Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

Blg00081.0 (mRNA) - B. lanceolatum

Overview
NameBlg00081.0
Unique NameBlg00081.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:149129..152795+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00081.0 ID=Blg00081.0|Name=Blg00081.0|organism=Branchiostoma lanceolatum|type=mRNA|length=3667bp|location=Sequence derived from alignment at Sc0000026:149129..152795+ (Branchiostoma lanceolatum)
TTCGCATAAAATTTCAAAGCAAATGGCGGAAAAGAAGAAGGAGGAGGATC TTGTTTTTCTCCGCGGTTTGTGGCGCGATTTCAGCCCGTCCGAATGCTGA ACGAGATCGTTTTGGTCGGCGGTCTGATTTTTGTCTTTACGTTGCTGTAC TTATCCTTTCTTTTGCCTTCCAAGATGATCGGAAACGACGAAGACGACAA AGAGAACTCCACCACCAAAACAGTGGGGAGGGGCGGAGGAGGGACCGGGG ACGGTGTTCTTCGGGAACTGGCCCTCACGAATGGACAGATCAATCGAATG AATAAGGAAGAAGTGCGGCAGAAGCTAGAGGAGCTACACCTGGAAACAAG AGGCGTGAAAGAAGTCTTAAAGAAACGGCTGAAGTCCTACTACAAGAAGG AGAAGCTATATCCAGACGTCAAATCCCCCACTCCCGAGCGATACGACTTC CTCCTTGTGATAGACTTCGAGGCGACGTGCATGGAGGAGAACCCTCCGGA CTTCCAGCACGAGATCATCGAGTTCCCCATCCTCCTGGTCAACACGGAGA CTCTCATAGTGGAGGACCAGTTCCACTCCTACTGCAGACCCACCATAAAC CCCATACTCACCCCCTTCTGTACAAAACTGACGGGAATCACGCAGAAAAT GGTGGACAGAGCTCCAGAGTTTCCACAGGTATTAAACTTGGATACTTTCT TCACTCCATTGTAATTAGCTATCATACATGATATGCAATCAGTAGGCAGC TTGTCTTCCTGCAGTACAAGCAAACGACAACATACAAATAAGCAATAACA TACGTATACTACCAAAACTAGTTAAAGTTAGAATCTCCTGCCTAAACTTG ATCTTTGTTGATGTTTGTATCTGATATGGCAAACTGTTCCATATACATAT ATAATACAACACGGGGTATTCCGTATCACCCGAGGTACCAGCCTGACGGC CAGAGGGCGATCCGACCCGCGGGAGGGCTGGGACCAAGGGTGATGCGGAA TACACCGTGTTGTATCTTATTTATGTCATACCCACCTGAGAAAGCACACA TTTTAATGCGGAATGTGCCAAATGTTGAGGGAGTTTTGTGTCCTCAAACA CAAGACTGTAACAACATTGATTCCAACCTCCGAATCCGGTATTCAAATTT TTTGCGCCGGCACAACCGGCGCGCTCGAAATGCATTCGAAATATTCTATG GAAGCCCGTGTGATACAACTCCCGAACCCTATGTGATCTGGATAGTTATC ACATGGTCCGGAACACCTGTATCAGGCCCAGGCATGACATAAATGTAGAT ATGGACCTATAACACCGTATATGAAAGTCTTTTTCATGGCGTTTGTTCTT GGTTTCATCAGTCTGTGTGTGTTTCCTCTGTCTTGTACAGGTTCTGGAGG ACGTGCTGGACTGGATGTCCAGTAAGGGTTACGGGATGGGGCACTCCAGA TACGCCGTGGCCACCGACGGTCCGTGGGACATGTGCAGGTTCCTGTACCA GCAGTGCCTGCACTGCGGCATCCCGTACCCGCGGCCCTTCCGCAAGTGGA TCAACGTGAAGAAGCACTTCGCCAACTTCTACCAGACCAAGGGCGGCACC AAGCTGCAGGAGATGCTGGCCAGCCTGGGACTGCAGTTTGAGGGGAAGCC GCACAGCGGGCGCGACGACGCCGTGAACATCGCCCGCATCGCCGGCCGGC TGATCCAAGACGGCTGCGAGCTGCGCGTCAACGAGTGTCTGAACAATGGC AGGGTGGAACCCGTGGTTCCCCCACGCGCCAAACTGTCTGTTAGTAACTA GGAGGCTCTCATACGGCCAAACAACTGTTTTGATTTCATGGATGATGATA TTTGATGATAATGATAATAAACTGTTCTTGCTTGCAAATTTTATGGATGA TGATATTTGATGATAAAGATAATATACTGTTCTTGCTTGCAAATTTATTT ATTTATTTATCAATCTTTAGGGTGGTCCCTTCAGCTAACATTGTAGCTGA TTTCCAAGGGAGCCCTTACAAATGGCGAAGACTGAACCCCCCTCTGCAAG CCAGATCAGTGTACAAAATGTACGTTAGTTGTAAATAATTTGTCTGCACT TCGTTGTTCATTGACTGATAGGTGAGAGAAGCCAGGTAGTGCTGGGTACC TAAATGTAACATCAAGTACAGGTACAGGTACCGGTACAGAGGTTTAGGTA CAGGTCCGGACCTGTACCTGAACATTCTGAAAAATTAACATGTGTTCCTC TGAACTTCTTCAATGACAAAAACATAAACTGTTTTCAACTTGCCAGTACA TGTATCTTTATTCAAAGAACATAACTAGGTTTCCTACCACCAAACTCCCT TGGCCTTGCTATCAAAACTACCTGAAATCCTGAATGATCTGTTGCATATT AGTTACGCTGTTCCAAGGTATCACTTTGGTCACGTTTGGTGTTGCATGAG GTCAGGAGATAGTCACAAGGTAAGCACATACTTGGTGTAAATTTATATTG GTACAGTACCGGTACTTCATGATTTTCGACCTGTTACGAATCAATTTTTA CGGTACAGTACTGGTACACAATACCGGTATGCAGCACGAAAGCCAGGTAT TGATTCTGTCTTGTTTTCCTCTCGGAAAACAGGAAATCTTGCTTTTTAAT AATGATCTGCTTTTTAATAATGATCAAGACAACTACAATGTATATGGAAG GGACAAAGTGGTTAAGAAGTATCTGCACGCAAGATAGAAATCTAAAGTGA ACAAAAAATGTAACCCATGAAACCTTGATTTTTTTTCTGCCTTACTCCAA ATTCAAGAATAAAAATCCGTCAGTTGCAACAAACACTGTTCACTTGGAAT TTGGATCAATTCTTGTTACAGTTGTTATCTCTTCATAGTGGCGCGTACCT AANTTATCTCTTCATAGTGGTGCGTACCTAAACCTGAGTTTAGGTTTAGG TTCAGACTTGAGTCCAGAGGTTAAGGTTCAGGTTCGGACTTGAAAGTCCG GACTTGAACCAATGGAATATGTGTTCCACTGCTACGAATATTTTTTTCAT GTTTCAAGTAAAATTGCATATCGGCATATATTTTACATGCATTTTGAAAA CTATAATATGAGGAATTATATACAGTCAGTAATTAATGCAGAAGTTCAGT TATAAACGCAAAACAGCAATGTTTTCATATTTTTCCAGTGCAAATTTCAT GATCTAAGGAAGCTTTACCGGTTTAAATCAAGAAGGAGTGTAAAAGGGAG AGATTTTTTTTTCAAGTCCGGACTTGATTCCAGATGTTTAGGTGTTTTCT TGGACTTGAACCTAAAGGTCAGGAACAGGTCCGAGGTTTAGGTACGCACC ACTATCTCTTTATCTTCAGGAATTTGGTAACCATTTTGCAGTCTTCCATC AAATCTCTGGAGGATGCCTGTCTATGAAATCAAATTTGTATGGCCTACTC TGGTGTTATTTGTCAAACTCATGGAAACATCTCTACCATTAGAATGCCCA AAACAAGTATTGAATTGGCTTAGGTGTATCCTTGGCAAACAGCCTTAAAG GTACCCTAAGCGATTTCTGGGGATAAAACTTGAAATATTCTTGGGAAAGC AATTCTGTCTGGTGAAATTGAAATTGACATTTACTTCCCCATATTAGCAC ATTTGCATCATTATTTC

Coding sequence (CDS) from alignment at Sc0000026:149129..152795+

>Blg00081.0 ID=Blg00081.0|Name=Blg00081.0|organism=Branchiostoma lanceolatum|type=CDS|length=996bp|location=Sequence derived from alignment at Sc0000026:149129..152795+ (Branchiostoma lanceolatum)
ATGCTGAACGAGATCGTTTTGGTCGGCGGTCTGATTTTTGTCTTTACGTT
GCTGTACTTATCCTTTCTTTTGCCTTCCAAGATGATCGGAAACGACGAAG
ACGACAAAGAGAACTCCACCACCAAAACAGTGGGGAGGGGCGGAGGAGGG
ACCGGGGACGGTGTTCTTCGGGAACTGGCCCTCACGAATGGACAGATCAA
TCGAATGAATAAGGAAGAAGTGCGGCAGAAGCTAGAGGAGCTACACCTGG
AAACAAGAGGCGTGAAAGAAGTCTTAAAGAAACGGCTGAAGTCCTACTAC
AAGAAGGAGAAGCTATATCCAGACGTCAAATCCCCCACTCCCGAGCGATA
CGACTTCCTCCTTGTGATAGACTTCGAGGCGACGTGCATGGAGGAGAACC
CTCCGGACTTCCAGCACGAGATCATCGAGTTCCCCATCCTCCTGGTCAAC
ACGGAGACTCTCATAGTGGAGGACCAGTTCCACTCCTACTGCAGACCCAC
CATAAACCCCATACTCACCCCCTTCTGTACAAAACTGACGGGAATCACGC
AGAAAATGGTGGACAGAGCTCCAGAGTTTCCACAGGTTCTGGAGGACGTG
CTGGACTGGATGTCCAGTAAGGGTTACGGGATGGGGCACTCCAGATACGC
CGTGGCCACCGACGGTCCGTGGGACATGTGCAGGTTCCTGTACCAGCAGT
GCCTGCACTGCGGCATCCCGTACCCGCGGCCCTTCCGCAAGTGGATCAAC
GTGAAGAAGCACTTCGCCAACTTCTACCAGACCAAGGGCGGCACCAAGCT
GCAGGAGATGCTGGCCAGCCTGGGACTGCAGTTTGAGGGGAAGCCGCACA
GCGGGCGCGACGACGCCGTGAACATCGCCCGCATCGCCGGCCGGCTGATC
CAAGACGGCTGCGAGCTGCGCGTCAACGAGTGTCTGAACAATGGCAGGGT
GGAACCCGTGGTTCCCCCACGCGCCAAACTGTCTGTTAGTAACTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00081.0-exon-Sc0000026-1570713199:149129..149806Blg00081.0-exon-Sc0000026-1570713199:149129..149806Branchiostoma lanceolatumexon
Blg00081.0-exon-Sc0000026-1570713199:150519..151263Blg00081.0-exon-Sc0000026-1570713199:150519..151263Branchiostoma lanceolatumexon
Blg00081.0-exon-Sc0000026-1570713199:151725..152795Blg00081.0-exon-Sc0000026-1570713199:151725..152795Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00081.0Blg00081.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:149129..152795 +
Properties
Property NameValue
GeneIDBlg00081