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Blg00088.0 (mRNA) - B. lanceolatum

Overview
NameBlg00088.0
Unique NameBlg00088.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:1326111..1332217+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00088.0 ID=Blg00088.0|Name=Blg00088.0|organism=Branchiostoma lanceolatum|type=mRNA|length=6107bp|location=Sequence derived from alignment at Sc0000026:1326111..1332217+ (Branchiostoma lanceolatum)
GTGTAAGTCAGGAAATGGTCAGGAGAAGCTTTGGGCCGCGGTGTTGCGTG ACGTCGTTGGACTGAGCCATCATGTTGGTGGCTAGGGGAGAAATTCAGGT GTGATTTTAATCTCTTTTATATAAAAGAGTCAAACTCCTGCGTTTTTTTT CACCCAAACAAACATGATAAATCTGTCCATGCAGTGGGAGTACAGGCTTG AGGTTTTAAACATCGGTAAATTGTGTTTTGAGTTAATCATTTTTCAGCAT TTTACCCAATGTGCATGTGGCAGGCTGATCCGCATAATTTTAATAAGGGC ATGTCCCGCCGCATGTTATATGCATAGATTAACGTATTTTTCGTCTGCAT TTTACAGGACTACACGTAATTTCCGGTGGTTCCTATATTGACAGGAAAAA TGACGGAACAACAACCAGTGGCGCTTACAGCCGAGAAGAACGGTAAGTGT GAAAATAAAACTTGTCTTTAAAAATATTGAGTAATATATTTTATTGTCGG TTTATTGTCTAGAAAGGCTAAAAGTGGCCTTGAACAAGACAGTCTTTCAA ACAAGACAGTAGTGGTTTACCGAAGTCTCAACACCAGTGGCGGCTTACTT TACTTAGCGAATGGCTATCGAATAACTACTCTGGGCCGTGCTGCAAAAAA TATCAATAATCAAATGTTTGGTGTCTAAACGGACTGTGTCTAATGCGCTC CCATGTAGTAATTCCGTGTTTCAAGTCAATCCACCGACCCGTCAATAAGT CGAAGTTTACAAATCATTACTTCCGACGGTCTCGTTACTAATGACGTCCA GTCCACATCATGGTACTGGCGAACGATCAGTCCAGCCCGCAAAATATCCT TCCCCGCGCAACCAGTTTTAAAGCCACCACCGCAAACATTTTCAAGAAGG CATCCTTTGTATGCTTGCTATGTTTTTATGCTGTATGCGTTTTTAGTACT TTGGGAAGGTGAAAACTACGGCGCGGTCGATTCTGTAAATCGGTGCCCGC TCTGTATGTCCACACCAACTTGCATGGATTTATGCAAATGTTACAAAGTA TCAATATGGCGCCGAACATGTCCTATTTTAGAGTTAGAGGATCTAAAAGC CCCTGGACAGTATGATATATGATTGACTCTTTGCTCTTTGCAGACCTGCG GAAGACAACCCCGAAATCTCCCCTGACTGTGCCTTGTGAGAAGTGCGGCC ACCACACACCTGTCCCTGTGGTCAACGTCTTCAAGAACTACAACATCACA GAGTGTCAGAATGTCCAGTGTTCGAACAACAACTCCATAAACATCGGAAC TACAGAGGACTCTTCCGATTGAACAAGGACCCGCCTGTCGTCTTAGTGGT TTGTTACACTTTGGGCGGAAATTAGAAGTAAAAACTTCAACCGTCAGTGG AATTGTCCGAAGATACAATGTACAGGTCGCTGGGTCCCAACAATCGACAT TGTCTAAAAATAAATCGGCAAGCTAGTACATTGTAGTAGTAATACGAGTA GTGTCTTATTAAGAGTACAATTTCAATTCATATCACTACATTCGTTGCCC GAAGCCTGTATTAAGATGCTGTGACATCGCAATATATGCTATTGATAAAA CAGCGCAATAACCAATATTTACAAAAAATACGTCAAATCAGCGTAGTAGA TAAGTTTCGTACAAGGGAGTTGAAATATTTAGAAAAATTAGAATTTGTAG TAATTAAGTACTGTATACGTACCTGGACATTTTATTCAAAATAAGTTATA CTGAATACACTTTTGTTTCGCACTATCTACTGTAAGAATAGAAACATTGA TATGAAAATCCGTCTGAAGACTGTATACAACCTGGTTGACTCGAACAAAC CAGTATCTTAGAAAAAGCACACAATGCAGACAGTTTGATATGTAATGTCG AACTTTTATTGCTGAGTGGTTATTTTNGCAATGTTGAACTTTTATTGCTG AGTAGTTATTTTAGTAGACTGATCGTACATGTACAATTTAAAGATCAGCG CAGATCAAGCTGAATCGCTTACTTATTTTATCATCAAATTAAATGTCAAT CTTAAGCTTGCTTGTTCACTCTGTCAATAACCATAAGACCCTACCTGGAA CAGCGGTTATGTGGTTCACACGTCCAAGGAACGCCTTACTTGAAAACAAT GTTGATAAAACAGGTACCGACTCGACAAAATCCTCGAGTTTCCCAGCTAG ATTTTCACGCAAATAAGTCGATTTCAGTGTCCTTGATGGTTTAAAAACTT GTGCACGGTCCAAAATGTCCGCCATTTTAAAAGCACGTAGTTACCATAGG CTTCAACGGTCGAACAAAAGAAACAGTCCATACTGAGCACAGTCCTGGTG AAGTTTCAAACAGACAGTCCCGTTCTGTTGTTCCCGTCTACTAACAACTG CACGAATCCATATTCTACGTTTCGACGTCATGGCGGGAAGTAAAATCCTC TGATAAACCCCAAATATGCGAATCTGACGTTTCCGTGGAACACTGACACT AAATAGCCAAGTTGCACACACCTGTTTACGTGACGTGTCATGTGATAGGC TATACCATCTGGAATGGTGTGTGTGTCCGGGAGGGGGGTATTCTGCTTTT ATGATGAATACTTTGTAAACACACTGTGTACTATACCTAAATGTTCCACA CTTGATACGTAATAAATGTAGATGAACAGGCTCTGTGAAAATCAAGAGTT GAAACTTTTTCTATGTTTCGGTGAACCATGGGGAGGGACCGATGAAATTA TTTTCTATTGGGGCGCATGGTGAAGACACGGACTTTGAAACAATCATATT CAAAATTCACTTGAATACATTTCAGACCTCAAGTCTTTATACTCATTGCA AAGCAGGATTTTTCAGGTTCAGTTACAAAATTTCGGGGGACAACTTCGAC ATATATCAAAGAGTTACGAACAGAAGATTAAAATGACACCAGGATATCAC CCCCTGTCCCAATGAATCAGTCTAGCTATTAAAAAAGCAGTCATCTGATT TAAGGGTTAAGTTACAGGTGAAAACAAGGAAAAAGTCACAAATTTGGGCA CGATACCACAAATATACATTCTTCTGTCCTCCCTACTAGGAAACTTGACC TTTCTAATGAAAATGCCCCCCCCCCCAAGAAAAAAAAGCTTTGAAAAATG AGTCAAAATTGAAACAAACATTTTTTTGCCTTTCTTGTAGTATTCTTGAC ATTCAAACAACGCAGAAGCTTTATGTTTATCTCTTTCGTGAAAGATTGTT GACCTAATGCAGAATTTTCAAGTCACACTAAGTGTGCTATCTTAACTATA TCAAAAGATTTATCAAATACATCACCAGATATTATACACATTTCTGAGAT GATGGACCGTACTTTTTATCAAGAATCCTGTTCTAAGTCATGTCTATCAC ACTTGCAAGAGACGCTTTATTTTTGTGCGTGTTAGAAAAGCCCATGAGAA TATTCTTTGTAATTCTATCTGTATATGTACAAGACGGCCCATATGATAGA CACAGACTGATACAATACCTGCAATTAATGTTATTTACTATATTACAAAT GCTGAGTCGAATGATTGTGTTTGCCCGTGCCTTTTGCCTTTGTGATTTGT GATCTAAAAAAAAAAGCTTAGTTCGCCAATGGGTTAGAATGCTCGCCTTG CATACAGAAGGTGAGAGGTCCGGTCCAATCTTTGACCGAGTCATACCAAA GGCTTTTTGAAAATATCATGTACTATTTATCGATCTCTGCTTGGCACCTG AACCTGATAAACTCGACAAGAAAACACCTTGGTAAACACTGCCCTTACTA CTGTAATTCTCGATGGTGTTAACTGTAACTTAATTTGATCAGATTTAACG GTCACAGCGAAAATTTCATCATCGCAAATATTTGATCCCTGATATTTGAG ACAGTAATGTTTGTTCCATTGAAATAACATGTAAGTGCCGTGACCTACTC CATTTTCCCCTAACCGCTATATTTTACTGCCGATATACTAAAGTGATGTA CAGTAGTATTTGATCATATAGGTAATCTATTTATAGGCGATTACTTGTAA TGGTTACCAAATATTCAATAGTAACCATCGGTAACCAGGTAAAATCGTGT AGTCAAGTGGACAAGTTTTGAGATAAGGACTAGTCCCTCCACTGCTCGGC CTAATGACGCCACATGACTCTGAGGCCGCCCACCACTAGTCCCACCACTG CTTGGCTTCATTCACCACCCTGGGCAGCTAGAAACGGAGGGCAACGTCAA ATTGGTAATGATTTAAATTTGTCCCGTATTTGAGTTTTCCACTTAACTTT TTGCTTGATGTCGGACATAATTCTGACACGTACAAGGTAGAAAGGTGCCG CATTTTTTGTCATTTTTTTATCATTTCATATCCATAGCCTATTGCATTTT CTGTCTGCCCATTACAGAAATATTCTTTACTGCCGGTGGTTCATACTTTG ATATTAAGAAAAATGACAGAAAAACAGCCAACGGTGTTTGCAGCTGAGAA AGGGTAAGCGTGATCTTACACAAAGCTTCCCGTAGATTCCGTATATCATA TAGTCGGTTTATTGATATCTAAACAAGCTTAATTGCTGTTGAACTAGAAA GTATTTTGGACAAGTTGGCTCCATGCAAGAACACTTAATATGTGAAAACT CAACTATCATTCTATTCCAGTTGTTGCTTTTGATTACAATATGTAAGAGT TACCTATTTAAATGATGAATCCAGTGTAGAGAGACTTTTTCCAAGGTACG ATTCGCCTTCAAAAGTTCTCTCGGCGAGAGGCAGTGTACTGCGTGTAGAG ATTTCATTTAGAATCCCTGTATAGTCTGATATCTGTTTTATTTTATGTTC TTCATAGAGCTGCAAGCCAGTTTATGGTAAATCTGAATAAATGAATAAGA AGTATAATGACACGCATATCTCGGTTACGCGATTACCAATCACGTTTTGC GTAGGCATACTTGTAGCAGCGGAACTGAGTGTACACAAGAATTAGAGTTT GAACTTTAATTTATTCTGCTGGTATCTACTCCGTTACGGTACGAGAATCT CGGCCCACCCAAAATAATTAAAGGAATTTGAGTCCATAATGTTAGAGTCA TCTCAATGTTCTTCATATGAAGAGCTTGTAGGGAACTGTAAATGCATTTA AGTTAGCGTGGTTTTTATTTCGCGCTAGGCGAAAATGGAGTGTTTGCGGT GTTTTTAAGCCCGCGGCAGTGCTTTAGTCACATACTGCTCCAGTATTTTA GCAGTGGGTTTAAGTTCGCGGTGAAAAGGTCGCCGCAAAAACAACGAACA TAAAACCACCGCGAACATTTCTGCATTTACATGTACAGTACTTCGTCGAC TTTAAAAGTGAGCGGCAGTGTACCGCATGCGTGTAGACAGTTAACGTTCA ATTAGAAACTCCGTATAGTCTGATTCCACTAAGTCTTAACTTAGACATAC TAAGCATAAGTTTAGTCTGATTTCTGTTTTATTCCTTGCCTTTCACAGAT CTGCAAAATACAACCCCGACATCGCCCCTGACTGTGCCTTGTGAGAAGTG CGGCCACAACACACCTGTCCCCGTGGTCAAGACGACTGTGGTCAAAATCT GCAAAAACTACAACATCACAGAGTGTCAGAATGTCCAGTGTGGGAACAAC AACTCCATAAACGTCGTAACTACAGAGGACTTTGACTAAACAACCCGCAT GTAACGCAAATACTCTATGGGGGAAACTTAAAGACAACGCTTTTGGTAAC CGCTATCGCAATGACCAGAAGATACACTGTATTCTTGATTGAACTTTGAA GTAATAATCTGAAGGGACATTCCGGTATTCTATGGATTAGTAATTGAATG TTACGAATGTTTGAAAGACACAGGGCTAAGCATATAAATGAATGTTTGGA AAATGAATAACTTTTCTTCAAGTAAATGTTTTTGTCTTTACGTGTATCAT TTTACTTTTGCAGATTATTGCACTCTTTCTTTTACTTTAAAAACGTTGAA ACAGGAACTTTTAATCTGTTTTAAGGCTGTATTTACCCAACCTAACCTAC TTCAACAGACCTGTACCTTAAAAACCCATACAATGCAGGTAGTACATAAG TTGATGT

Coding sequence (CDS) from alignment at Sc0000026:1326111..1332217+

>Blg00088.0 ID=Blg00088.0|Name=Blg00088.0|organism=Branchiostoma lanceolatum|type=CDS|length=234bp|location=Sequence derived from alignment at Sc0000026:1326111..1332217+ (Branchiostoma lanceolatum)
ATGACGGAACAACAACCAGTGGCGCTTACAGCCGAGAAGAACGACCTGCG
GAAGACAACCCCGAAATCTCCCCTGACTGTGCCTTGTGAGAAGTGCGGCC
ACCACACACCTGTCCCTGTGGTCAACACGACTGTGGTCAAAATCTGCAAA
AACTACAACATCACAGAGTGTCAGAATGTCCAGTGTGGGAACAACAACTC
CATAAACGTCGTAACTACAGAGGACTTTGACTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00088.0Blg00088.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00088.0-exon-Sc0000026-1570713199:1326111..1326208Blg00088.0-exon-Sc0000026-1570713199:1326111..1326208Branchiostoma lanceolatumexon
Blg00088.0-exon-Sc0000026-1570713199:1326468..1326552Blg00088.0-exon-Sc0000026-1570713199:1326468..1326552Branchiostoma lanceolatumexon
Blg00088.0-exon-Sc0000026-1570713199:1327254..1327336Blg00088.0-exon-Sc0000026-1570713199:1327254..1327336Branchiostoma lanceolatumexon
Blg00088.0-exon-Sc0000026-1570713199:1331692..1332217Blg00088.0-exon-Sc0000026-1570713199:1331692..1332217Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:1326111..1332217 +
Properties
Property NameValue
GeneIDBlg00088