGCTCACAGCGGATGACATCACAGTCCGTCCGCCGCTCCGTGATTTGG
AGGTGTGGCGAGACGACAGCTACCCTCACGACAATTGGTTCTGTCAATCA
TTCTCTGTGAAGCTGCACTCGGACCGTAACGGCCGCACGTACGACTTCCC
TGTCGACCGATGGATCAAAGCAGGTGAACGAGTATGGGTGCCCCCTGGCG
GTGCAGTACTGCCCCAGTACGACCGACACGCAGTGAGCCGTGAGAAGGAG
CTGCAGGACATGAAGAAACGTTACGCCTCCTTCACTCCTTCCCCAGGCCT
GCTGCCCATGAAATCCATGATTACGACGGGGATCACACTCAGCGTAAAGA
ATTTGCCGATCGTCATTGACGACGGGAGGTGGGAAACATTCGAGGGTATC
AACGAGGTGTTCGAAGAAGGCAGAATCCCGAAAGGAAAAGCCAACTGGCA
AACTGATGAGCATTTCGGCGCTCAGCGTCTTACTGGAGTCAACCCAACAT
CCATTCGCTTGTGCACGGAGATCCCGAGGGCTTTTGGCGTAACGTCGCCG
ATGGTCGAACCTTTCCTGCACGGCCTGACCCTGGACGCGGCCATGCAGAG
GCGGCGTGTGTACATCGTGGATCACACCGACATGAAGATATCGTCATTTG
CGTCGGACAAACCTATGTGTGCTCCGTATGGACTGTTCTTTGTCAACGAC
AGTGGTGACCTGGTTCCTGTGGCCATCCAGCTGTACCCTAACGGGGAAGA
GCAGAACCCGGCAAGCTTTTTTTTTCAATATCTATTCAAAATCCAGAGGG
ATATGGCCTCCCTGCATCTCAACTGGTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00175.0Blg00175.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00175.0-exon-Sc0000026-1570713199:2408477..2408621Blg00175.0-exon-Sc0000026-1570713199:2408477..2408621Branchiostoma lanceolatumexon
Blg00175.0-exon-Sc0000026-1570713199:2409750..2409816Blg00175.0-exon-Sc0000026-1570713199:2409750..2409816Branchiostoma lanceolatumexon
Blg00175.0-exon-Sc0000026-1570713199:2410357..2410520Blg00175.0-exon-Sc0000026-1570713199:2410357..2410520Branchiostoma lanceolatumexon
Blg00175.0-exon-Sc0000026-1570713199:2411039..2411208Blg00175.0-exon-Sc0000026-1570713199:2411039..2411208Branchiostoma lanceolatumexon
Blg00175.0-exon-Sc0000026-1570713199:2411799..2411935Blg00175.0-exon-Sc0000026-1570713199:2411799..2411935Branchiostoma lanceolatumexon
Blg00175.0-exon-Sc0000026-1570713199:2413298..2413420Blg00175.0-exon-Sc0000026-1570713199:2413298..2413420Branchiostoma lanceolatumexon
Blg00175.0-exon-Sc0000026-1570713199:2413616..2413713Blg00175.0-exon-Sc0000026-1570713199:2413616..2413713Branchiostoma lanceolatumexon
Blg00175.0-exon-Sc0000026-1570713199:2414033..2414165Blg00175.0-exon-Sc0000026-1570713199:2414033..2414165Branchiostoma lanceolatumexon
Blg00175.0-exon-Sc0000026-1570713199:2414749..2414913Blg00175.0-exon-Sc0000026-1570713199:2414749..2414913Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:2408477..2414913 +
Properties
Property NameValue
GeneIDBlg00175