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Blg00166.0 (mRNA) - B. lanceolatum

Overview
NameBlg00166.0
Unique NameBlg00166.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:2415212..2420911+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00166.0 ID=Blg00166.0|Name=Blg00166.0|organism=Branchiostoma lanceolatum|type=mRNA|length=5700bp|location=Sequence derived from alignment at Sc0000026:2415212..2420911+ (Branchiostoma lanceolatum)
ATGACCATTATCGAACGGACATTTGCAAAAAAACTACAGGTGTTTCTGCC GAACGATCCGCCTTACACGTGGTTGATGGCAAAGATGTGGTTCAACTGTG CCGACGGGAACTACCACGAGGCTGTGCCCCATCTCGGTGAGATGAATTTC ACACATTTTCCATTCCGTTCCAATTCGTTCCGTTTCGTACTTTAGGGACA CCCGTTTTGACGTGACGTCACACTCGCCTTTCTGGTTGGTTGGACCCGAA AGATTGCTTTCCATGAATAGAACTATGCATAGATTGATGCATGCATTTTA GATGTCATAGCTACATGATTGCAATCATATCTACGAATTCAAATCTACCT CTACAACTATGTTTAACTGATCAGGATGGCGGACAGTATATCAGTGAAGT CATAGTGACGTTTGTGCGAAAACCTGTAGGATTCTGGGTACAATGAATGA ATAAACGACTTGAGCGATTAAAGGTTTATTATTGCGCTTATGACCAAAAT CAAAATGATACAAACATCATATGAATGATATGTATAAAATGAAACTGACG TAAAAAGATAATCTTTTAGTTCTTTCTTTCTTAAATTTACTATTTACGTT TTATACTTTACTATTGTATACTAGAATATGATGCATTTTGTCATGTGTAC ATGTGTTTATTCATAAATATACCTTTTTTCTCTTCACAGGATTCACCCAT TTATTGGTTGAGGCACTCGCACTTTCAGCCAATCAGAACCTCGCGCCGGC CCACCCGATTCTCCGTCTGATGCAGCCGCACTTCATCTACCTTTTCGCCA TCAATCAGTGAGATACTGAAATATGAATATATTGATGTTCGCGGTGGTTT TATTTGATATGCTGTTTTCATAAATCAAAACACCGCGAATATGCGTCTCC ATTGTATTATTATCATCATTACCGCCATATCAAATCCCCGCGAAGATTAC CTTATTCACAGTATATGGCAGAATAAGTCAATTAGATAAAGCACACAAAT CATGTTTAGATAAACAGAAGCCAGCTTTAACATCGACAATGTGTGATATT TGTTTGCATTTATCTTAGCTTTTGGGTGGATATGAATGCAAAAAGATTCA TATATTTATTAAGGTATGCGTACTTAATATACAAGATGCAATATGTTTAG GCTGCATAAAAGACATTGGTATGTCAATGACGAATTTATACATTGGAGCG TGTTTTGATTAAAGATTCCATTTACGGCAATCAAAGATACACGTTATTAG GTTTTGGCGACGCTTCGGGAGCGAGCCTAATGGAATGCATGATATTGTTT GTTGTTGTGTAGGCTGGCGTTGGAGACACTGATCAGCAAAGATGGTGGTC TGGATAAAGTCACCCAGATTGGCAGGGACGGCGGCTTCGCTCTTATCAAA GAAAGGTAAGGTCATGGATCAAGGTAGGAATAGGCTAATGAATTCAAGTC CTACCCACACCATGCATGGTGCATAGGGCGGACCTAACTCTGTTTATATA GTCACACAACATTGTACAATTGTTACAGCAGGGGCCTAATTCACTGGTAG TGGTGTGTGTGGGTTCAACTTCTATGCTCTTTTCCAAACGCTGAGTCGTA TGCAAAATAAGCCATAAGTGCCATCTTATAAGTCTTTCGTATGATCAGTT CTTGGGATATCAGTCTTACTGGGTAGCTGCTTTGATAAATGGTTTTTCAT TTGATATATTTAGCGTCAAATGTCAAAATAATGTTTCTTCTTCTTTCATA TATGATTTCTACAGGCTGAAGACCTGGCGACTTGATGTGGATGGTACACT TCCGGAAGACTTGAAAAATCGAGGGGTGAGAGCAGGTTTTTGAGAACTAA AACTATTCGCAAGTGAAAGCTTCATTTAACTCGTATTATTTATTCCACCT TCATTTTATTCAATGTGTTTGTATCAACATACTAAGTAAGTCAACACACG TTGATACCATACTTATTTAATGCTATAATGTATTGGCTAACTTTAGATCA GATTACCTTTATACAATATATTTTATCATCTACATAGTATCATAATTTAA TTTTCTTATCCTGTATTTGTATATTGTTTCCTATGTTAACTTAGATGAAT ATTGTTATTACTGTTGGCGTAATAAGGACGTTCAGGATTCCAGGTACGCA TGGGCAAGGTCAAAGGTGAAACCCCCTTACTTGTAAACAGTTCTTGTCTC GACCATGCGTCATCGGTCGATTTGCATAATAATACGGGGCGTGTTTTGTT GATATCTCAAGGGACCTCACCTTTGGCCTTGCGCATGTGTATTTTGAATC CTGAATAGGGACTTTCTTTTTAATGTAAGGCTGATATTTTCTCAATGAAT CATTAATCACCATTATTATCATCATTGATGCTACGTAATAAGCAAAGCCA TTGAAACGCGAATACAAACCTATTCAGGTGGACGATGAGAAAAATTTGCC TAAGTACTACTACCGCGACGATGCTCTGCGCTCGTACTACGTAGTGCACA AATACGTCACCAGCGTCGTCAAGATTTTCTACGATGATGGCAGTAAGTAT GCAAATATGACTGACGTGTCACCGGTAATTTCCTGGTCATCTATAACATT ATTACCTTTGTGAAGGAGGGCGTTGTTTTAGGTGTATCTATATGTCTGTG CTCCCGCATTTCCACATAATAATTTTGTCCGACAAACTCAAGAAGCTATG AATGTATTGTGATGATATTTCGAATATGGGTAGGTCTTTGGAAGACAAGG TTGAAGGTCAATTTTGGGCCTTCTAGCGGCTTTTCTTGCTTTACACGTAT CAACGACTCAATGCAAGGAGACGGGTTGAAGTCTTGCTTCTAGCTGGCTT GCAAACATCATCTATATCTACAACGTCATGAATTTGCACGAGAGACGTAC GAGATATTTCAATTTTGGATAATTTCCGTTTTTTTCTCAGACGATTCTGC CAAGCTGAGGGAAGACAAAGAGATCCAGGCTTGGGCAAAGGCTCTTGCTT CTTCATCCGATGGAAGTATTGTCGTGAAGGTAATTTAAAATGCATTAAAC TTCACAAGCTCAATCTTCTGTCAAGAAAGTAATTGACGGATGTTATGATT ATTTCATCCATATGCCGTTATGATTAATTACATTATATAAATGGAAAGGT TAAACTGTTCTGCAACTAAAAAAATCGGACTCCTCAAAAATTGGAATTTT CGACTAAATCACACAGTCGTCTCAGCTATTTGACTCAATCACTGTGGACA CGTGACTTGCCGTACGTGTGACGTCAGCAATGGGTCAACGTTTGTTGAAA GTCGATATCTTTCCCCGTCCCGTGTGAAAGAAGGCTAGAGTAGCCTGGTG TAAATGACCTTCTTTTACTCCTGTCACAAACTGCTCCTGTTCGGTATCCA TAATGTTGACACACTCCAACGAAACTGTATGACCCGGAGTGTAATATATG ATATTATGAATCATTATCATCATGGGGGGTGTGAGGTCCCGGGCTAAGGC GGGCAGGCCTCTAGCCTGGCACGGAACGACTCAACGGTGGGAGCCGTCGA CGTCACAACCGTGACAGGCAGGGTATTCCACTGAGGAACGGTACGGGGGA AGCATAAGTGTTTGTATGTGTCGGTTCTGGCGTTGATCGTTTGAAATTTG AGCTGATGGCTCTCCCAGGTGTGCCCCTGGGATAGTTTTAGTAATCTGTC AGTGTTAATACTAATATGAATGTTAACTAAGTTTGTAGAAAAAAGGGAGG CGGGCGTCCCTCCTTCCTTTGAATATGCTGTGCAATCTCTAATGAAGAAG AACTGTATCATTTGTCCTATGATCTTTTGACCCATTGTTATGGAAATTTT GTGAGTCCCAGTTCTTATGTCAGAGTAAAGTTTCTTTTCAAAAATTATAT TCAAATCACACACAGGGAGTTCCTGGCGATGGACAGTTCTCCACCCTTGA TGAGCTGATCCAGACCGTCACCTCCGTCATCTTCACCAGTAGCGTGCAGC ACGCAGCTGTCAACTTCATGCAGTGGGACCAGTACGCCTTCGTACCCAAC ATGCCGCTCATGTTAGAGGGGATCCCACCCAGAAACAAGGTCATTCACTT GTTACACAGTCTGTTACTGATTATCCGTTCTCCTGTTAGCCCACCCTCCT TTAGCAGCGCTGAAAACCGCTCGGGAAATGCTCGGCAAACCCTCCCGGTC TCAGCCCTGCTCTTTTGAACGGAGATTTTGGGTTCTGGGGTATCACCAGC GAACAGCTTTCAGCCAGTCACAGGAGTGGCACAAGCTCATCTTGTGCAAA AACCGCATAGGTCGCTGGGAAGCTATCAGCCAATCAAGTTACGTCTTACA TCACTATTTTGGGTTCAGAACAAGATAACGGCTGTTTGTTCCATATAAGG CCAGATCATTGATTATTCATGAGCAACTGTCAGTGACGCCTCCAGAACCC AAAATCTCCGTTCAAAAGAGCAGGGCTGAGAGCGGGAGGGTTTGCCGAGC GTTTCCCGTGCGGGTTTCAGTGCTAAAGGACGGTGCTGTTAGCCAGGAGA CTGATTTAGAACATGAAAAGTGCCAATAGGATTCTCTGTCACTATGAAAA CCTATCGACTTGGAGTCGACTTAAAAAACGCATGTGTAAACCCAGTCATT CTCTCTGTTCATTTGCACCATAATGGTACAAAATTATTTGGTGGAGGTAT AAGGTAGTGGAATTCTAGTTTGTTTTGTGTGTTGTCGGTCGTATTATGAG GAGCCACAACTCATTCTTATGCGAACACGCATTGAAACAGTGCATCTTAA TCTACATGAGTAAATTTTTTGAATGCGTCTTTTCACAGAATGTTCTAACA GAACAGGACGTCCTTGATGCCCTTCCTGATAAGAGGAAAACTGTTGAGAT CAACCTTTTGGCCGACGTCCTCAGTGATCGGGCAACACAGCCTCTGGGAG ACTTCTTAGTTTCATACCTACAAGGTCCCAAAGAGCTGCAAGCCGTTGAA AGGTACCCAATGTCTCTCCTGGTTTAGGTAAAATAGAGATATAGTTTTGT CCATTTGTACGTAATGCTGTGTGTGTGTGTCTGAGTGTGTGTGTCTGAGT GTGTGTCTATGTATATGTGTGTGAGTCTGTGCGTGTGTGAATGTGTGTGT GTGCGTATGTGAATGTGTGCGTCTATGTATATGTGTGTGTGTGTGGCTGA GTGTGTCTGTGTGTGTGGGAGGGGTGGGGGTATGTGACCCAAGTCATTGT CGACAAAACAAAATGTAAAGCAAGCAAATCAAATAATACAAATGAAAGAT TAGAAACCATGAAATGGCAAGTCACTGTAATTGATAACTGTCGCTGACAG AAAAGCTGATCCTGTTATCATCTGACGGTTTTCCAATATTTCATCGAGTT AACTAACATCATATTCAGTTACCTAACTGCGTAAACTACTGGCTTGATAA AAAAAAACTTTAAGTTTAATTTGACGTACTTTATAATCATCATATCTTAA TCTCAAAACTATTGAATAGACCTTTAACAAAATAGATTTAATTAATAATA ATGTGTTTTTAATGTTTTACAGGTTCAAGGAGGATCTAGCTGCTGTCGGA AGCAAAATTGAATATGAGAACCAAACGCAGCGTTTCCAACCTTACGACTA CTTGGATCCAAAGCTCATCCCAAATGCTATCAGCATCTAGAAAATATGGC

Coding sequence (CDS) from alignment at Sc0000026:2415212..2420911+

>Blg00166.0 ID=Blg00166.0|Name=Blg00166.0|organism=Branchiostoma lanceolatum|type=CDS|length=1068bp|location=Sequence derived from alignment at Sc0000026:2415212..2420911+ (Branchiostoma lanceolatum)
ATGACCATTATCGAACGGACATTTGCAAAAAAACTACAGGTGTTTCTGCC
GAACGATCCGCCTTACACGTGGTTGATGGCAAAGATGTGGTTCAACTGTG
CCGACGGGAACTACCACGAGGCTGTGCCCCATCTCGGATTCACCCATTTA
TTGGTTGAGGCACTCGCACTTTCAGCCAATCAGAACCTCGCGCCGGCCCA
CCCGATTCTCCGTCTGATGCAGCCGCACTTCATCTACCTTTTCGCCATCA
ATCAGCTGGCGTTGGAGACACTGATCAGCAAAGATGGTGGTCTGGATAAA
GTCACCCAGATTGGCAGGGACGGCGGCTTCGCTCTTATCAAAGAAAGGCT
GAAGACCTGGCGACTTGATGTGGATGGTACACTTCCGGAAGACTTGAAAA
ATCGAGGGGTGGACGATGAGAAAAATTTGCCTAAGTACTACTACCGCGAC
GATGCTCTGCGCTCGTACTACGTAGTGCACAAATACGTCACCAGCGTCGT
CAAGATTTTCTACGATGATGGCAACGATTCTGCCAAGCTGAGGGAAGACA
AAGAGATCCAGGCTTGGGCAAAGGCTCTTGCTTCTTCATCCGATGGAAGT
ATTGTCGTGAAGGGAGTTCCTGGCGATGGACAGTTCTCCACCCTTGATGA
GCTGATCCAGACCGTCACCTCCGTCATCTTCACCAGTAGCGTGCAGCACG
CAGCTGTCAACTTCATGCAGTGGGACCAGTACGCCTTCGTACCCAACATG
CCGCTCATGTTAGAGGGGATCCCACCCAGAAACAAGAATGTTCTAACAGA
ACAGGACGTCCTTGATGCCCTTCCTGATAAGAGGAAAACTGTTGAGATCA
ACCTTTTGGCCGACGTCCTCAGTGATCGGGCAACACAGCCTCTGGGAGAC
TTCTTAGTTTCATACCTACAAGGTCCCAAAGAGCTGCAAGCCGTTGAAAG
GTTCAAGGAGGATCTAGCTGCTGTCGGAAGCAAAATTGAATATGAGAACC
AAACGCAGCGTTTCCAACCTTACGACTACTTGGATCCAAAGCTCATCCCA
AATGCTATCAGCATCTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00166.0-exon-Sc0000026-1570713199:2415212..2415347Blg00166.0-exon-Sc0000026-1570713199:2415212..2415347Branchiostoma lanceolatumexon
Blg00166.0-exon-Sc0000026-1570713199:2415901..2416018Blg00166.0-exon-Sc0000026-1570713199:2415901..2416018Branchiostoma lanceolatumexon
Blg00166.0-exon-Sc0000026-1570713199:2416524..2416616Blg00166.0-exon-Sc0000026-1570713199:2416524..2416616Branchiostoma lanceolatumexon
Blg00166.0-exon-Sc0000026-1570713199:2416976..2417036Blg00166.0-exon-Sc0000026-1570713199:2416976..2417036Branchiostoma lanceolatumexon
Blg00166.0-exon-Sc0000026-1570713199:2417639..2417753Blg00166.0-exon-Sc0000026-1570713199:2417639..2417753Branchiostoma lanceolatumexon
Blg00166.0-exon-Sc0000026-1570713199:2418152..2418240Blg00166.0-exon-Sc0000026-1570713199:2418152..2418240Branchiostoma lanceolatumexon
Blg00166.0-exon-Sc0000026-1570713199:2419127..2419300Blg00166.0-exon-Sc0000026-1570713199:2419127..2419300Branchiostoma lanceolatumexon
Blg00166.0-exon-Sc0000026-1570713199:2420050..2420213Blg00166.0-exon-Sc0000026-1570713199:2420050..2420213Branchiostoma lanceolatumexon
Blg00166.0-exon-Sc0000026-1570713199:2420784..2420911Blg00166.0-exon-Sc0000026-1570713199:2420784..2420911Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00166.0Blg00166.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:2415212..2420911 +
Properties
Property NameValue
GeneIDBlg00166