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Blg00079.0 (mRNA) - B. lanceolatum

Overview
NameBlg00079.0
Unique NameBlg00079.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:2484557..2489458+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00079.0 ID=Blg00079.0|Name=Blg00079.0|organism=Branchiostoma lanceolatum|type=mRNA|length=4902bp|location=Sequence derived from alignment at Sc0000026:2484557..2489458+ (Branchiostoma lanceolatum)
ATGCGTGCGAAGTGCCCAATCCTGTCACGGGTAAAGCAACGCTTCCCCCC GGCTCCCCATGTCCCGCAGAAGAATTTACTTTGGTTAAAAAGCTTAACAA GTATAACTTGACATTAAGATAAAGACAAATAACTGAGCTTACAGTTTCTT GCTCGGGCAGACACGGGCATAATTGCCTACTCCATTGCAGTTGTAGCATT GCGTCACACTAAAAAGTAAGGGGGAAAATATCTTTATCGTATCTTATTAC CTGGATGTATAACCTTTATCAACGTAACAGTTTTAGATAGTCCATTAGGA AAAGAATTAGACAAAGTCAAGACGAGCTTTATGCTAATGAGTCTCCTGTT GTTTGAGTACAGTGTACCCAAGTGCTAGGCAGATCGACAGTTCAATGTAT TTATGCTTAAACCTTATAATTCTGCTCAATATTGTTCTTGAAACTAGCCT TCACTCTCTTCACTACTCAACCAAATTATCATCAACATAAAGGCGGACTT GAAATGAAAAGATGTGAGCCACTCACATATCCTGCACTCTGTGTTTTCTT AGGAGTGTGCGATGGAATGTCCGAGAGACTCAGGTGACCCCTGCATCCCG AGTGGGTGGATCTGTGATGAACTAGACGACTGTCTGGATGGGAGGGACGA ACGAGGGTGTATGCAAGGTAGGTGCATGTTGGACTAACCTATTGGACTAT GTTGGACTATTAGCTAGGGAGGCGTCCAGGCGTCGTAAGAACTCTCTGTA CAAAAAAATAGACGCCATCTTTTGCAGAAGGACGCAAAAAAGACGCCCTG TTTTCCTGGTAATTACATACACATGTGCCCCCCTCACACTCACACCACAC TGACTGTTATTGCGTTCCTCGCACGTACATCAGACACTGGAACAGCATGC AAATTGATTGACATCCAAAGCTACCAGGTAATTGTTAATCCACATGGCCC ATTGGGGGAAGTCTAGTTCCCACAAGCAAAAAAGAAGGCCAAGTTGCTGA CATGTTCATTTTTTTGTACTCAGTGGTGTTAAAGTTATTCTATATCTTGT TTGTTAATAAGTGTGATATTGGCGGCGCCTAAAACAGCAGTTTTAGTGCT GAAAATGCTCATCTGCAGATCTGGGTTAAGTAACACCCCCATCCAGGGTA CGGGTGTTATGGTTGTTGGGGGGGGGGGTGTAATAGAAAAGGTCACATGT AGCATGTTGGGGCTGGGAGTAATATCAGTAAAAGTTGTATGTGGCAGGTC ACTCGGACACCAGACTGATTTTGCCAATCTGATGTTCCAAAGAAAATAAA TTTAGAGATTGAGTCGAAGTTTATAAAGGCTACTAATTCACTCATTGCCC AAAATGAGGACATTTGGCAGTAGAATGATTATGTATAATGGTCCAACACT AAAAATGTGATAAATAATCAATTTGTAAGTCTCTCCAGCCAGTATAATTG ATGGGGCTTAACTGTGTGGTGTGCTTATCATGACAGGAGTACCCAAAAAC TGCTTTTTTACTTGCCACACCAACGTCACGTGTCTGCCGACAAGTCAGCT GGGTGACGGACATCACGACTGTTCTGACGGGGAAGACGAAAGACCCAGTG ACAGTGAGTCACAACCGTAATGCATTTATTAGTAAACTGTTTGTATGACA GGTTAAGTGTATTGTTTGTTTATTGCTTGTTTATTCATTCGCATATGTAC AAGTGTTTAAAACAAAGATATACAAGGCAAAAAAAACATGCAGTGGGGGG GGGGGGCAGAAGCCTAGGTGGCCTTACTTGGGCCTCCCCTCGAAACCTTA CAATAGGAATTGTATAATAAACTGTACATAACTCAAAACTAAGCAACATT AACGATTGAAAATGAATTGAACTTATACCATAAATCTTGATAGATAAATA GATACGAGGAAATACAAAATAGATTTTAAGGTATTAAACATATTATAAGG TACGCTAATATGATCAATACTAAAGATAATTAACAAATTTTGAAGAAGTA GATCAGAAATCAAACAAAATATTAATCACCAGATGTCAATAATCAAATAC TAAAGTATCATAATTAAGTATCGTATTGTGTTGCATTGCAATGCAAGGTA AGGTATTTCAAGACGTAATAGGTCTTTCCAAATTAAAAGTGCATTTGGAT GCCAACAGACATACTGGTTCTTATATTTCCTCTACAGATAGTCCCATTTC CCGAGGAATGACTTCGCTTAGCTACGCCAAAAATAGTTACTCAAGCAACT GGATAACATTTTGAAACAGTTTGACGTTTCAGACAGCATCCGCTGTCTTT CGTCAGTGACTATCGATAGGACTGGGAAACCAGGTTTTATACCAAAAGAA GATTAGTTCAAGACAAGGTTTTATTCTTCCCTTAGCACAGTGTGGTAACA GCTCCCTAAAGACTATTTATAATAATCTTTATTGCATATTCAATGCCCAT AGGCCTAAATGTAGATATGACCACACGGTACGTGGTTTAATGGGTGTAAG ATGACTTCCCTTATTATTAGCACAGTGTGGAACGGCTCCCTAAATATTAT TGATAATAATCGTTATTGCATATTCAATGCCAAGAGGCCTAAAATGCACA TATGACCACACGACACGTGGTTTAATGGGTGTAAAATGCCAAGCATGAAG CACTAAGATGCAACATTCTAATACACAATACAACGAATTAAAACGCTACA TACTAATGTTAATCTATACACCTAATAGTGTATTTTGGAACACATAGAAA CATAATTGCATGTCTCCGCAATATACAAGTATATAATCGTCCATGACATA TCAACAGTTGAAATGCAAACTGTTCACATATTGTACCTTTCATAAGCTTA CAAGACTACACAATGTCGCTTTTTTTTAAATCTAAAAAAGTGCAGTGCAT TAAAAGCTTTTCTTTCTAATTAAGACTCAACCCGGTCCATTGCATGATCT CTGTAGCATGGAAACATTGAAAATTCCTTAATGATATGTACGAAATTTCT TGCTTGTTATGAAAGCAATACGTGTACACAAAGTGTATCCATGAGGGAGA TTCAAATTTGCTTGAATCAGTTATTCATTAAGAAAGTTAACATTTTACTT TTGCAAACCTAAAAGCTATCTAGCAGCTGTTTGGAATCAGGCCTCAATGC AGGTGTGGTGATTAAACGTGTTGACTAGAATAGATAGTAAGAATTGCAGC AGCTAGCAAGGTCTTGCACTGTCATGTATATATACATTCAAATGAACACA AATCTGTTGCTACAGTTGAAGATGCACTGGGACGCAGGTGGGGCTCCTGC AGCTACAACTGCGCGTCCATCTACGGTAACGCGTCGTGCGTTCCTGACGC GTTCAGCTGCGACGGTGGAGCGGACTGCATGGAAGAAGAGGACGAGCAGG GCTGTGAAGGCGTCGTACCTACGACAGTTGATGATTGCCCGACGTTCTAC TGCGGCCTTCCCGGCTCTCCGGACCTTACGTACTGCGTGCAAGGTCATCT GATCTGTGACGGATACCCGGGCTGTGCCTCAGGGGAGGACGAGCAGGGGT GCGGCAACGCGGACGGCACGTCCACTCAAGACAGCACCATACTGACAACC GGCCTGACCGCAGAGCCAACAAGTGGTCAAGGATCGCTCGAAGATCAAAC AGGTACTTATAATTCTCCTTAAAGGAGTCCTAAATTCTAGAAGGGAGTGT TATTTTCCACTAGATTATGTATCAATGAATACATAACCAGCCGACTTTTA ACAGAATACCGCTTGTGGTGAAATACACAAGGTGTGTTTTGTAAAATGAT ATGTAACTCACTATCCCCGTGCAGACCCTACCCATGTATTCCCTATACGT ATGCTCACTTCCTTCATTGTGAATATTTTGGCATGAATGAGGGGGGTTAA GCACAATAATAAGGCCAGTTCTTAATAAGATATAAAGGAATACATAATAA AACATTTTTTTCTTAACCCCCCTGACATTCTTTGTGTAACCTAACTTTTG TCAGGCCTTGTCAGGTACATTGTATTCAGGCATAGGCTGAGGTTGTTTAA TTTAACTGATTAGAAAATAGAGGATCACCTTGGGAATTTAGTAGAATACT CAATGCTTTTTGATGCGCACGGACTAGTGGGTACTTTATCGTATACTGTT ATAAGTATTCATTTTTACTTCCGAAACTTATCTATTGAAAAATAACTCCC CCCTCTGGAGTTTAGGACTCATTTAAGTTGCTGTAAATGCATTCAAGTTC GTGGTAATTTTAATTAAAATTTCACTATATGGAGAAAATAGATTGTTCGC AGTGGTTTCAAGTTTATGATAGCGCTATAGCTACTATTACCTAGTGTAAA TTAATGGAAACAAAACGTTTCGCGGTGGTTTTAAGTTCGCGGTGAAGCTG TCACTGCGTACGCCCGACATTAAACCATCTCAAAAATGTTATTACAGGAG TCTAACAATTAACAAACTTTCCTCAGAAAAGAGGTTTCAAGCATGTAACT TCTCAGAAAAGAGATTTCAAGCATGTAACTCAATAACAAGCTAAAGCTAA AAGTTAACATTCATATATACACTGTATAATACATTTTATACAAATATCAA TAATGTTATGCATCACTGATTAAAACATCATTCGAAAATATCCAATCACT TACAAAGTTTTACAATTTTGCTACTTATTCAACCCCTCAAGAAGGCCTGG TGTAGTATATTTATGACTTATCAATAAAGGTTGTCGTGTTTATTAAAATG CTAAAAAAGTGCTTTTACTATTTATTTATTTTTCCTTCTTTGTTTTCTTT ACAGGGCTCTACACAGAGAGCCATGGATCCAAGGACCTGGCCATAATTTG GATAACAGCTGCTGCACTTGGCGGTCAGATTCTCTACCGCCTGGCTTTCT GA

Coding sequence (CDS) from alignment at Sc0000026:2484557..2489458+

>Blg00079.0 ID=Blg00079.0|Name=Blg00079.0|organism=Branchiostoma lanceolatum|type=CDS|length=747bp|location=Sequence derived from alignment at Sc0000026:2484557..2489458+ (Branchiostoma lanceolatum)
ATGCGTGCGAAGTGCCCAATCCTGTCACGGGAGTGTGCGATGGAATGTCC
GAGAGACTCAGGTGACCCCTGCATCCCGAGTGGGTGGATCTGTGATGAAC
TAGACGACTGTCTGGATGGGAGGGACGAACGAGGGTGTATGCAAGGAGTA
CCCAAAAACTGCTTTTTTACTTGCCACACCAACGTCACGTGTCTGCCGAC
AAGTCAGCTGGGTGACGGACATCACGACTGTTCTGACGGGGAAGACGAAA
GACCCAGTGACATTGAAGATGCACTGGGACGCAGGTGGGGCTCCTGCAGC
TACAACTGCGCGTCCATCTACGGTAACGCGTCGTGCGTTCCTGACGCGTT
CAGCTGCGACGGTGGAGCGGACTGCATGGAAGAAGAGGACGAGCAGGGCT
GTGAAGGCGTCGTACCTACGACAGTTGATGATTGCCCGACGTTCTACTGC
GGCCTTCCCGGCTCTCCGGACCTTACGTACTGCGTGCAAGGTCATCTGAT
CTGTGACGGATACCCGGGCTGTGCCTCAGGGGAGGACGAGCAGGGGTGCG
GCAACGCGGACGGCACGTCCACTCAAGACAGCACCATACTGACAACCGGC
CTGACCGCAGAGCCAACAAGTGGTCAAGGATCGCTCGAAGATCAAACAGG
GCTCTACACAGAGAGCCATGGATCCAAGGACCTGGCCATAATTTGGATAA
CAGCTGCTGCACTTGGCGGTCAGATTCTCTACCGCCTGGCTTTCTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00079.0Blg00079.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00079.0-exon-Sc0000026-1570713199:2484557..2484586Blg00079.0-exon-Sc0000026-1570713199:2484557..2484586Branchiostoma lanceolatumexon
Blg00079.0-exon-Sc0000026-1570713199:2485109..2485223Blg00079.0-exon-Sc0000026-1570713199:2485109..2485223Branchiostoma lanceolatumexon
Blg00079.0-exon-Sc0000026-1570713199:2486043..2486159Blg00079.0-exon-Sc0000026-1570713199:2486043..2486159Branchiostoma lanceolatumexon
Blg00079.0-exon-Sc0000026-1570713199:2487822..2488208Blg00079.0-exon-Sc0000026-1570713199:2487822..2488208Branchiostoma lanceolatumexon
Blg00079.0-exon-Sc0000026-1570713199:2489361..2489458Blg00079.0-exon-Sc0000026-1570713199:2489361..2489458Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:2484557..2489458 +
Properties
Property NameValue
GeneIDBlg00079