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Blg00169.4 (mRNA) - B. lanceolatum

Overview
NameBlg00169.4
Unique NameBlg00169.4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:658417..666587-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00169.4 ID=Blg00169.4|Name=Blg00169.4|organism=Branchiostoma lanceolatum|type=mRNA|length=8171bp|location=Sequence derived from alignment at Sc0000026:658417..666587- (Branchiostoma lanceolatum)
GTTTTTAACCTCACTGCACACTGCAAAGCTAGGGTCGTCCATTTTGTCTC ACAGGTGAGAATATGTTTACTGTTCAGATTCTACATTTTATACAGGTTTT ATACAGGAATGAATGAAAGAAGGCTACATGGAAAATTGCGAGGGCCTGCA TGCCATTTCGTAAGGCGTAATTCAGCCTTTTTCGTCTTCGTAATCCGTAG GCAGTCGCCCCGAATCAAAACACAATGTGGGGTTCGCGATGAGCAAAGGA GCCTTCTAAGAAAGAAGACTTTGGGTAGAATAATGGCTAAGCATGCATTA TCAGGAGGCGACTGATTTTATGCCTATATATTCAAGTTAAATAGTACTGA CAGGCCTTCTAGCGTAGACTCTACCACCCTCTGCGGGTCGCTGGGAAAAT AGTAGAAAATGGCCAAATAGAGTCAACTGTATGAATGGGGTCGGCTATGG AGATAGGGTCCAATATTGCGAATGCTACCCTCCATGGCCAAAGTCCCCCG GCAAATGTTCTCCCTATATATATAGCCGGCGCGGTTAGTCTGGTAGAGAC TACTTCTGGCGGGTGACCTAGTTTTACCGGGAGCGCTCCTCATGGGGCGT GCCTGGAGGGGAGACTAAACAGTTACAATGAATGGCAGTAATGCATGTAG CCCTATGGGTAAGTTAAGAGAAAGAAGGTGTCATTATCTCAGGAATCAAA ACATCAGCAAACACTTACCCTCAAATACTAACCAGTTATGTCAACTGCCA TTAGATTCATTCCTGACAAATTCCATACGGCTATTCTCCAGATATACCCC CCCCCCCCTAAACAGAGCCCTTGGATAGGTCCAACAGGCTTCAGACACCC AGTTGAAGACCATGCCACTATATCAGGGGGGTGCCAAAACCCACAAGGTA GAGACAGACCATTTATTTGAACTAATTCAGCAAATACAGAGTCTGTCCTA CCACAGCCACTGCTATACTGCCCAGATTTCACAAAAATCCCACCAAAAAA GGATTTTCAATGGTTTAAACCCTGTTTTTTCTTGGTCTCTCATCGTGGGG TCTGGGCGCAGGCGCAATCCCTTTAGTCTCCCCTGGAGGACCCAGACACA TGTGAAACTTTACTTGGCCTGGTGTAGAAATCAGGGCTTTGTTTTGGGGC CTAGGTTTGATAAAAGCCGATTGATATGTCGGTTATGAAAATAAGGACAT AATTTGCTTGATATCGATTGATGAAAGAATGCCATGATTCTAACGTTGTA AATAACGGTAATTTGATACTTGCATTCGGAAGTTAGATGATTGTGAACAT CATCATGTAAGTATTCAATCCATAACACACCTTTCAAACACATCTTTCAT ACAAGTTAACACCATTCGGCGAAGGTATGGGTTCGCCGAACTCTAGTTTC GTTACAGGAATATCTCTAGTTTCGTTGGCATGTAGCATCATGAATCTGCT TACCTTTATTTTCAACACAGTTGTAAATACCGGTGTAAGATGTTGAAGCT TCTGACGTCGAGTTCCCGGATTCTCTGTGAGAAGGGCTTGCCCGATTTGC AGAAGCTGACAGCTGTAGTACCGGCAGTTATCGCAAGACGGCAACATTCC CATACGGGCAATGGACCAGGTGCACCACCGGTGGGGAGTCCAGGTAAGGA GGTTTTTTCGTTCGAGTGTAAGGTAAAGATTTTGCAGAAGCTGACAGCTG CAGTACCGTCAGTTATCGCAAGAAGGCAGCATTCCCATACGGGCAATGGG CCAGGTGCACCACCAGTGGAGAGTCCAGGTAACGAGTTTTTTTTTTTTCG TTTGAGTATAAGGTAAAGATTTTACGTGATGACGAATGGAAGAGCACGTT TTTGTTTGAGTGTGTAGTAAGTGTGTATGAATGTATGTATGCATGTATGT ATGTGTGTGTGTGTGCATGTGTGTGTGTATGTGTGTGCGTGTATGTATGT ATGTATGTGTGTGTGTGTGTGTATGTGTTTGTGTGTGTGCGCATGAGTGT GCGTGTATGTATGTGTGTGTGTGTGCATGTGTGTGTGTGTGCATGTGTGT ACGTGTGTGTATGTGTGTGTGTGTCAGTGTGTGTGTGTATGTGTGTGTGT GTGTGTGTGTGTGCATGTGTATGTGTGTGTTTATATGACAGAATGCGACA GAAACAGAGACACAGAGATCCATTTGAGATTTTCCTTGCTGTATGTACAA CAGGTTCCCAGCCGAAGATTGACTTCACAGCTCGGCTCTTGGAAATGCGA AACGGCCAAAAGGTAACGTCTACAACGGCTTATCAAAATTCCTTAAAGGC AACAAAAGCAATATTAGGGCAAAAAATTGAAATGAAATGAAATGCTGACA ACTTTATGGTAGTGACATTTACTAATATTGTTTAGCACATTTGCGTAATA ACTTCATACTTTGAGCATTTTCAAAACCGCACAAAATCGAGCCTACTAAA ACTCCGGCCACGATTTTAAGTGAGTTCTCACATTACAACAACCTTGTAGT TTTGCATGATGGACGTTGCTATACATTGTGATAGTGTTGTTTGAACCAGT CATGTATAGAAATGACTAAATAATTTGACTTCCAAAATCCGATTTTTCGG ACCCTAATTTTGCTTGTGTTTCCTTTAAAATGAGAGTGATCCATGGACAT GTCTAAAATAGCTACACATTAAAACTTTTCGATCACATGACATAAATTCT TTGAATGGAATCTAAAGTATGGAGAATCATATTCCTCCTAACTTGAATGA GAGGCTGATGTTTTTGCGTGTGTAAAAAAACGCGAGTGTAAATCGGGCCT ATGAATATATCCTAACCGTCCCGCAGGTCCAGCCGACGTTCTCAGTGGAG GAACTCCAGCGAAGGCTGAACCTGCTGCGTACTCTCATGGTCAGCAGTAA CATAGACGCCGCCCTCTTCACGTCATACCACAACATTAACTACTACGGCG ACTTTCTGCACACTGCTTTCGGCAGGCCTTACGGGCTGGTCGTCACCATG GACAAAGTGCTCTCCATATCCGCAGGTACGTCACATCCGGTTTTAGGTGT GTGCACTCACGTGACCGTGACGTAAGCATTGTCCGCCATACTGGATGGAT AAGTTAAAAGTTAAAATCCTCCCACACCATAAGGTGAATAGGGCGGTGCC CATCCCCGTTTCATAGCCCTGGGCCACACTGTGGTGCAATCACTGTAGCA GGGGCTAGTCCACTGGCAGTGGAGTGTGTTTAACTTCCATACTGTTTCAT AAGTATGTACCAATTTTATGAAAGTCTTTGGTATGACTCGATGCGCCTCT TGTCCAGAGGTGTCCTACCCGGGAATTGAACTCGGGCCTTCTGGTTTCAA GTAATCAGAGCCAGATGTGGTAAGTAACAGAAGCGCAGACCACTACACCA CAGGGACGTAAATTTCGATTTCTGGGTGAGAATTTAGATTTGTATACCGC ATGTCATTAAAGTCTATCTACGCAGGTATAGATCACTAATCTTCAGTGTT TTAATAATGATATACAGCATACCTACGCAACATTTGGGACTATAACATAG AGTCTAATGGGTAGAACAGGACTAGGCAGTTAGTTGCAAGTACAAAATGT AGCAGTGATTATCTGCTTATTGATAGATAAAGTAATCACCTCCCACCACC CAACTGTTCCCTAAAAACGTTAAAACAGAAAACAAAAAAAATTAGCGTGG CAATTAAAAATTATTGCCATAGCGAAGGTGTCTGGGTTGATCTTACTCCA CTGTAAAGAAAGTACCAACGTAGCACTCTTTAGTTCTGCCATGATAATAT TAAACAAGTTCTTGTGATAATAAATCAACTGGGGTGGGTTTTAAACCCTT TTCGAAACAAGAACACTAGCTAGATTCCGTGTAACCCCCTGACACGCTCC CAATAGTACGAAATCGGACACCACGTAGGTAGGTCATCTGTCATCGACCT GCGTGCTGGAATACCAGACCTTACTAACAAGGTATAGAGTGACAGGCGGC GTCCGCGGACGGATTCCTGTAAGATTCCGGGAATTCTGGTGAAACGGGCC TAAAACATACTATTAAGCTCGCTCCTGAAGCTTCGCTAAAAACTACGAAA AATGTATTTCGTTCACATCCGGTGGGCTCGAAACATTTTCAGTTTTCACA TTGAAAGCCGGCTTGTTTTTCCGTTTGAAACCTTGCAGCCGTTGACGGCG GCCAACCCTGGAGACGGACACAGATTGGCGAGAACGTCATATACACCGAC TGGGTGCCCGACAACTTCTACCACGCGGTCCAAAGAGAGCTAGCGGACCG AGGCCTAATGACGCTTGGTGTGGAGTTCGACCACGTGACGCTAGATGGCT TCACCAAGCTGAACCAGGCCGTACCCGACATGCAGAAAATAGACATAGGG AAGCCCGCTATGCGCCTGCGCATGAAGAAATCGGACGAAGAGATCGCGCT TATCAGGTGTGTATGTCCAATTTTTTTCTATGCATCGTCATGATTCGGAC AGTTGTGCCACCGGAAAGCTAACATATCTACAACTTTATTGTATCTACAA AAGCACAATAAGATCAAAATAATGTATCCTATTAGTATGAGATATATTCT TTAATTTTGGAGACAAGCTTCTCAAAAGGTAAATCCCAAAGCTTCTTGAA ACAAATAAGAGCTTTTCTTTATTGTTTCTGTTCCTTTATTGTTTCTGTTG GTTTCTTTCCTACTCTTCTCCATATCCCTGTATCTGTGGTCCATTCCGCT GCGGGATTGGAACAGAGAGGGCGCGCGTATAGCTGACCTGGGCGGGTGGG CTGTGGTGGAGGCGCTAGAGGAGGGCGTGCCTGAGTACAAGCTGGCGATC CATGCTAAAAACACCATGATCAATGAAGTGGCCAGGACCTACCCGCATGG CGAACTCATGAACAGTCAGTATAAAATTACTTCCTTATATGGTGTTGGCT GCATATGACGTCACGGCCGCCATATTGACTGGTTGAACCTATCGGTGTCA GACCTATAGATTATGAATGTGTATAATGTGTAATAGTTATTTCTCTTTGC CGAGGTATCATGCAAAGTTCTTGAGCATGTCATTAATGTTTATTTTTTCT CTCTCTTTCCAGCTTGGGCTTGGATCAATTCAGGGATCAACACTGACGGG GCACACAACCCTCTGACGTCACGGCGCGTGCGCAGTGGGGACATCCTGTC ACTCAACGTCTTCCCCATGATTGCTGGGTATGACTCTAAACTTAATTGGT TCACGTTTGTTTCGAAGTGACAACGTTAATATTTCAGTTGATGTTGATTG GTCTAAACATTTTGCATGGCATTTGGGTCGACACGAAGTCTGGCCATAAA GAAAACGGGGCAAAATAGAAAGCCCGACAAAACCGACTAAAAACACGCCA AAACCCAGCCGGACACATTCCTATGTTTGGGGAGTAAGGTTCAGGACACA TGCTGGATGGGTAAAACTGAGTTTCGAATTGAATTTGCAAATGTTCTTAA AGGCATCCAGGGCATTTCATCAGGCTGGAAACTTGAAGAAAAAAATTACA CATAGTAAGTTTCAATAACACTATACCATTACATATCGACATTAAAGGAG CAAAGGTACGATGTCGGTGTGTGGTGAGAACTGAAAATAGAAAATCCAAG CGCTAACAACAGACTGATCCTGACTGTCCCTCACAATTAGCGGTTGGACC AATGAGAGTGTGACTGCATGTCGGTCAAATATTTGCATTTTCATGTTTTA ATTTTGCATTTCTACCTTTTGACGGAGGTGGGCGGGGCTATGGTATCGGT ATATTTACATTAGGCGCGTGAAACTAAAAGATCACCATGTAGCTTATTGT TGTGCCGCTTTTGAGCACTTTTGACAAGAAATTCACACGCAAATGTGGTA AACATGTGGCATTAAATGTCAATTTCATGAAGATTACAGCAACTAGAATA TTTCCAGTTTTCAAGCCTCATAAAATGCTCTGGGTGCCTTTAAAGTAACA TAATGATTACATGATACACATGGGAAATTTATTATGGGTTCATTTTTGCA TCATTTTATCTCCTCAACACTAGTGCACTGTTGACATGATGTAATTCCTG TTGACATCTCTGTCCCTACATTTCAGGTACTACACTGCCCTGGAGAGGAC GGCATTCCTGAACCACGCCTCCGACGCCCACCTCGCTCTGTGGGAGAAAA ACTGTCAAGTAAGCCTAGTTGCCATCTGGTCATGTCATATTCGTCATAGG ACAGCTGGGTTTACAACACTGAAATTAATCGAATTGAAATTAAAGACTCT TTGCACACAACGAAGTGTTATATTCCATCAGCGTTTCGGTGACCATCTGT CACCTTCCTCATGGCAATTCGGACTTGTTCACATTGTACTGCAGCATAGG TGTCGCTGCTTATAGATGCGGCCCCAAAAGTAAAGTATGCGATGTAAACC AGTCAGAATATTCGTCCCGAGGAAGATGACAAACGGTCACCGAAACATTG GTTTAATGAAACACTTGGCTTTGTACAAATAGATTTTCTATTCAGTATAC ATATATACTTACCAAGCAACCTGATGAAATTCTATCATTAGACAATTTTT GGGTACGCTGATATGATTTTTTCGACTTCAGTTCGTCGTCATCTTGTCCT TGTGCGTTCCATTGTGTGTGTTTCATCAATAGAAAATTGGGGAAAATCAT TGACTTAGACTTAATTTGGACCAGTCGTGGCATGATGTTTCGTAAACACG TGTTCGACAACTATCTTGTGAATCGAAAAAGGCTGACGGCCATAGAGCTC TGTCAACGGTCGGTCCTTTCAGTGACTTTCCTTAGTTCTGCCAAAGAATA CAGGCACATTGTTCATTCCGTGATGGGTACTGTGCTTACATAGGTAAACG TATGTGTTCTTGGTGTTAAACAACATAAACGCACACAAAATACCTGTCCT TGGTGCTGAACACCACCCACAAAAAAGCATACCTGTTAAGTCTCACTTCT CTACCGTTGTTCCCACCACGGTGACTACCAGGTACATCGGCGGGGTCTGG AGCTCATCCGACCGGGAGCACGCTGCTGTGACATCGCTAAAGAGCTGAAC GAGATGTACCGGGAACAGGGGCTGCTGGAGTACCACCCTATCGGCTACGG ACACTCCTTCGGCGTCATGTGCACTTACTACGGCAGGGAAGCGGGTCGGT GATAATGATTGTTGCCTGAAAATGGAGGTGTTGTTTTTAGTGTGTGTGTT TGTTTGTGTGTGTGTGTTTGTGTGTGTGTATTTGTGTGTGTTTGTTTGCT TGTGTGTGTGTGTATATGTGTGTGTATTTGTGTGTGTATGTGTATGTGTG TGTGACTGTGTGTGTGTGTGTGTGTGTGNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGT GTGTGTGTGTGTGTGTGTGTGTGTGTGCTTGTGTGTGTTTCCAATTATTT GGTGTTTGGGTAGGTATTCTGAATTCAAAGGGTTTTTTGCATGAGCGAAA CGACCTATGTTTATCAAGTGGGTTGGTGCGAAGTCACTAACAATGGAGTT AATGGGAACCGGTTTGGGATTTTGGGATAACATTTGGGTTAGCGTTCACT CTGAATGAAGCGCGACACTTGACTAGAGTGGGGTCGTGTGGTGTAACGGC AGGCTTTTCAACTCAGAACCCAGGGGTCCCGGGTTCGAATCCACCGATCT TGTGCCCTTGGGAAAAGGGCACTTTACACGACCTTCCCCACTCGACCCAA GTGTAAATAGCTGCTTGTGCCCCACGTGTATTGCACTGTTGCAATTCCAA TAAAATCGAAGAAAATTCAAAGATCTAGAAATCCTTCTGAGTCTTCTTTT TTCTGTTCTCGTTCCCAGATTTGGAGCTCCGTGAGGACATCCCGACCGTT CTCGAGCCCGGGATGGTCATGTCCATGGAGCCGATGATCACGATTCCCGA GGGCATGCCGGGAGCGGGCGGGTACCGTGAGCACGACATCCTGGTGGTGA CGGAAGACGGGGCGGAGAACATCACAGGCTTCCCCCTGGGTCCCGAACAC AACATCATCAAAAAGAAATAG

Coding sequence (CDS) from alignment at Sc0000026:658417..666587-

>Blg00169.4 ID=Blg00169.4|Name=Blg00169.4|organism=Branchiostoma lanceolatum|type=CDS|length=1392bp|location=Sequence derived from alignment at Sc0000026:658417..666587- (Branchiostoma lanceolatum)
ATGTTGAAGCTTCTGACGTCGAGTTCCCGGATTCTCTGTGAGAAGGGCTT
GCCCGATTTGCAGAAGCTGACAGCTGTAGTACCGGCAGTTATCGCAAGAC
GGCAACATTCCCATACGGGCAATGGACCAGGTGCACCACCGGTGGGGAGT
CCAGGTTCCCAGCCGAAGATTGACTTCACAGCTCGGCTCTTGGAAATGCG
AAACGGCCAAAAGGTCCAGCCGACGTTCTCAGTGGAGGAACTCCAGCGAA
GGCTGAACCTGCTGCGTACTCTCATGGTCAGCAGTAACATAGACGCCGCC
CTCTTCACGTCATACCACAACATTAACTACTACGGCGACTTTCTGCACAC
TGCTTTCGGCAGGCCTTACGGGCTGGTCGTCACCATGGACAAAGTGCTCT
CCATATCCGCAGCCGTTGACGGCGGCCAACCCTGGAGACGGACACAGATT
GGCGAGAACGTCATATACACCGACTGGGTGCCCGACAACTTCTACCACGC
GGTCCAAAGAGAGCTAGCGGACCGAGGCCTAATGACGCTTGGTGTGGAGT
TCGACCACGTGACGCTAGATGGCTTCACCAAGCTGAACCAGGCCGTACCC
GACATGCAGAAAATAGACATAGGGAAGCCCGCTATGCGCCTGCGCATGAA
GAAATCGGACGAAGAGATCGCGCTTATCAGAGAGGGCGCGCGTATAGCTG
ACCTGGGCGGGTGGGCTGTGGTGGAGGCGCTAGAGGAGGGCGTGCCTGAG
TACAAGCTGGCGATCCATGCTAAAAACACCATGATCAATGAAGTGGCCAG
GACCTACCCGCATGGCGAACTCATGAACACTTGGGCTTGGATCAATTCAG
GGATCAACACTGACGGGGCACACAACCCTCTGACGTCACGGCGCGTGCGC
AGTGGGGACATCCTGTCACTCAACGTCTTCCCCATGATTGCTGGGTACTA
CACTGCCCTGGAGAGGACGGCATTCCTGAACCACGCCTCCGACGCCCACC
TCGCTCTGTGGGAGAAAAACTGTCAAGTACATCGGCGGGGTCTGGAGCTC
ATCCGACCGGGAGCACGCTGCTGTGACATCGCTAAAGAGCTGAACGAGAT
GTACCGGGAACAGGGGCTGCTGGAGTACCACCCTATCGGCTACGGACACT
CCTTCGGCGTCATGTGCACTTACTACGGCAGGGAAGCGGATTTGGAGCTC
CGTGAGGACATCCCGACCGTTCTCGAGCCCGGGATGGTCATGTCCATGGA
GCCGATGATCACGATTCCCGAGGGCATGCCGGGAGCGGGCGGGTACCGTG
AGCACGACATCCTGGTGGTGACGGAAGACGGGGCGGAGAACATCACAGGC
TTCCCCCTGGGTCCCGAACACAACATCATCAAAAAGAAATAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00169.4-exon-Sc0000026-1570713199:666534..666587Blg00169.4-exon-Sc0000026-1570713199:666534..666587Branchiostoma lanceolatumexon
Blg00169.4-exon-Sc0000026-1570713199:664945..665117Blg00169.4-exon-Sc0000026-1570713199:664945..665117Branchiostoma lanceolatumexon
Blg00169.4-exon-Sc0000026-1570713199:664326..664384Blg00169.4-exon-Sc0000026-1570713199:664326..664384Branchiostoma lanceolatumexon
Blg00169.4-exon-Sc0000026-1570713199:663563..663761Blg00169.4-exon-Sc0000026-1570713199:663563..663761Branchiostoma lanceolatumexon
Blg00169.4-exon-Sc0000026-1570713199:662132..662399Blg00169.4-exon-Sc0000026-1570713199:662132..662399Branchiostoma lanceolatumexon
Blg00169.4-exon-Sc0000026-1570713199:661674..661822Blg00169.4-exon-Sc0000026-1570713199:661674..661822Branchiostoma lanceolatumexon
Blg00169.4-exon-Sc0000026-1570713199:661361..661475Blg00169.4-exon-Sc0000026-1570713199:661361..661475Branchiostoma lanceolatumexon
Blg00169.4-exon-Sc0000026-1570713199:660380..660461Blg00169.4-exon-Sc0000026-1570713199:660380..660461Branchiostoma lanceolatumexon
Blg00169.4-exon-Sc0000026-1570713199:659394..659556Blg00169.4-exon-Sc0000026-1570713199:659394..659556Branchiostoma lanceolatumexon
Blg00169.4-exon-Sc0000026-1570713199:658417..658619Blg00169.4-exon-Sc0000026-1570713199:658417..658619Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00169.4Blg00169.4-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:658417..666587 -
Properties
Property NameValue
GeneIDBlg00169