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Blg00087.1 (mRNA) - B. lanceolatum

Overview
NameBlg00087.1
Unique NameBlg00087.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:1163885..1170968+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00087.1 ID=Blg00087.1|Name=Blg00087.1|organism=Branchiostoma lanceolatum|type=mRNA|length=7084bp|location=Sequence derived from alignment at Sc0000026:1163885..1170968+ (Branchiostoma lanceolatum)
TGAAAAGACTTGTTTTTTTTTTGTCTGGAAAGTTTGTTGAGCGTAAACCG TTCAGTCGTAGCGAGGTCACCGCCATGTTGGAATGAGGCGTAATACAATG CAAGTACCTGTGTACTGTAAAAGTAATCTACAATAGTAAAATAATATTAG AGTTTGAGCAAACACATTGTATTATCGCTTTAAGATTTTGGTTTCGGAAG TTCGGACGGAAACTTTGTCACGTAGAGTATTTCACAAAGGGCCGGTTTTC CGGTGTGAAAGAGTTCAGAGACGGTACGATACTACTACAGTCCAACTTAG AAATACATTACGTAGGATCAGTGGGATTGAAATTTGAGGAGTCATAACGG CTTCTTGACTAAAATATGTGAAAGAATAAGGAACAGACACACACCAAAGA AACAGCTAACAAAACAGAACCCGCTTAGCCGACTACTCATGTAATAAGTA CTCTTCGGCGCAGAGGTGTTGCGGAAAAAAAACCGTCAAACCGGTTTGTC TACTCGACTACTACATCAAATGGGCTAAGAGCCTACGATTTCCTGCCCGC GTTTTCATAACACATGATTTGGGACGTGTTAGTTTGGTGTACTTGCTAAG AACATGGCGTTTTTGCTGAGAAAAGGACGACAATGTTGGTTTGGTGTCCG AGGCCTGGCGACTTCCCATAGACCAGGGGTTACAACGGTAACCGACCTTC CCGACAAGAACACGGAGGTAAGACATTCAATAGCAACGATCTTGTATTGT GAATGGCATCGTTTGGTGCGTAACATTATCTAATACCAAAATGTAAACTT TGTTTCCTGAAAATCAATCATACACCCAATACAGTATCAGAAGATTTTTG CCATATTTGGCTTCGCGGCTTGGACTCATACTGCGATAGTCTGGCATGGT GTTTATGGTTCAGACTACATACAGCCTCACAAAGACATACACACTCATAG ACAAACACACGTATTTAGCTAGTATGTATCCCTTGAAAATACAAGTGTTA AATGACAAAATTCTTGTCAACAGACTTATTGTAAGCAAGTCTGTACATTA GATGTACTTAAAATGTCAATATGCCAACGTGGCTACTCTTATTTCAATGG CTACTATATGTCAAAACTTGTCTGGACTAAAACTTTGACGATCAAAAGGC GTATTTTTCTGTCATTTCGAGAGAAGTGTAGTCTCCGATGAGACGATGAG AAATAATTGAGTATTGTGGCCGCTTTTTTGTTGTTGATAGACTTCTTTCG CAATCTCGTTACTACTAGTACCTTATTTGCAGCCTCATGTAGCGACGTGA ACCGGGAAAGCTCACACAGACTTGTAGATTAATTACAATCAGCGCAGGTC TGCCTCATTTGAATTCTAAACGAGCTAAAACATGATTAGAATAGCTCAGC GCGTTTTGAATACCAGCTTTTTTGGGGGAGGGCGACATAATTTAGAAGGC AACGTCGCCACTATATTTAGCCAGTTTGACACTTAACGTTCAAGAGATAT TTATGTTTGTTTGTCCGTTCATTATCTTCGCCGAGTACTATAGTACTCGG GGTAGATTATGTTTTCGGTTGAGCCAGCTGTTTGGTGGGTCTGTATGTAT GTCAAGAGCATAACTCAAGAAACCTTTGATGAATCTTTATGATTTTTGGT AGGTGTGTAGTGGTTGTGCAAAGGAAGGTCAAGTTCAAAAATGGTTTACC TTGCGTTTTTCAACAGTACTGCAGCGGACTTTTAATTTTTGTGCGTTTGT ATGTAGGCGAAAAAAGTGACGGAAACGTTGATGGATCTTCATGATTTTTT GCAGGTGTGTAGATGTTGTGAAAATAGAGATCAAGTTCAAAAATGGTTCT CCTGGCATTTTCCGTCGGTACTGCAGCGGGCTTTGTGTGGATGTGTAATT CTTGTGGAAAACATAACTCAAGAAGCTGTTGATCGATCTGTATGATAGTT AATGGATGGGTAGGGTTTACGAAAAGGAAGGTCAAGTTCGATAATGGGCC TTCTAGCAAGTACCTAAGGTACTGCAGCGGAGCTTCAAAATTTAGTGGCA TATTTTCTGAAAGTGCTATGGTCATGATATTTGTGTGGTAGATAGTTCAT GCCACAAGAAGTAAGTTCTGTAAGTTTGGGCCCCCTAGCGGCTTGTTTAG AACTGCAGTGGGTGTTTTTGTTTTGACATTCGGACACGTATTACTTGAGA AGGGGTGAAGAGATTGTCGTGAAGTTTTGTATGTAGAGAGCTCAGATGGT GCTTTACACAATCGATGTCTAATTATAGAAAACAGGAGCTAATCTGCATA ATTAGTAAGGATAATTGTAAATCCATTACATTCCATAATGGGGCGTGTGA CAGTGTTCCCGAAACAGGCCAGCAGAAGGCTTTGCCCAGAAGTGTAAATA AACAGATGGTGTACATAAATAAACAAATTGGGTAGTCTCACTACAATTCA AGCAGATGTGTGGGTCCGGTTTTTTTAAAGTGTTCAGTTTCTGCATTTTT GTCAAACACACGGTTGGAGACATAACGGAAAGGGAACAAAATAGAAAGCC TTACAAAACACCTAAAAACATGTGAATAACCAGCCGGACCAACTCCTCTG CTCAGAGAGTACACTGCTAGGTATTACCTAGCACAGTATGGAAAAGTAAC ATGTACTATGTCTTGCAAAATGTGTATGATATGGAGTAAAGATTTATTCT ATTCATATATATTGACTGTACCATCTAATTATAACTTTCAATTTTTTTGA TGACCAGTTATAACATATATCAGCACACTATACACATATACTAGTCCTGT ACCACCAAATGAGTTTTATCCCTATCTAGACTGGACTCATTCTCCCCCCC CCCCTCATAACTTTCAAACGGTATGGTGTATGATCAAGTTTGCAGGGGGT GATAAGCATGTAAATATTAATCACTCTCCACAATAAGCCTTGATTATTTG GCGAAGATAATGTGTTCGTGGAACTCTAGTTTAGTCTTTCATTCATCTGC CGGAAATAAAGGTAGATAACGAAAATACGCAAGTAACTTTATTCATTCAT TCATTCATCCTTCCATTCAATATTTTCAGCGACTGGAAGAGAAGACAAAA ATCGAAAAAGCAACTTCAGTCGACAGAGGTCAGTTTAACGTGCGAGTGGT CACCAAACACATCGAAGTACAGTCCACGGGCGACCGCACTCCTCTAACTG ACGACAGACCGCTCGTCCTGCTCTTCTCCTGGCTGTACGCTAGCAGGAAA GTGCTGGACAAACACCGCGTCTTGTACCACCGGCGGGGGTACGACGTCCT GACGGTGAGAGGGGACCCTCGCTACGCCTTCTCACCGACTGGGTTCGCGA AGAACATTGCCGTAGACGCCCTGAAGTTCCTGAAGGCTGAAGCCAATCCG AAACAGCCGTTGCTTTTGCACACGGTGTCTGTAGGGTGGGCTCCGTACGT CATGCTGCTGAAAAACGCACGAGATGATGCAGAATATGGCGACGTTCTGG GCAGGGTTGTCGGGCAGGTGTTGGACGCTCCGATCGGAGACACGAGGGGA TGTGCAGTCGGAGTCGGGAAGTCCATCAACAATCCCGTCGGTAGGCTGCT GTACACCGCCGGGATCTGGAGCTTCTTCACGTTCGTACCGGGAGTGCTGA AATCACACGATTTTGTAGGCAACATTTCATTTCACTATTTGTTTATTTGT TTTTGTTTTTGTTAAACAATGTACATGTACTGTTGTACAGCCAGTGTTGC TTAACTACGACAACCTCATGCAATGTATGCCAAAAGTATTAACAAAGCCC TGTACGCACATGTCCTAGGCAGTCCCGTGCCACATTTGGTATGGTACTAG TAGACCTGAACCAGAAATGCAAGCTAAATTGATTAACTCAATTGGGCAAT CAGATGCTCGCAGTTTGAAATCTAAAAAAAGGCACTTCCAACACTGTATA TGGCATTGGAAGTGCCAGAAGTGGCAAAATATTTCCCCAAAAAATCAAAA TAAATCGTTTTGAAGAGGTTTATGCCAAAAATTGGAATGTAGTCCTTTAA ATATTTGTTTAAGGCAAATTTCAGGTCATCCAGTTGAAATACCAGGGCGC AGGAGGCCGAGATGTACATTTTTGGTCTAGAAATAGCCCCAAAACGCAAT AAAATCAGTTTAAAGGTATATATCGAGAAAAAAATGAAGAAAAAACAAAC ATCCAGGGGGTATTTGCCTACCCTACCTTTGTGCCAAATTTCAGGTCATT TAGCCAAAAAATGACAAATATGAATCGATTTGACGATTTGACACGAGGAG GAGGAGAAGAAACATGAAAGAAAACAATGTGTTTAGCCCATACCTATAGT ACGGGCGAAACATAACAATCAATATCATAGGTAAGCAATCAATATGTTAC TAGCCAATCTTTTGCGTCATTCATTCAGTTAATCTGTTTTTTTTCACCCG TTTATTTTACTTGAATGGGTCTTTGTGTGTAACAAATTTGTTTTAAAAAT GTAAACGTGTTGCTATAGTTAAAAATCAAAAAAATGTTATTAGACAATTT TGTGACGTTGAGCATCATTTTTATAAAAGATTGTCTCGTATAGCGTAAGT TGCACAATGCCTGCCACTAGTCATAAAATACATTGACTTCTACAACCTCA TAGTGAGAATATATAATTGCAGACATGTTTTCATGACGGCATTTTTTTCT TAACCCCGCCAGACACGCTCGTATTGGGAAACACAGATTCTGAAGACTCC GATTCTGTTGTACGGTTGCCATAACGACCCGATGTCTACCAAAGAGTACA ACGAGCGCTGCGTCGAGGGCTGGCGGAAACTGGGCTGCGACGTCCGGCTG CAGTTCTGGGACAACTCCTCCCACTCCAACCACATGAGGGTTCACAGAGA AGAGTACGTCACCGCCTTAGACAACTACCTGGACACTTTAAAACTGTGAA TGTAGTTTCTGACTGCAGTACTGCTTCTCACCGCTATAAGTAGCCGATGT CGGTGGCGCTTTNGTAGGTGGCGCTTTTGCGGCGAAAACGTAATCAAACG TAAATGTAGTGTTTGTCAAACATGCACTGGTGATGTCCACCTCCGCACGA AGACCTCGTGGACATATTAAATTTAAAGTTTATTGCAAGTTCTTTTGTTT TTGAGTCTGTACTCGCTTGGTGTGAGTATTATTTGTGCAAATGTCAACCA ACTGATGTTTTTGTTTATGTATACGTAGAGCTGGTGTAAGTTGTTTATCG TACCCAAGAATGTTATTGTGCTCTTGTATGTGTAAGGATGATGTTTTTGT AAACCTGGCGTTTTCTATATGAGAATGTTGTAATCTCTTTGTTTTGCAAG GCTGGTGTTGTAACAGTAAGTATTGTAGCCTGATTTTGTGTATTTGTAAA TTTGTAACGTTTGTCTTTTTGAGTGTTTCCCTGAGGCTTGTTTTTGTTGT TGTGATTTATGGTATTTATGTATTTGTACTGATGCATGAATCTTTGTATA TGTTTCTGTTGTTTGTTTATATACGCTTGTTCTCACATCTTTTTTTTCCA TATGATGTAATTGGCTGATATGATGTTAATGTAGTTTTTGTTTTATATTA TTTTGCGCCTGTATAGCGGTTATTGTGCGTTGATGAAGGTTAGACATCCA GGTAATAAGATACGCCAAAAATAATTACTCAAGCAACTGGATAAGATTTT GAAACAGTCAGACGTTTCAGACAGTATCCACTGTCACGTCACTGACGAAA GACAGTGGATACTGTCTGAAACGTCTGACTGTTTCAAAATCTTATCCAGT TGCTTGAGTAATTATTTTTGGAGCGGTTATTGTGATTTGAATGTGTAAAG CGTGTAATGTTTTGCATTATGTTTCATTTATAAATGTATTTTGTAATTTT TTTGTAAAATTTGTAATAAAAGCAAACAATTGGTAAGTCTTATATTCAAA ACACAGGGAAGGAAAACCCTGCACAGAAACCCAGGGATGACATCCCTGCA CAAAAGTCCTAGGGAAGAAACCCTAGCACAGAAAATCCAGGGGGGATGAA ACACCCCTGTCAAAAAAGTCCTAGGGAGCACACCCNNNNNNNNNNNNNNN NNNNNNNGGGGGGGGGGGTGAAACACCCCTGTCAAAAAGTCCTTAGGAGC ACACCCTAGCAAGAAAAGCCAGTGGGAATGACCCCTGTAGATATATGTAA CTAGGGAGCACACCCTAGCGCGAAAAAGCCAGTGGGAATGGCCCCTGCAA TAATATGTAACTGTGTTTATTTGTGGAGTTGTAAATGTGCAATGTTAACA TGTTGGTATGTTATGTATTTATGTATGTTCGAATACAAAAAAAAAATTAC AAGTTCTTGCCCGTACGTAGGCTAATTGCAAGTACATATAACATGAAAGG ACGGACAGACAATTGGGTAACAATAGAACTTGTGACTATTCTAGTCTAAA TACTAACACTAAATTCTAGCTTATTTTGGTTTGACTTCTTTTTCCAAGAC AGTGGTAGACGTCGAATGATCATACTTTTTTTTGTATGGTCAGGTTTGTG ATGTTAAGAGGAGAGTATACGTAGTTTTCTTTTTGCCTGTAAACTTCGAG AAATTAGGGTGGAATTTGGTGGCTTCTTTAAACGGCTCCTTTCTTTACTG ATCGTAGAAAGAGCAATTTGAAAAAGAATGTGTTTCGTCTTCCACCGTGT TTGACATGCAGTATTTACAAGTTCTTTCGCACTCAAGAAAGTTCTTGTAC CGCCCTTTCTCTGTTTCAAGGGGATTGGCACTAATTCTATTTTGCTTATT GCTGGGCGTAAACGAAAATCATGTAGTTCTAGATATTTTTCCATGAAATG TGATGTTTCCAATGCCTTATAAAACCTTAGCTTTCTTATATCCATACTCA GGTTATGACAGTTTGGATATATATATCGGTAATGATATAATGACATGTAG GTGTCCAGTCAAACCTTTACTAGTGAGCATATTTGCATAAAGTCCACGTT TTTATGGTCTCGTATATTATTTTCCCTTTGATTAAAGTATTGGTCTCACC ATGCCTAATATATTCCAAAGTCAAGTTCTTATTT

Coding sequence (CDS) from alignment at Sc0000026:1163885..1170968+

>Blg00087.1 ID=Blg00087.1|Name=Blg00087.1|organism=Branchiostoma lanceolatum|type=CDS|length=750bp|location=Sequence derived from alignment at Sc0000026:1163885..1170968+ (Branchiostoma lanceolatum)
ATGGCGTTTTTGCTGAGAAAAGGACGACAATGTTGGTTTGGTGTCCGAGG
CCTGGCGACTTCCCATAGACCAGGGGTTACAACGGTAACCGACCTTCCCG
ACAAGAACACGGAGCGACTGGAAGAGAAGACAAAAATCGAAAAAGCAACT
TCAGTCGACAGAGGTCAGTTTAACGTGCGAGTGGTCACCAAACACATCGA
AGTACAGTCCACGGGCGACCGCACTCCTCTAACTGACGACAGACCGCTCG
TCCTGCTCTTCTCCTGGCTGTACGCTAGCAGGAAAGTGCTGGACAAACAC
CGCGTCTTGTACCACCGGCGGGGGTACGACGTCCTGACGGTGAGAGGGGA
CCCTCGCTACGCCTTCTCACCGACTGGGTTCGCGAAGAACATTGCCGTAG
ACGCCCTGAAGTTCCTGAAGGCTGAAGCCAATCCGAAACAGCCGTTGCTT
TTGCACACGGTGTCTGTAGGGTGGGCTCCGTACGTCATGCTGCTGAAAAA
CGCACGAGATGATGCAGAATATGGCGACGTTCTGGGCAGGGTTGTCGGGC
AGGTGTTGGACGCTCCGATCGGAGACACGAGGGGATGTGCAGTCGGAGTC
GGGAAGTCCATCAACAATCCCGTCGGTAGGCTGCTGTACACCGCCGGGAT
CTGGAGCTTCTTCACGTTCGTACCGGGAGTGCTGAAATCACACGATTTTG
TAGGCAACATTTCATTTCACTATTTGTTTATTTGTTTTTGTTTTTGTTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00087.1-exon-Sc0000026-1570713199:1163885..1164601Blg00087.1-exon-Sc0000026-1570713199:1163885..1164601Branchiostoma lanceolatumexon
Blg00087.1-exon-Sc0000026-1570713199:1166964..1169535Blg00087.1-exon-Sc0000026-1570713199:1166964..1169535Branchiostoma lanceolatumexon
Blg00087.1-exon-Sc0000026-1570713199:1169684..1170968Blg00087.1-exon-Sc0000026-1570713199:1169684..1170968Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00087.1Blg00087.1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:1163885..1170968 +
Properties
Property NameValue
GeneIDBlg00087