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Blg00085.0 (mRNA) - B. lanceolatum

Overview
NameBlg00085.0
Unique NameBlg00085.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:1270851..1278351+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00085.0 ID=Blg00085.0|Name=Blg00085.0|organism=Branchiostoma lanceolatum|type=mRNA|length=7501bp|location=Sequence derived from alignment at Sc0000026:1270851..1278351+ (Branchiostoma lanceolatum)
ACAGAGGTAAACAGGGCTATGGAATTGGTCCATACGGTCAACAACGTTTA AAAACGTTTTGCGATCTTAATACACATCCCTAGTGACGTCACAAACGAAA ATGTTTATTCTTGCGTCATTCACAAACAAACAATCGGCTTGTGCGCACAG CTTAGAACGCATCGGAAAACCACAACACACTTCTCGTCAACTTACGTCAC AATAGTTTTCATTGTTCGGACTGTACCAAATCTCAAACGTCAACCGTCAG TGCAGTATGAACTACTTGCAGTCGTCCCGAACATTAAAAGGCCGCTGTAT TTGACATTCTTACGGTATTGGTGAGGTAATTTTGAAAAATAACGACGTTT AAAGATGGTTGGAATGGACATGGACCCGTTTGAAGAGCCGATGGACTGGT CATACCTCCCCGCCGAAATCGTGGTGCAGGTGCTGTCGTATTTAAATGAG CAGGATCGGGCGAGCGCCGCGGTCACGTGTTCCCGCTGGCACGGGCTACA CTCCCACCCCTCTCTGTGGAGACACCGTACTTTTAACCCTGGAAACACCG CAGAATTTCACAGGTACTTTTTATTATTCCTTGGTGTTTTTTTGTTGAGT TTCTTCTTTTTGACCGAACAAATATGTAAGGTCAATGACCCGGGTCAGTC GGCTGTCACCATGGTTACTGGAGGTGTAACGGACACCCTGTGGTGTTTGA ATACATAATGTAGCAAGTGGCAGAGCAGTTGCAGGGTACCATTTAAAGAT GTATAACATGAATGTTTTAGAGTAAGAATACGTAGAGCAGTAGTTTGTTA GGCAAGACAATGTAAAGGTTAACATTATGTATTTGCTTGCGGACGGAAAA AAGTATAAAAGGGTACCAGATTTGCTTCCTTTTGGATTTGTGTCAATGTT TTATGTTTGGTTCGTTCGAATTCGTTTTTACCATTTAGGACCTGTGATAT GCTGAGGCAGTATCCGTTGGGGTTAGCGTTTTATCTGAAAACGTTCGAGG CAGAGTACCCGGAAACCGCTAGGGGCGCTCATAGGATGCACCATTGCAAG AGAATACAGGTTCGTGAGGGTTGTTGATGTGAGTGTGCATGTGTGTTTTA GAGTCATAATAAGTACAATCGCGTTCTAGAACAATGCATGACGACTAGGC TTTATGAATTATTATGACGGAATTAAGAGCACACAACAAATAAATACAGA ACAACAACAGCAACAAAGACTTCCAATACGAACGGTCGCGACCGCGATGC CTTGTGTGTATTCATATGTGCATGTGCAGGTGGTCGTGTATGTGTGGATC TAGCTGTGTTTTTGCGAGTGTGTAAGTATGTACTCGTGCAAGTGTGTGTG CCTGTTTTTTTTTTTTGGTTGTGCATTGCCAGATGGCACCTACTACCAAG AGGGTGAAACTACCTCCAATCGCATTGTTCGATTAAACGTACTAGTGTCT AAATGTATTAAATAAGGACAACAACAACAACACGTATTTGCCTGGGTAGA TACTAGTATTATATTGGATTTGTGCAGAATTTGTCATATCATCTACGGAT CTTGTTTATAAGATGAGTTTCTTATTGTTTCTCGTAGAAAACCATGACAA CGTTCCTGTCACGGCTCAGGGGCAAAGCACAACTGCGCACGCTCAAACTA CGTCATTTCGAGCTGCACCGGCGGACATGGCAAAACAGGTGACTGACGGT GATACGTTTTATTTGGAAACCAAATTTGTCAAGGTTTATACCTTGTCTTG ACGAATCTTTACGTCAGTGCAAAGTGAACTAACGTTTCTAGACAGTGTTT ACTAATAGTTAGTAGTTGAAAATGGGGACGGCAATACAAGTTCTCATGAC TTTGACTAGAATTATGCCTATTTTTGTTAAAAATAATAAACATGTGTGAT GCTACATATAGTTATCGATCATTTCTTTTACTACTTCAAGAACCACGGAA TCTGAGATGATGGAAACGCTTATTTTCCAATAACAACATTAGCCTACGTA TTAGTATAATTACTTCACCACAAAGAGAGTATAGTTTTTACTTTCTCTCC CCCTCTCTCTTTGCACTGCAGTTTCTGCATATTTTCCCAGAGGGCGCTTA CGCTTAACCTGATTTGAATCCTGCAGGAGTGCAGACCTGGTGCGGTCCAT CGCGTGGTTCCTGCGCAGTCAGGCTCGGCTCCGCTGGGTGGAGCTGCAGG GCATGAACGCCACCCCGGAGCACGGACTGCGCATGCTCAACAGTCTGTTC AGGCGCAGTGGGGCCAACATCCGGGTTCTAAACATACAGGACTACTTCTG TTCAGGTATATAATCATCATCATCATCATCATCATCATCATAAATTAAGA TAAACTTTAGATACAAATAGACGTATTGATCAAGCAATTTCATTTTGTTT CACTAAGGTTTTATTGATTTTCATTATATGGATGACATCATCTGGGAACC CTTAAACTGACGGTAGCGTTCAAATAAAAAAAGATGGTCAAAAGGAGTTG CCTTCATTATGTAATCCAAGTGGTCAGGAAGGTTGAACAAAGGACTGAAT GACAGAACACCATGGTATCCCAAGCAATAAATACATTTTTGACAAGGAGT AAATTTACGTCAAAGGTACGTTTTAAGATATGAAAAGATGCATTCTACGA CATTATCATCCGTCTCCAATATTTTGTTTGAAAGTTACCGTAACGGCTCA TTTTGTAGCTTCTTTGTATCACTCACTATATATCAGCTAACGTTTTTAAT TTTTTTCAAACGGACGGAAATTGATGCGCTTACTAATGTTATTCATATAA TCAAGGCAGTATGTCTGTGTTCTGTATACACATATGTAGGCACCGCACAT ATATGGATAAGAGATAGGCATCAGGACAAGAAAAAATCATCCCTTTAAAT ATCAGACTTATCAGCCTAGGATTGATGTGCTCAAAATTTCGTAATTACCT AGAACGATCGTAGAGTGGAACTAGTTGCCACTAAATTTCGTAGAAGCATC CTCATCAGACAGCTTTAAACAATGCATGCAGTTAGATATGCGAAGGTTAT AACATGACTGGTCGTTCGGCCGCGTGCCTACAAAACTGGTATGATATGCC GAAGGACGGTTATACCGGCTAATAATAGTATATAGATACAGATACATATA CAGAAGAGTAGGGGTCCTTCCTGGTGTGAGTGGATCAAATTCGCATGTTC CCTGTTCTACATTTTGTAAAACAATGTTCACCTCAATGTGCTTTACAGGT TATGCCATATCCATGCAAACAAATGCAAACAAATAGCGGTCAGCATCATA TTAAGTACAATCGCATTCTAGAACAATGACGACTAGTTCTTGTGATTTTA TTTTGAAGCAATAAAAGCACACAAAAACGTTATCTACAGTATAAAACCAA CATTTTGTAACACGTACCCCTTCCCCCAATTCTGTAGCCCAAGCCATCTA CGCACTACCCGAGTTCCATCAGCTCTTCAAGCGGTTGCGCCACCTGTCGG TTCTGTACCTGAACTACAACTGCGTGTCTGACGAGCTGCTGACGACTTTG GCTGAGACTTGCGGAGGAAGTCTCACGGATCTGAACATCAAGTACGTAGT AGTTAAGTCATACATAGCCTGAGGCGTCGCCAAAAACAAACAATGGCAAA ACGTACGTAGACGTATGTCAACTCAAGTCCGGTCAAGTCAAAGCCTTTAT TTAGGCCATCGAGAATGTATTAAGATTTGTCTTGACTTGACACGCATCTA CAGTTTGCTCGTGTGTTTTTGGCAACGAGGCAAGGGCGGAGCATATCTTT ACTTGAAGACAAACACTTTTTAGTTTAGATAACTTTATTGAGAATGTATG GTACATACCTTCGTTGCACTGACACAGTTACGTTATTATTGTGGTCAAAG CACCGTGTTCCTGTAAATAAATAAAGATTAAAAAAACACACAAAGAAACA GACAACACAACAAGTAAATAAAGAAATAGATAAACATACGGAAACGACTA TCAAGGAATTTACTGATAAAAGTGTAATCGTCACCATTGCATTATGATAT GTGAGAATGATATAAAGAAGAGAACCTTTAATTATCTTTTATCAAAATGC TCAATACATGGAGACATTTTTATTCTAGTCATCAGGTTCACAGACATTCT ACACGTAATACAAGTAGGGGAATTTTCACTGATATTTACTTTACAAACGC ATGGTGGTATTAGGGGCTGAACCCACTATTGTAGTATTATTTATGCTTTT ATCGCTGTGTGGCCCAAGAGCAAGGGGAACGTAGATAGTCGCCGTCTTAA ACACCATATGGTGTCAGGAGGGCTTAAACTATAACTAAATCTAATTCATG ATACCTGCAGTTTTACTTTACGTTGAATGGTCGTTCTCTGTGCCGTTCAT CAACAGGGTGTTCCACATGGATCCACACTTCCAACGCATCTGGAGTATGT CGTGGTACTCCCTGCGCTGCGCATGCGCAAATCTGAAGGTCACGTTCACC TTCGAGCGCGTGCTGCTCCACCAAGACGTGAAACAGTGCCTCCTTCCCGA CATGCCGCTCACAAACCTGGAGGTGAGACTGTTAACAGATTTCTTGGAAG GATGGTATGTAAAATAGGCTCCGCCCCTGAGGCGTCAACAAAAAAGATCT AGATATTCGTTGTAGTCCTATCTTTAGGATCCGCCCCAGAGGCGTGGACA AAAAAGTGATAAGCATATCATTTGGAGTCCGATCTTTTAGAATCCATTCC TGATGAGTTGACAAAAAAGATCCATAGATATTGATTGTAGTCTGACCTTG TAGATGCTACAGCCGAAGAATAGCTAGCATATTTTGCGACGCCTCAGGCG CGGGGCGAGGTCGGACAGTACCTTATTTAGGTAACAAAACGTTAAAACAA CAGCACATTCGTTATCTATCTCCCAACACAGCTGACGTGCACCAACGATT ACGTGGTGCACAGAGACTGGGTGTTGTCGCCGACGGTCCGCTATGTGGAG CAGTACTTCAGACAGACGCTACAGGAGCTCAGCATCGATCTGCTGAACGC GGACGATGACCTGTGTGAACCCCTACTCCAGGTAACGTCCCTACTTTGTA TGCTAAAGCGGGTATCTCACTAGACCCCGCGCCTGCTTGCGAATGACATT CTCTTACTGGCGCAAACAACCGCGAATTGACGCCATTTTGTCGCCAATCG GCGCCAATCTGTCGCCTGAATTGGCGATTTAAAAAAAAATTCTAAGTAAT CGCAACTGGCAAATGGGCGCGAATGAGCACCAAAGGCGAAAGCTATAGGG CGTATTCACGTGACGTCATCACCCCTGCCCTCCGTGGGCGGCCATGTTGG TGCTCACCCGGCAGCGAAGTTTTTTCGGTGTCCGACGGTCTCTAAAATTC CAAGGAATGCAAAGTCGTCTGATCGCTGTTTTATTATATGCAAAGAGTCT CCAGCCTCACATCCTTTTCGCTACAAAAATCCAATTTCACCAACTGGAAA TGACCCATTATTGACGAGCGAGGAAATGTTTTCCCCAGCTGCCTACAAAC ATGGCCGCTAAACTGTTTACAGAGTACGCATAAAATCAGTTCACAGCATA CAAGTGTTACAAGGCCTGCAACCACGTATTACAGTGTCTTGAGTGTCGTG AAAAATTTTGTTGACAGGGAGTACGTTATGATCGGGAAAGTTCGACGTTG AAAGACCCGCCAGTTTACGAACGTATCTCAACAAGGAGGTTTCAGATCTC AAGCAACGACTACACGGTGCCGCGACTGTGTTACACAACGGGCCTGTAAT TTGCTTTTCGACCAGATACAAAGGTTTCCATACACTCACGTTGATTCTCA AACTTCAACTATTTAGATCCGCTGTTCGTATGTCAGAAATTCACTTTTGT TTCAGTCGTTAGTCCCTTCGTATGTTCCCTTACCTACACGAGAAACGCCA AACCAATCTTACTGTTACCCGATCAGTGTGTGCTTTATCAGTCCCAATCA AACATCTGACCACGAGGCAAAACACCATGATTGTGAGACAAAACGTTCCG AAGGGAAATTGTGAATGGCGTAGAAAACATCTGCTATTTATACGGAGAGT TCCATAGGGCTCCACTATCAAGTGAACACCAACATGGCCGCCAGTGCTCG TTGCTAGAGGGAGGGTCACGTGACTGAATACGCCCTATTCTGTAATAAGT AATATGTCAGTTTATTAAGTACTATAAACGATGTCTTTCTAATAACTTAT GGACGTAATATGGAGCGTTGCACATTCATTCTGAATGTGTAAAATCATCG TACAGCCAGAAAGCGTCATATAATCTATCTAACAAGCACGTGCATACAAC AACGTAATAGGCGAGGGTACACATTCATTTTGCTTTGTAACATTGTAATG TAGTACTGATCATAAGCTGTTAACGTTGTTGTACATGTAAAGGAAAACCC AACTTGATGACAACGGCTTTCAGACTAAAATCTGCATATTTCCGCATCCC CACAGCTGATCCAGTCGTGTAAGAAACTGTGGTCGTTAGAAATCAGGACA TGGATGAGAACGGCGTTCGTGGACTCCGTCTGTCAACTTAAAAAGGAAGG TAGGAACAACATCTCTCTTTCTCTCTCTCTCTCTCCCTCTCTCTCTGAGT CTCTCTCTCTCTCTATATCTCTGTCATGTGTCAACCTAACGGTCAAGTTC ATTGACTGTATTTTTACATTGCTTACGGGTACACCACAGTGGATAAGAAT ATTCTTTATTCACAATCAGGATCTATATACAATGAACAGCCGACGTTTCG GTGACCGTTTGTCACCTTCCTCGGGGCAATATGACAAAACCTTACGTTTG GGACCGAATATATGACGATGCTTCACGTTTGAGGCCACATTGTTAGCAGC GACGCCTATCTCCAGTGTGGAAAATTGCAGGCCAGTATTGCCCTGAGGAA GTTGACAGACGGTCACCGAAACATCGGCTGTTGTTTGTGAATGCACTTGT TATCCAGTGAATTTCCAACCTAAAGAAATTATTCACAGAGGAGTGCACCA CACAATCAGTGTAGTATTGTCCATGGCATGCAGATTTTTCGCTCAGAAGA ACCCCTTGAATGTAACGTTAACATGCGTGGTAGACATTCGTAAATATTCC GCCATTTTTTTCCTCAGGTAAAACTATCCTGACGACCTTCAAAGCGGTGC TGGTGACTCACATGGACGAGGAGACCCGCCAGGAACTAGAGGTGGTGCGC AACAAACACAAGGACATGATACGGGAGGGTCTACTGAACTACAACTTCCA TGTAGAGTGGAACCCGTACTTGTAAACTGCGTATCGCAGGTGGACCGCTA GACGGCGCTCATGATACATGACATTGCAGAAGTTGCGTCAACATACATAT ACCAATACGCTGGAAACCAACTTATTTATTTGATTACTCAACGTCTGAAA CTAACTTAATGCAAGAACGTGATACGGGAGGACTGTTAGACCGTATAATG G

Coding sequence (CDS) from alignment at Sc0000026:1270851..1278351+

>Blg00085.0 ID=Blg00085.0|Name=Blg00085.0|organism=Branchiostoma lanceolatum|type=CDS|length=1332bp|location=Sequence derived from alignment at Sc0000026:1270851..1278351+ (Branchiostoma lanceolatum)
ATGGTTGGAATGGACATGGACCCGTTTGAAGAGCCGATGGACTGGTCATA
CCTCCCCGCCGAAATCGTGGTGCAGGTGCTGTCGTATTTAAATGAGCAGG
ATCGGGCGAGCGCCGCGGTCACGTGTTCCCGCTGGCACGGGCTACACTCC
CACCCCTCTCTGTGGAGACACCGTACTTTTAACCCTGGAAACACCGCAGA
ATTTCACAGGACCTGTGATATGCTGAGGCAGTATCCGTTGGGGTTAGCGT
TTTATCTGAAAACGTTCGAGGCAGAGTACCCGGAAACCGCTAGGGGCGCT
CATAGGATGCACCATTGCAAGAGAATACAGAAAACCATGACAACGTTCCT
GTCACGGCTCAGGGGCAAAGCACAACTGCGCACGCTCAAACTACGTCATT
TCGAGCTGCACCGGCGGACATGGCAAAACAGGAGTGCAGACCTGGTGCGG
TCCATCGCGTGGTTCCTGCGCAGTCAGGCTCGGCTCCGCTGGGTGGAGCT
GCAGGGCATGAACGCCACCCCGGAGCACGGACTGCGCATGCTCAACAGTC
TGTTCAGGCGCAGTGGGGCCAACATCCGGGTTCTAAACATACAGGACTAC
TTCTGTTCAGCCCAAGCCATCTACGCACTACCCGAGTTCCATCAGCTCTT
CAAGCGGTTGCGCCACCTGTCGGTTCTGTACCTGAACTACAACTGCGTGT
CTGACGAGCTGCTGACGACTTTGGCTGAGACTTGCGGAGGAAGTCTCACG
GATCTGAACATCAAGGTGTTCCACATGGATCCACACTTCCAACGCATCTG
GAGTATGTCGTGGTACTCCCTGCGCTGCGCATGCGCAAATCTGAAGGTCA
CGTTCACCTTCGAGCGCGTGCTGCTCCACCAAGACGTGAAACAGTGCCTC
CTTCCCGACATGCCGCTCACAAACCTGGAGCTGACGTGCACCAACGATTA
CGTGGTGCACAGAGACTGGGTGTTGTCGCCGACGGTCCGCTATGTGGAGC
AGTACTTCAGACAGACGCTACAGGAGCTCAGCATCGATCTGCTGAACGCG
GACGATGACCTGTGTGAACCCCTACTCCAGCTGATCCAGTCGTGTAAGAA
ACTGTGGTCGTTAGAAATCAGGACATGGATGAGAACGGCGTTCGTGGACT
CCGTCTGTCAACTTAAAAAGGAAGGTAAAACTATCCTGACGACCTTCAAA
GCGGTGCTGGTGACTCACATGGACGAGGAGACCCGCCAGGAACTAGAGGT
GGTGCGCAACAAACACAAGGACATGATACGGGAGGGTCTACTGAACTACA
ACTTCCATGTAGAGTGGAACCCGTACTTGTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00085.0-exon-Sc0000026-1570713199:1270851..1271413Blg00085.0-exon-Sc0000026-1570713199:1270851..1271413Branchiostoma lanceolatumexon
Blg00085.0-exon-Sc0000026-1570713199:1271789..1271909Blg00085.0-exon-Sc0000026-1570713199:1271789..1271909Branchiostoma lanceolatumexon
Blg00085.0-exon-Sc0000026-1570713199:1272438..1272538Blg00085.0-exon-Sc0000026-1570713199:1272438..1272538Branchiostoma lanceolatumexon
Blg00085.0-exon-Sc0000026-1570713199:1272977..1273155Blg00085.0-exon-Sc0000026-1570713199:1272977..1273155Branchiostoma lanceolatumexon
Blg00085.0-exon-Sc0000026-1570713199:1274288..1274441Blg00085.0-exon-Sc0000026-1570713199:1274288..1274441Branchiostoma lanceolatumexon
Blg00085.0-exon-Sc0000026-1570713199:1275257..1275422Blg00085.0-exon-Sc0000026-1570713199:1275257..1275422Branchiostoma lanceolatumexon
Blg00085.0-exon-Sc0000026-1570713199:1275782..1275931Blg00085.0-exon-Sc0000026-1570713199:1275782..1275931Branchiostoma lanceolatumexon
Blg00085.0-exon-Sc0000026-1570713199:1277356..1277449Blg00085.0-exon-Sc0000026-1570713199:1277356..1277449Branchiostoma lanceolatumexon
Blg00085.0-exon-Sc0000026-1570713199:1278018..1278351Blg00085.0-exon-Sc0000026-1570713199:1278018..1278351Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00085.0Blg00085.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:1270851..1278351 +
Properties
Property NameValue
GeneIDBlg00085