Blg00096.0 (mRNA) - B. lanceolatum

Overview
NameBlg00096.0
Unique NameBlg00096.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:2078105..2085160+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00096.0 ID=Blg00096.0|Name=Blg00096.0|organism=Branchiostoma lanceolatum|type=mRNA|length=7056bp|location=Sequence derived from alignment at Sc0000026:2078105..2085160+ (Branchiostoma lanceolatum)
TCTTATAGTTTGATACAGTTGAGGTAACGAGGTCTAGCATGTTGCCGTAC AGTTGTAGTGAGAAGCCCGGGCGGACGGCTCAGAGAGGCGGGAGGATGTT GGTGGTTTTCACGGCGCTGGCTTGCGCGATGGCCATCGGCTTGATCGACC ACAAAATGCGGGGATACGAGGCCGGTATACAGGACTTAAAGGCACAACTG GACGCCAGTGACGTAAGTTTATCTTTCGTCTTCTGTTACCTTCTAGAATC GACAAGAAGGTTATTATTTAGGTGCGGTTTTTTGAGTCGACTGTGTGTGA TCAGTATATGAAACTGTGCACGAATCCTTATGATATCTAGTAAGTGGGTA GGGTTGGAAGGTCAAATTCGACAATTGGCCCCTTAGCGGCTTTCTTAGAT ACAGCAACGAAAATTCCGGTTTTAATATCTCGTGTAAGTTCTGAAATTCT ATAGTCTGTATAACACACATTCCACCTGTCGGTTTTTTTTAAATGTCCCC TCGATCAGACTGGCTGGTTAACGGCGGCTGCCATAAGCGCGACTAAATCA GGCTTAATATGTTATGGTCGTGATTTTAAAGTAGTAGATAGTTCTTGGGG CAGATAGTGAGTGGTGTAGGCTGAGCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCTAGTTTAAGACTTTGA AAGCGAATAACAAAAGAAAGGGGTGACGGATCGTCATGATAATTGTTATG TAGATAGCTTGAGTAGTGATTGACATATTTAGATACTGTAAATCAGACTA AAATTTGAAATATCAATGAGGGAATATCATAATTTAGCTGAAGTCAAACT CTCAAACATGTGATGGAGAGGTTTATCCATCGATGCCAACTAGGTAAATG ACCTCTCGTTAATACGATTAAAGAGAAAACATCATAGTGGTAAATGATGG GAATTTCAGACTAGCGGCATTAGGAAGCTCAATAAAGGTGAACATTCTCA GACCTAAATCATGCAAGTCAAGGCCTCATTTACATAATTCATAAGGAAAT GCTACAATAGCCTTCTTTGCCAAAATGAGACCGTTTTACTTTGAATAATT CATGCTATTTGACCAGAAAGGATGATGAAATGATACAACTTATGCAACTG AAGACCTTATTTGCATATTCAGTAAGTAACATACGTCATTCAGAAAGGTT AACATCTTTTGGCGAAGGTATGAGATCGTGGAACTGTAGTTTTAGGTATT TTTTTTGTTATTTAGGCAGTTCATGTATCAGTTTTCGTGCTAAACGTATC AAACATATACACATAAAGGATGCAGCAGTGCGGTCACGCCGTGCAGCGGA CGATGACGGCATGACACCCTTCCGAGATGAGCCGGTGAGCCGGAGTGTTC AGCACGACTTCCCCGGGCAGGGCGGAGCTCTCTTCACCCGGTGGGGACGG GAGGTTTGCGGGAAGAGCGGGGACTTAGACACCGTCTACACAGGTACGTA ATATGGCTGAGATGCTGTGCAAGCAAGGTAGAGAATGAGTAAGAAACAGA ACATGGCTGTGTGGGCACATGGCTGTGTGGGCTTTAGGTTGTGTTTGGTG TTTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTTTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTATGTATGTATGTGTGTGTGTGTATGTGTG TTTGTGTGTGTGTGTGTGTGCGCGCGCGTGCGTTCAACCGAAATGCAGTT TCAATATGTTCCGCTAGAGAGACTTAGGACTGCTATCTTTGATTGCCTTG TTACAGAATCTTGGTACATGTAGTTACAACTTACGCGTGTTTGAATATAT CTCTTGATTACAGGAGACAACTAAGCCTTCACAGTTATGTTCGTAAATAG TAATTCATCATGTACTGAACGTACCGGAATATCTGCGGAGTAATATAATA ACAGCATATGCTTTTTATTTGCCTTTTGCATGATAAATCAGCTACATATC CTTCTATTGTGTTGACATAAGGCGTTGCAGGAGGGTCGCACTACACCAAA CATGGCGGCGGTTCCAACTACCTGTGTCTCCCCACTCGCAATGTATCATG GGATCACTACACGCCTGCCGTTCAGGTATGTAGCGTTCGACTCAATGCTG GTAATAGATTTCGTGATATCATATCTATATCGTTACAATGTGACTTAAAC CGATTTTCCTCCGCTTTTAACAATGAGAGGTACTCATTGACTCAATTGAC GGAGTCTATGTTTGCCGCACATGTATTCTAATTTTGTTTTGGTTGGTGCG TGCTAGTTAAAAGTAGACCTGCAAGAAAGGCATAAACAGTACTTTTCAGT GGTGATAGAACTTGTCGTGGATCAGACCTGACATTCCAGGTCATAGATGA GACTGCTTATTTACGAAGAGGTATTGTTTTTGTTTTGCCAGAGGTTTTGC GGTTAGACATTTTTCATATGCTAGCCACGTCCATGTTACAGCGTCAGGAG GCATTTACTGTAAGCCTTATATGTATTATAACCATTGTTTAAGATTAGAA ATCCTGTCAGTGTCATTATATAAACGTTACCATGTATATTGTATCTATAA GCCTGTACTTTGTCCGTGATAGGGCATGGATGTACAATAAAGGTTATCAC TTTTAATATAAATTAATGAACTATGGTTAAACAATATATACGAGGACGGA GCCGTGAGATCTTCAAACCCTTATATGGTCATAACCCACGTACGTCGTTT TCTTTTCAAGACAAAGAACTACCTATACGGCTCAGAGTTTCAAACCCACG GACAGGACGGCTTTTTCTCCACCGTCAATGCTGAGGGAATCGCCACCGTG GCAGACTACGACGTGCCGTGTGCAGTCTGTAGGGCCCAGATCCGGACCAG TACAGTCATGATCCCCGCACGGACTTCCTGTCCTAACGGTGAGAATTCCG GGGAGTTCCCTGCAAGGTTTACGTTACTGCAGAGGAGGCATTACAACCTT CCCAGCATTCATTGCAATACACATTATGTAGATACTGCTACATGTATCCC AGATCTGTATCTGTATCAATATAGCTGGTATAACCGCCCTTTTGCGTAAC ACACCAGCTCCACAGGCGCTGGCGCGCGTCACAGGAGCAGCTTGTTCTAC TACAGTACACTGAACGACTTGTCACACCTAACTCCTTTCTTATCTAACTA CAAGTGTTGTCTAAAGATTTCTATTAAGGACGTCCCCACACTCAAATTCA GAGTCAAGTATTTCTTGGGGTATGAGAACTTAGATTTTTCTTGTTGTTAC TCCGGGGAGGAGGTGTGACCTCCATCTGTGAGTATTGGGAATGCTTTTGC TTGCGCGTTCGCAGCTATAACTCACCATCCCGTCGTCGTATCGATGTGTA ACTTGGCACATCGTTTGCCTGGTTAGGTGTGGTGATGCACGATGTCTTTG TTACACCGTAACTACTTTTATTGTCAATGCAATATCGTAATTGCACCCCT ACGATTAATGGTAGTGCCACTGCCCTGCCATAGACACCATGCTATAATCC GTTCCGCTTGAGTAGAATACTTCAGGCAGATACGGGGTATATATCTTTCG TACTTGCTGTGATCGTATAGTCACTGTTACATTGTAAAATTGACAACGTG CATCACCACACGCAACCTAGTAAACGATATACCAAGTTACATACCAATGC GGCAACGAGAATTGTGAGTTTTGGCTGCGAACATGTGCAGAGTGACCTCC AGTCACCGTGTCCACTCGCAGCTTGCATACTGAGTATGTTCGCACGCGAC GGACGGCGCACTTTTACGCACAGTGTGAAAATGGGAGATCTCTGGACCTT CAAAATTACCACACTTGCAGTTTGTAGTACGGAGGCTGTGACAATGTAAA AAGTTATCGCAGGGGATGAAAGATTGTTGAGATATGTATCTCAGAAAAGT GCCCGCGGCCGCGGCCAGACTGTGTCACTTCCGGGTGGATAGATAGAGAG ATCCGGTGGCCTTTGACCTTCGAGAAATGTTACGATAATGCAAAATAGGT TGATAGCTATAGATAAGGCATGCCTGCAATATATTGTGGAAAGAGAATTT TCTGCATATTTGAGATTTCTGAAACATCTTAGTTGTAAGGCTGAATGGTT CGTTGATAAACTTCAAAGGACTTGCCATCTAGATCTAAATTTGTGACTTT TCCCGGAATTTCTAGATCCTATCTGTGCCGTGCTGTAAAAACGCACTTTT CAGCAGGTTGACCCCTCCTGTATTGAAAGAAAAAGATAAATAAGCACCTT TTCTTTATTTGCTATAAAACACTACTTGGACTGTACAGGGATGCAATTTG TGTGGGTCAATGTTTTTACTTCTTTAATTACCGCTTATCAAAACTTTGCA CTTTTCACACCTGGCACCACATACAACCCAAGATTCCGTTGCGGCATGGG CATGTTAAGGTAGCCTGAGTGTCATCCTGTTTCAGTTCCAGGCTCTAAAA ATAAATTGTCTGTGATTCCACACCTTACATCAAGATCCATTTCATGCATT TATCTTACAACAGAGCAGGTCACTANTGTTACATTGTAAAATTGACAACG TGCATCACCACACGCAACCTAGTAAACGATATACCAAGTTACATACCAAT GCGGCAACGAGAATTGTGAGTTTTGGCTGCGAACATGTGCAGAGTGACCT CCAGTCACCGTGTCCACTCGCAGCTTGCATACTGAGTATGTTCGCACGCG ACGGACGGCGCACTTTTACGCACAGTGTGAAAATGGGAGATCTCTGGACC TTCAAAATTACCACACTTGCAGTTTGTAGTACGGAGGCTGTGACAATGTA AAAAGTTATCGCAGGGGATGAAAGATTGTTGAGATATGTATCTCAGAAAA GTGCCCGCGGCCGCGGCCAGACTGTGTCACTTCCGGGTGGATAGATAGAG AGATCCGGTGGCCTTTGACCTTCGAGAAATGTTACGATAATGCAAAATAG GTTGATAGCTATAGATAAGGCATGCCTGCAATATATTGTGGAAAGAGAAT TTTCTGCATATTTGAGATTTCTGAAACATCTTAGTTGTAAGGCTGAATGG TTCGTTGATAAACTTCAAAGGACTTGCCATCTAGATCTAAATTTGTGACT TTTCCCGGAATTTCTAGATCCTATCTGTGCCGTGCTGTAAAAACGCACTT TTCAGCAGGTTGACCCCTCCTGTATTGAAAGAAAAAGATAAATAAGCACC TTTTCTTTATTTGCTATAAAACACTACTTGGACTGTACAGGGATGCAATT TGTGTGGGTCAATGTTTTTACTTCTTTAATTACCGCTTATCAAAACTTTG CACTTTTCACACCTGGCACCACATACAACCCAAGATTCCGTTGCGGCATG GGCATGTTAAGGTAGCCTGAGTGTCATCCTGTTTCAGTTCCAGGCTCTAA AAATAAATTGTCTGTGATTCCACACCTTACATCAAGATCCATTTCATGCA TTTATCTTACAACAGAGCAGGTCACTAGCAAAGGAGATTAACAAACACCT CAATTGCAACCACAATGTACAGACTATAAATACTTCACGGAGAATTGTGT CCTACGGACTCTTGTTTATATTGTGTTCTTTTTTTGTTTATCTCCAATAG ATTGGCACATGGAGTATCAAGGTTACCTGATGAGTGCCCACGAGACCCAC CAAGGTCGCACAGAGTTCGTCTGCGTTGATAAGAACCCGGATGTGGCCAT TGGCACGTACGAGAGCAAAGATGGCGCCCTGTTCTATCTCGTGGAAGCTC AGTGTGGCTCACTGCCATGCGGGCCTTATATAGCTGGGCGGGAAATAGCC TGCGTAGTGTGTACCAAGTAGCATTAACACGGGACTATCTCTGTATTGTC TCAGCTGACGTCTTCAAGCTAGGCAACGAGACAAACTTTCACTGCACGAA ATTGCCTCGGATCCCGGCGGATACGTACATGGATTCCTCCGGAAATATTC CAAAGCCCGTACGCGTGCGGACTTAGTCGGATCCGTTAGTTACGTTGGGT CCGTCATTATCCATCAGTATCCGCCAAAATTATAGAAGAATCCTTGTACG TATCTGTCGGGATCCGAGGCCATTTCGTGCAGTGTTTGTTTACGTATACG TTTCTTTAATAAGCCAGCTCACAGTTCAGAGGATTGTGAATAAGGTCAAA GATTAAGATGCCTAAACGAGAACAAAATCCACGTGGGCAACACAAAGGGC TGTTTACAAGATAGGAGTCTTAAACTTTGACCATAGACCACAATGCATTG CACTGCGCATACTCATTCGGAACTGTGAGTTGGCTTATAGATAACAAATT ACAATGTCAACATTGCGCAGCGCAGCAGTCGCTGACATATAGCTTTGCTG TATGAATTGTCCGAATTCGTCCCGAAAACCTGAATAATACTATGCAAACA TTTATTCTGTTACAGTAACATATATGATTTGTAGCCAGTATCAAAATGTT CCAAACGTGTACTACATGTGAAATGTACATCTGTAGGAATAATTTCTATT GAAGAATATCGCACATTACTTTCGGTGTTCTTACTGTTTTACTGTTTCAA CTGCGATACTATGAAACTGATCAATCACATCATGTTAATAAACAATCAAG CTCTCG

Coding sequence (CDS) from alignment at Sc0000026:2078105..2085160+

>Blg00096.0 ID=Blg00096.0|Name=Blg00096.0|organism=Branchiostoma lanceolatum|type=CDS|length=852bp|location=Sequence derived from alignment at Sc0000026:2078105..2085160+ (Branchiostoma lanceolatum)
ATGTTGCCGTACAGTTGTAGTGAGAAGCCCGGGCGGACGGCTCAGAGAGG
CGGGAGGATGTTGGTGGTTTTCACGGCGCTGGCTTGCGCGATGGCCATCG
GCTTGATCGACCACAAAATGCGGGGATACGAGGCCGGTATACAGGACTTA
AAGGCACAACTGGACGCCAGTGACGATGCAGCAGTGCGGTCACGCCGTGC
AGCGGACGATGACGGCATGACACCCTTCCGAGATGAGCCGGTGAGCCGGA
GTGTTCAGCACGACTTCCCCGGGCAGGGCGGAGCTCTCTTCACCCGGTGG
GGACGGGAGGTTTGCGGGAAGAGCGGGGACTTAGACACCGTCTACACAGG
CGTTGCAGGAGGGTCGCACTACACCAAACATGGCGGCGGTTCCAACTACC
TGTGTCTCCCCACTCGCAATGTATCATGGGATCACTACACGCCTGCCGTT
CAGACAAAGAACTACCTATACGGCTCAGAGTTTCAAACCCACGGACAGGA
CGGCTTTTTCTCCACCGTCAATGCTGAGGGAATCGCCACCGTGGCAGACT
ACGACGTGCCGTGTGCAGTCTGTAGGGCCCAGATCCGGACCAGTACAGTC
ATGATCCCCGCACGGACTTCCTGTCCTAACGATTGGCACATGGAGTATCA
AGGTTACCTGATGAGTGCCCACGAGACCCACCAAGGTCGCACAGAGTTCG
TCTGCGTTGATAAGAACCCGGATGTGGCCATTGGCACGTACGAGAGCAAA
GATGGCGCCCTGTTCTATCTCGTGGAAGCTCAGTGTGGCTCACTGCCATG
CGGGCCTTATATAGCTGGGCGGGAAATAGCCTGCGTAGTGTGTACCAAGT
AG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00096.0Blg00096.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00096.0-exon-Sc0000026-1570713199:2078105..2078316Blg00096.0-exon-Sc0000026-1570713199:2078105..2078316Branchiostoma lanceolatumexon
Blg00096.0-exon-Sc0000026-1570713199:2079823..2079997Blg00096.0-exon-Sc0000026-1570713199:2079823..2079997Branchiostoma lanceolatumexon
Blg00096.0-exon-Sc0000026-1570713199:2080526..2080629Blg00096.0-exon-Sc0000026-1570713199:2080526..2080629Branchiostoma lanceolatumexon
Blg00096.0-exon-Sc0000026-1570713199:2081265..2081442Blg00096.0-exon-Sc0000026-1570713199:2081265..2081442Branchiostoma lanceolatumexon
Blg00096.0-exon-Sc0000026-1570713199:2084155..2085160Blg00096.0-exon-Sc0000026-1570713199:2084155..2085160Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:2078105..2085160 +
Properties
Property NameValue
GeneIDBlg00096