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Blg00160.4 (mRNA) - B. lanceolatum

Overview
NameBlg00160.4
Unique NameBlg00160.4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:1280573..1288582+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00160.4 ID=Blg00160.4|Name=Blg00160.4|organism=Branchiostoma lanceolatum|type=mRNA|length=8010bp|location=Sequence derived from alignment at Sc0000026:1280573..1288582+ (Branchiostoma lanceolatum)
TGCGCCCGCACACAAAATGGCGGACATAACTTGCCAGTCTGGTGAAGTCT GTTTTCTTCTTCGAATTTAGCACCCCAAAAACCTCTGTCTGCCTCTAAAT CTTAGACAAGTGGCTGTCCTAGCGTCTCAGGATGGGAAACAGCAGCAGTA CGTCTCCAGAAAGAGGTAAATGTTGGTTATTCTGAGGAGAAAACTTGTGT CAGGAAACCGCCATGTTCATTCCTGTCCTATGTTTTCACATCCGCATGAC GTAACTGTCTAGTGATTTTTTCTTTCCATGACTTTTGTCCATTTATGTCA GAACAAAAACCTACATAATTCTGTTATTCTGTCAGACCGTGTGTTGTAGG CTTTAGGTACATAATACGTCTGTTATATCTTTCAGTGAATAGAAAAACAC ATGGAAATTTTACTCAGGCTAAGATTTCACAAAAGATTATTTCACTGTTT GGATGAAAACTGGTCATCATTTGTATAATTTCGTGGGTCGTCTTGTCATC TGTATGTGTTTGAAAATCAAGGAAGAAGCTTGAGTTCTGCTTTGATTGTA TTTAATACTTCTAAAAGTCTAGCTGACATGACATTTTTTACTCCTATTGA ATATTGTACCTTGCACATGTGAAAGTTCAAAGGTTAAATCAGTTTCATAT TGACTAGAAATCTCATTTGAATACTGTAAATGGCTATAGCGTAGCATGGA ATTAATCTCGCAGTAGGATGGGGAAGGATTGTTTGTGGTGTTTGAAGGTC GCGTTGGAAACAATTTACAGTAGTAAATAAAACTGCGAGTATAAAACCTT TGTGAACATTTTATGATTTATGGTAGACTGCATGTAAACAAGAGATGAGC CACCCTTTTTAGTTAGGTAATTATAAATGATGCACCATAAGAAAAAATCA AAAATAAGAGAATTCATGACACATCATTCTTGAAAGTGAAAGTGATCTTG ACCCAGCTTAGCTCACTGAAGAGCTTATCTTCCTCGGGTCGTGACAGAGA AGACAAACACTATGTACACTATTTACAGGTTCATTGTATAGAGAAAAATT CCCCTAGCTCTTTTCAACAAGCACAGTGAACAATGAACAGTGGACCACAG CTTTACCTACCTACCTAAGGATTGTGACCCTTTTCAGTAGCATGCATGTT GCTTGGGTGAGCGACAACAGATGGAATTCAAACTGCATATTGGTCCTAAG GCTGGGTTGCTAACCACTGGGACCATGATGTTATGGTTAATCTCCAAACA GATGTTGAGACGTGAGATTGTAACTTTTTCAGACTGCATGCATGTGTCAG AGAAGTAGAGCAATCGGAAAACATTAAGATCTTTCAACCGGACATCTGCT TGAGAATAAGGTTGAGGCAATGTTAAGCATTTGTGTATGCACTAGCAGAT AAACAAAGAAATCAGTGAATTATCAAATGTAGATTTGATCAAATTGATGA TCCATTCATAGAATGTACAGTCATGAGCTTGCAAGTCAAAATGGAAAGCT TAGAAGCTAGAAAGAAAGTACATTCAGTTACGTTTGCAGCATAGAAACAT GGCAGCATGGTGAAAATGAAGTAGTGTGTTTAAGTTCAATAAAACAATAC ATGCAGGTCCAAACTGAGTCCAAAGGGATTTAGTACATGAGCTATATTAC TGCATGGACATACAGAAATTTACCAACAGTCAACATCCAATCCCAGGACA AAAAAAAAACAGTCACAGTACATCCATAAGTACTTAGGCCACACCAACTT GATTTTATGGATGACATCCTCTGGAGACCCCAAAAATAATGCGGGCGGGC GAAAAAAAGAAAAATCCAGCAAAAAAAAAAATGCTGCTAAACCACAGGAC TACTAGAACACAGTTTATTTGTAGGAGGCACATGTAGGTTGTCTTGTTCA TCATAGCAGACTCAGCGCAAGTGATTAATTTTTAATATATTGACAAGAAC GACCAAAGAATAGTATACTATTAGAAGGTATTTGGCTCCAAGGACTGTGG ATGATATATGACTGTGATGAGACACTCATATCATATACACCCATAAGGGC AGTTTCAACATACATGGCATTGAACTCCATATTAAGCATTCCATGGTTTA CGCTCACAAATCCCTCTGCCAATCCCTCAATTCCTCTCCCATGTCTCTCA TTGTTGCAAAAGAAACGTGTGAGAGCCACTCTGGATAGGTCGTGTTTGAA ATTGTCTTGGCGATACTCGCTGGCCTCCGCGATCCTCTTGTACAACTGTG CAAATGCAAAGTCCCCCTAGCCAACATCGATGGCATACTAATCCACAAAT ACGCCCCAGTTTTCCGATAAGCCGGTACAGTGCTAGCCTTTTGCGGCAAT CTAAGTCGGCAAGTTCCGGAGTTCCGTGTAGCCTTGGAGGAGGTGATTTT TTTTTTTTTGAGAACAGGCGAAAATCAATGCGCGCGCGGATGTCATCCAT AAGATTAAGTTGGTGTGGCCTTACCTGAAACCAAAATGAATAGAGTAGAA ATTTAAAGTTTGCAAGCAAATAGTACATGTACATAATGTTAACCATCATG ATTTGGTCTACCCTAGCAAACTACTGCTCACTGATTCGAATTCTTACTCA AACATGCTCATACGTGCATATATGGTGACCAGCCCCTGTAGATCTGTCCT GCCACTTGCTACCAAATCTAATCAACACTAATTTTAATATGAACAGGGTG TCTGCTACTTTACCTGTAACCATGGTGACAGTCATGCGGTCCAGGTCATG GAAATTGATTGTTTAGAAAGAAGTTAGAGGAAGAAATGAAAGAACAATGT TTCACTTCTGTGAAGTTAATCATAATAATCAAATCCCCTTTAATCAAATT GCCCTCTTTGGGTCAAAGGTCGCACATAAAAACCTGTTAAAATCTAGAGG AAGTACTCCAAGCGTCTGTTATTACAAGGCTTGTAAAGATAAGATTGTTC TAAATTGAAACACTTAAAGATTGTCAGTTTCAGTTTCCTGTACTGGCAAT ACAATACAAATGCTCTCTTGTAATAGATTCTCTGTATAGATTGCTAAAGA CTTTGTTAGAATTAATATGTATGAACTATGATAATGTTTTAAGTATTCAG TTTGTATCTGGATTCCAGCTTATTTGAAAGTGGAGCCTGTGACTTAGTGT GATGTCAGTGGTGATAATAACAAGGGTAGACTGTTGCATAGTTCCAATTA CGTCATAAAGATAAGAACACCTTAATTTGTGAGGAGACAGCGTCAGTTGG TTGGTGACATGTTATTACCATTCGGGAGTGCTGCAGTGTAGAAAATGGTG TTTGTTTTTCATGTACAACAAGCTTGGCCAGGTAAGCAACTTATAAATTT TGTTGTAATGATCAGGTCTAAGATACATATATACAGTTACTATAACTTTC TTCAAGCGTATCCATAAATTGTTGTTCTGGGTAGACTCCTAACAATAGCA ACATACCGTACTTAATTTTACAGTTGTAAAACTGTTGACCTAAATACTGT AACAACTATCTACAGAACTTTGTTAACCTTTTTGTATTTACTGTCACGAA TACAACAGTTACTCAAATACTGTCTCTTAAACAAGGCACAAATACCGTCT AGTACTAGTAGTATACAGTCATGTGGCTCCATATCCATTGTTTTATGAGA ACATTGCACTGCGGAAAAAAATCAATTGGCTATGACCTACATATGTAGAA TGTACATTGTATATGTAGAGAAGGGCTGTCTCTAGCTTGACATTTTTTTT CTCTCCCACTCATGCAATTGGGAGCTCAGCAATGTCACATTGATTTTTGT AGAAGTCAGCCACTTCCAAATATTTTTCATTTCATTGACACATCATTGTG CTGTTTATTTTTGACTGATGACTTGTAAGGATCAGATTGTGGCCTTTTAA GCCCGGATATTCTAGCCTGGGTGCCATTGGATGATTCTATTTATACCGGG GCTGATGATCCCATAGAAAGTAAATACTGGAGCTCCCATACTCTCGCTCC CTCGGAAAATTTTTTTTGAGGGAGCGATTATGGGAGCCCCGTTAAATTAG ATAGGATCGCACCCAGGTTATGTAAAGTCTGCTGCTATTACACACAAAAA AAACATTAAAATATGTTAGCAGATCTTCAGACAATTATGTTACGTTGTTT TTCACATATAAATTAATTTGCATACAAATGTACATGATTACTCAAGCAAC TTGATAAAATTTTCAAAATTTTATCCAGTTGCTTTAGTAGTTATTTCTGG CGTATCTTACTACCTGGATGTCTAACTTTCATCAACATACTGAAGTCCTA TTTGGGTTGATATACCATAAATCTTGAAATGTTTTCAGTGGTTTTATTTT CATGGCAAATATGAATACAAGTACAAATAAGCGGTGATTTCTCCACCTTG AAATCACAACACCACGATGAAATTGTGACTGTACTGCAGAATTTTAACCG TTTTAACCTGGAACTAAGAACCCTGTGGAATCCTCCTTTTCCCCTCCTGT TGCGAAGACCCTGCAAGAAGAAACGAAAATAACCTTCATTTCTATTCTTG TTCCAGAATCAGATAGGAACGACACGCCGGTCCTGGAGAACGTGTACGAC TCCCACCGCAGGAACGTGTGGCGCTTCCACCCGACGTGCCACGGCAACAA CATCTCCGTCTCCTCCGACCGCCAGACGGCGCGGCGGGCCGAGAGCTTCT GCAACGCCATCGTATTCAGCGACCGCCCCTTCCGCATCCAGGAGAAAATC CGGCTGAAATTCACGCAGACGACGGACGGATGGAGCGGGGTGATCCGTTT TGGGTTCACCACGCAGGACCCGAACACCNGGGTGATCCGTTTCGGGTTCA CCACGCAGGACCCGAACACCATCCAGGCGACGTCGCTGCCGAGGTACGCG TGTCCCGATCTCACGAACTTGCCGGGATACTGGGCCAAAGCCCTGCCGGA GAGATATGCGGAAAGGAACAACATCTTGTGCTACTATGTGAGGAGAGATG GGAGTGTTTGCTACTCAGTGAATAACGAGGATAAGGGATTGTTTTTCGCG GGAGTGGACACGTCATCACCGCTGTGGGGACTGGTGGACGTCTATGGGAA CAGCACAGAGATTAAGATCATCGGTAAGACTTTGTACGATTTACAGGTTC CTAATTCGCAATTTGGTAAAAGATTTACAACATACATGCAAAATTCCATG ATGTATTTTAACTGTATTCAACATGTGCACACTTTAGTTTTGTTTGTTAT TGATTTATGTTTGTTAGGTCTGGTGAATATGTAGATTTTGTTAAGTCAGA TAAAGATATACATGTAACGTTACATGTACATTGTATCAGGATACACGCAG TTGGTGTCCACTTACATGTACAATGTAGGTCAATGGCGGAAACAAATTCC TATGTCAAAGAGATGAAAGACTTGATCAGAAAAGCTGATATTAATAAAAA TGTACATGATTTTGTATAGTAGCAGGCTTTTTTTATGGTCCCAAGTAAAA GAATAGTACTGTGTAAAAAACCACATCGATATATCTTAATTGTTTGATAG TTGATACCTACACCCAGCCATAACAAGATCCTTGGAAAAAATTTCCACAG ATTCTCAGGTAGAGCTGTGTACCTAAAAAAATTTTAGGTACAGGTACAGG TACCGGTACACGGGTTCAGGTACAGGTCCGGACCTAAACCTGTACCTGAA CTACTAGTTTAAATTATGGTCGATCTTAAACAATGAAAGAAGCATGTTTG AACGGCACAAGTGCTAAGACAAGTTTGTAGTGCCTCCACTACGTTTAACC ACGGCATTGCAATGTTTACATTTTTCTGTGTTTCCGACAGTTTCCCCCAT GCTCTTTGTCATATGTTCCGAAACTTTGGAACGCGGCATGTCAAATTACC AGTCTGATCAGGCTAGCATGAAAACAAAACTGACAGGTAATGAATACAGT AGAGTGCAGCTACCCTACTAATAGACCAATCAAACCACAGAAAAATGATT GCATCAGGCCGGTAACTGTTTTCAACCAATCATATCGCTAAGTGACTGGC GGCAACTTGTTACAGTTATGGGCCGCGGCATGATAGTAGGCGGTATCAGT TTCACTTTCAGTTCTGACAAAGTCACCAACCCCCAACATCAAAAGAAACC TCACTTATAGCACAAGTGTTAAACAAGTAAATTGTCTGATAATACAGAAG GGAAAAAATATACATTGTGGGAGATGTAGTGCATAATTTTCTTAGTATGG GTGAGAAATCCCAAGCCCTTTGTGCTTCAATGTTGCCTTTTGTGAAACAA AAGCACTGATTAGTTTCTCAGAGTCAGCCACAGAACCCCGCGCCGGTGTG TCTGGGGAGGCGTGGCCACCGTCTCAGAGCATGGGCCACGTGTGTTTATT TTGGGTGTTGCCAGGGAGAACTGGGCTTGCTGGAGTCTGGGGAGGTCTGG GAGGCGTGGTCAACGATTTAGCTCACGTGCCACATGTGACTGTTGCCACT GGGAGTTGGGTATACTGTTTGCAGGGGGAGCAGTGTGTTTTTGCACACTG CTTTAAAACTTTTTGTGACAATTACAATGTCTAGATTATGACTCACTGTT GTCTATGCATGTCTACAAAGTAATCTACTATATTGAAGTGCATTGTGCAC TTATACAATTCTGATATTGGAACATTATTTACAGTACAAAGAGATGTTTA CCCTACTAAGTAACTTGAACTGTTCCGGGAATTCTGGAGAAACACAATCT GGCTGGAACGTGATGAATGGGCATGAATGGGCACTTGTTGGGAAGCAAGT GTTGCTTTGTGAATGGAATTATACCCCACTCCCTGTTTTAAATGTTACTA TTCTTGAGGTAGGCACTAGCAATGTTGTGGTCTGTTCCAAGAAGTATATA TGCATGTATAAACAGTGTAACAGTGTAAGTATATGTTTGATTTTGGCCAG TATCGGTACAGTACCGATATTACAACTTCCGGTATTTTTGGACCTGTACC TGATTGATAATACCGATACTGTATCGGTACTGTGTACCGGTACACAGCTC TATTCTCAGGACTTCTGGGTCATTCAGTATTCAATAGAATCTGATGTAAA AATGCCTTACTGCACAATGTATTTCAATTTTAGAGTAACCCTACGTATGT ATTCATCCAAATAATATTTGATTAAACATTAGATGTGATATTTACTCTAT TAGATGGAGACCAAGAGGAGGACCCTAATGATGCTGGTGCCATGGCGCTG GACCCCTCTGATATCGCTCTGGGTCGTCTCGGCCTCCTCGACACCAACAA CCCTCTAGAAAACTTGACCTTGGAGTCGGAAGGCACCACGGACGAAGTTG ACGACAACTACCCGAACCTCCATCGCCTCCCCGACATTCTATCCGACGTC TGGGGCATCTCGCGTGACTTGCTACAGGAAATGCAATTCTCCACCACGAG CGGGGCCAACGTAATCTTTCGGGAAAACAGAACGGTCGCCAAAAGGCGCG GGAACGAGTTCTGCAAGGGGGTGACTTTCACGAGCCGGCCTCTGGAAGTA GACGAGACAATATTTGTCCAAGTTATCGAGGTCACGCCGAGGTATCTCGG CGGTCTCGCGTTCGGCGTGACGAGTTGCGATCCACAGCTTCTGAACACTT TTATCGACTTGCCCGACGACTCGGAAAGTCTCATGGACCGCCCGGAATAC TGGGTAATCTACAAAGACTTGTCAGTACCGGAGGAGGGAGACCAGTTAAC GTTCACGATAAACAGCGAGGGAGAGCTGCGACACCACGTGAACGGCGTAG ACAAAGGCGTTTTGATCCACGTGGACGTTTCTCAACGACTGTGGCTAGTT TTCGACGTCTATGGAAGTACACAAGCAATTAGAATATTAGGTGAGTATGA TCATGGCCATGACTTGAAGTGTGACATAAAGATTTTGATACATACATTTT GATACATACACAAGAACATTGTAGAATTTCATACATGACTTTGTATCTAC TATTTTCTTT

Coding sequence (CDS) from alignment at Sc0000026:1280573..1288582+

>Blg00160.4 ID=Blg00160.4|Name=Blg00160.4|organism=Branchiostoma lanceolatum|type=CDS|length=1350bp|location=Sequence derived from alignment at Sc0000026:1280573..1288582+ (Branchiostoma lanceolatum)
ATGGGAAACAGCAGCAGTACGTCTCCAGAAAGAGAATCAGATAGGAACGA
CACGCCGGTCCTGGAGAACGTGTACGACTCCCACCGCAGGAACGTGTGGC
GCTTCCACCCGACGTGCCACGGCAACAACATCTCCGTCTCCTCCGACCGC
CAGACGGCGCGGCGGGCCGAGAGCTTCTGCAACGCCATCGTATTCAGCGA
CCGCCCCTTCCGCATCCAGGAGAAAATCCGGCTGAAATTCACGCAGACGA
CGGACGGATGGAGCGGGGTGATCCGTTTTGGGTTCACCACGCAGGACCCG
AACACCNGGGTGATCCGTTTCGGGTTCACCACGCAGGACCCGAACACCAT
CCAGGCGACGTCGCTGCCGAGGTACGCGTGTCCCGATCTCACGAACTTGC
CGGGATACTGGGCCAAAGCCCTGCCGGAGAGATATGCGGAAAGGAACAAC
ATCTTGTGCTACTATGTGAGGAGAGATGGGAGTGTTTGCTACTCAGTGAA
TAACGAGGATAAGGGATTGTTTTTCGCGGGAGTGGACACGTCATCACCGC
TGTGGGGACTGGTGGACGTCTATGGGAACAGCACAGAGATTAAGATCATC
GATGGAGACCAAGAGGAGGACCCTAATGATGCTGGTGCCATGGCGCTGGA
CCCCTCTGATATCGCTCTGGGTCGTCTCGGCCTCCTCGACACCAACAACC
CTCTAGAAAACTTGACCTTGGAGTCGGAAGGCACCACGGACGAAGTTGAC
GACAACTACCCGAACCTCCATCGCCTCCCCGACATTCTATCCGACGTCTG
GGGCATCTCGCGTGACTTGCTACAGGAAATGCAATTCTCCACCACGAGCG
GGGCCAACGTAATCTTTCGGGAAAACAGAACGGTCGCCAAAAGGCGCGGG
AACGAGTTCTGCAAGGGGGTGACTTTCACGAGCCGGCCTCTGGAAGTAGA
CGAGACAATATTTGTCCAAGTTATCGAGGTCACGCCGAGGTATCTCGGCG
GTCTCGCGTTCGGCGTGACGAGTTGCGATCCACAGCTTCTGAACACTTTT
ATCGACTTGCCCGACGACTCGGAAAGTCTCATGGACCGCCCGGAATACTG
GGTAATCTACAAAGACTTGTCAGTACCGGAGGAGGGAGACCAGTTAACGT
TCACGATAAACAGCGAGGGAGAGCTGCGACACCACGTGAACGGCGTAGAC
AAAGGCGTTTTGATCCACGTGGACGTTTCTCAACGACTGTGGCTAGTTTT
CGACGTCTATGGAAGTACACAAGCAATTAGAATATTAGGTGAGTATGATC
ATGGCCATGACTTGAAGTGTGACATAAAGATTTTGATACATACATTTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00160.4Blg00160.4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00160.4-exon-Sc0000026-1570713199:1280573..1280737Blg00160.4-exon-Sc0000026-1570713199:1280573..1280737Branchiostoma lanceolatumexon
Blg00160.4-exon-Sc0000026-1570713199:1285129..1285695Blg00160.4-exon-Sc0000026-1570713199:1285129..1285695Branchiostoma lanceolatumexon
Blg00160.4-exon-Sc0000026-1570713199:1287776..1288582Blg00160.4-exon-Sc0000026-1570713199:1287776..1288582Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:1280573..1288582 +
Properties
Property NameValue
GeneIDBlg00160