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Blg00077.0 (mRNA) - B. lanceolatum

Overview
NameBlg00077.0
Unique NameBlg00077.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000026:1638648..1642411+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00077.0 ID=Blg00077.0|Name=Blg00077.0|organism=Branchiostoma lanceolatum|type=mRNA|length=3764bp|location=Sequence derived from alignment at Sc0000026:1638648..1642411+ (Branchiostoma lanceolatum)
AAAACACTTCAGAAGGCGGAAAGACTCCCTGATGATCAACAAAGTCGACA TGAACGGCACTGATGTACGTATTTGAGTTTCAAAATATTAATTAATTCAT AATTCCCTTTCAACAACTGCGCGTCACACTCAAATTTTCTAACTTACGAT TCGGCTGCTGTTAGCTGCCTAATTTGACTTGTATTAAACGCAGCTACTCC TTACTGATAGGTGGCGTTGATGCAAGGAGAAGTCCGTCCAAAACGTGACT GAGTCTATATCCCCGACTTTGATTGTGAAAACAACAACAAAATTCACTTG AAAATGACTTACAAACAGTATCAACCCAGTCACTGAGTTAGACTTAGCTA CCTAGATATGGGCATTTCTTGATTTGCGACTTACGAATACAAGTGACTGT TGGTTGTATTTATCCATATTGTTATCGGAGTCTGTTGTTATGTTTATATC TGTTTTTGTTTCAAAGTATTAAACGGTAATTTTCTCAATTTCGAAATTCT ACAGCCATTTCAAAGGCTACAGCTGATGTTGGAGGAGATGGGGGTCGCCG CAAAAGTTCTAAGCATTCTGGAGAAGAGTTCTATCGTTACTGACAACGCA GAGATGAAAATAAACCTAGACAAGCTTGTCGAGTCGTTACAGAAGAGGAA GCGTTCCCTTAGCACTCATGTAAGTAAATTCAATAATCAAGATATATCAG ATACTCCACCCAAGCATTGATAAGATAACATCAATTGAATATATTAGTCT CAAACGTAAAAAAATCACGAAATCGATCTTGTCTATTTGCACACAAGTTC TACCGTGTTTATACAGGGCTCGAAATTCATCTTTGGGAATAGGTGCACTG GTGCACCCAACTCAAAAAATTGGGTGCACAGAAAGAATTTTGGGTGCACC AGATAAAATACAGTTGAATGTTCTTCTGAACATAATTACAAAGTTTAACG CTGCTGCCTTTCTTAAGAACTTCAATCTGTAATTCTATAGCTAACTTTAA AATTTCAAACAAATAATACATTAAATAAAGTACAGCAAAAAGTTATCATG CTGCTTTTTATACTTACATTTCAAGAATATTCTGTATACTAGTGTACAAT AGTACCTTAACCCTATAGGCTACAAAAATATATAGGTGCACCAGTGCACC CACAGTCAAAAATTAGGTGCACAGCTCCAATTTTGGGTGCACTGGGTGCA CATGCACCCACTATTTCGAGCCCTGTTATAGAATGGTTGAAAACAAGTAT AGTCATCTTTACTCTTACACAACAAGTGCGACTAACAAAAAACAGTCCTG GGGTTTCCTAAAGTGTAACTTCGGTCCGCATTGCTCAGCACACGTCACTT TCCTAAAGTATTACGTGAACACAAGGTCCGGTGTTTGAGGAGAGCCACAC CTGGAGCACGTTAAAGAACCCACTGCACCCATCGAAAAGAGTAGGGGTCC TTCCCGGTATGAGTGATTAAAAAACCTACAGTCCTATGACCGCACATGGG TTCGCCCTTAGTAATAGCCTCCGGCTAGTTGGGCAACGCTGGCATGTACA TGCTGAACCAATAAATAAAAACACAAGGTCAAAGGTTGTCGGAAGTCTAT ATCGCCCCCCCGTCCCTTGACATTGACCGGTATTTTGTTATTATGTCTGC AGCTCGATAACATTGTCGACGCCATGGAGAAGACAGCTGCTGAGTGCTTA TCCTTTGCGCCGTCCCTGAGCGAGGAAGGATTCGTTGACGTTCAAAGTCG GTACAAGAGGAAGATGAAAAAAGTCGTCAGAAAAATGAAACGAAGCGTAA GTAAACAATATATTTAGGCAATAAATGTCTTAAAATATTTGTTTAATTTT GAGATGTGCAGTTTGGAGCCTATGATGATTATTGTTCGACAGTTGTATAA CTATAAGATACAACGTATGACAACTTTTGTTTGGGGCATTGGTTTGAAAA TATGCATAACTTGGAAACTAGATGACCCCCTACCCCCAGCTCCGTTTGAA GCTACACCCCATGAGAATTATACTTGAAAATGTGACTGAGGCAATATCAC TTAACATTTTTTTTAAATCTATATCATTCTATCATCACAGGTGAGAAGGC CCTTTGAGAAGCTACGTGGGAAAGCTCGCAAGAAGTTCGGCGTCTTGCAC ATGGGGCTATTGGATGACGTCACGAAACTGACCCACGGATCACGTGGCTA TGACGTTACGTCCATTCTGGAGACGTTCAGAATGACCGCTCGTGAAGCCA GCGAGTGTTACGGAAAAGGCGTATCCTGTCCCAAGTAGTAGACATGTTCA AGTGTCCAGAAACCAAAAACAGTGAAAATTTACAATCCTGTGTACATGTC GCAAAACTACCAGCACAGTCTGCTGTAATATATTAGATGGGGAGTTCAAA AGCCATGATCGTTAAAACCGATATTCGATGGGGAGNTATACTTACATTTC AAGAATATTCTGTATACTAGTGTACAATAGTACCTTAACCCTATAGGCTA CAAAAATATATAGGTGCACCAGTGCACCCACAGTCAAAAATTAGGTGCAC AGCTCCAATTTTGGGTGCACTGGGTGCACATGCACCCACTATTTCGAGCC CTGTTATAGAATGGTTGAAAACAAGTATAGTCATCTTTACTCTTACACAA CAAGTGCGACTAACAAAAAACAGTCCTGGGGTTTCCTAAAGTGTAACTTC GGTCCGCATTGCTCAGCACACGTCACTTTCCTAAAGTATTACGTGAACAC AAGGTCCGGTGTTTGAGGAGAGCCACACCTGGAGCACGTTAAAGAACCCA CTGCACCCATCGAAAAGAGTAGGGGTCCTTCCCGGTATGAGTGATTAAAA AACCTACAGTCCTATGACCGCACATGGGTTCGCCCTTAGTAATAGCCTCC GGCTAGTTGGGCAACGCTGGCATGTACATGCTGAACCAATAAATAAAAAC ACAAGGTCAAAGGTTGTCGGAAGTCTATATCGCCCCCCCGTCCCTTGACA TTGACCGGTATTTTGTTATTATGTCTGCAGCTCGATAACATTGTCGACGC CATGGAGAAGACAGCTGCTGAGTGCTTATCCTTTGCGCCGTCCCTGAGCG AGGAAGGATTCGTTGACGTTCAAAGTCGGTACAAGAGGAAGATGAAAAAA GTCGTCAGAAAAATGAAACGAAGCGTAAGTAAACAATATATTTAGGCAAT AAATGTCTTAAAATATTTGTTTAATTTTGAGATGTGCAGTTTGGAGCCTA TGATGATTATTGTTCGACAGTTGTATAACTATAAGATACAACGTATGACA ACTTTTGTTTGGGGCATTGGTTTGAAAATATGCATAACTTGGAAACTAGA TGACCCCCTACCCCCAGCTCCGTTTGAAGCTACACCCCATGAGAATTATA CTTGAAAATGTGACTGAGGCAATATCACTTAACATTTTTTTTAAATCTAT ATCATTCTATCATCACAGGTGAGAAGGCCCTTTGAGAAGCTACGTGGGAA AGCTCGCAAGAAGTTCGGCGTCTTGCACATGGGGCTATTGGATGACGTCA CGAAACTGACCCACGGATCACGTGGCTATGACGTTACGTCCATTCTGGAG ACGTTCAGAATGACCGCTCGTGAAGCCAGCGAGTGTTACGGAAAAGGCGT ATCCTGTCCCAAGTAGTAGACATGTTCAAGTGTCCAGAAACCAAAAACAG TGAAAATTTACAATCCTGTGTACATGTCGCAAAACTACCAGCACAGTCTG CTGTAATATATTAG

Coding sequence (CDS) from alignment at Sc0000026:1638648..1642411+

>Blg00077.0 ID=Blg00077.0|Name=Blg00077.0|organism=Branchiostoma lanceolatum|type=CDS|length=864bp|location=Sequence derived from alignment at Sc0000026:1638648..1642411+ (Branchiostoma lanceolatum)
ATGATCAACAAAGTCGACATGAACGGCACTGATCCATTTCAAAGGCTACA
GCTGATGTTGGAGGAGATGGGGGTCGCCGCAAAAGTTCTAAGCATTCTGG
AGAAGAGTTCTATCGTTACTGACAACGCAGAGATGAAAATAAACCTAGAC
AAGCTTGTCGAGTCGTTACAGAAGAGGAAGCGTTCCCTTAGCACTCATCT
CGATAACATTGTCGACGCCATGGAGAAGACAGCTGCTGAGTGCTTATCCT
TTGCGCCGTCCCTGAGCGAGGAAGGATTCGTTGACGTTCAAAGTCGGTAC
AAGAGGAAGATGAAAAAAGTCGTCAGAAAAATGAAACGAAGCGTGAGAAG
GCCCTTTGAGAAGCTACGTGGGAAAGCTCGCAAGAAGTTCGGCGTCTTGC
ACATGGGGCTATTGGATGACGTCACGAAACTGACCCACGGATCACGTGGC
TATGACGTTACGTCCATTCTGGAGACGTTCAGAATGACCGCTCGTGAAGC
CAGCGAGTGTTACGGAAAAGGCCTCGATAACATTGTCGACGCCATGGAGA
AGACAGCTGCTGAGTGCTTATCCTTTGCGCCGTCCCTGAGCGAGGAAGGA
TTCGTTGACGTTCAAAGTCGGTACAAGAGGAAGATGAAAAAAGTCGTCAG
AAAAATGAAACGAAGCGTGAGAAGGCCCTTTGAGAAGCTACGTGGGAAAG
CTCGCAAGAAGTTCGGCGTCTTGCACATGGGGCTATTGGATGACGTCACG
AAACTGACCCACGGATCACGTGGCTATGACGTTACGTCCATTCTGGAGAC
GTTCAGAATGACCGCTCGTGAAGCCAGCGAGTGTTACGGAAAAGGCGTAT
CCTGTCCCAAGTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00077.0Blg00077.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00077.0-exon-Sc0000026-1570713199:1638648..1638711Blg00077.0-exon-Sc0000026-1570713199:1638648..1638711Branchiostoma lanceolatumexon
Blg00077.0-exon-Sc0000026-1570713199:1639152..1639316Blg00077.0-exon-Sc0000026-1570713199:1639152..1639316Branchiostoma lanceolatumexon
Blg00077.0-exon-Sc0000026-1570713199:1640300..1640443Blg00077.0-exon-Sc0000026-1570713199:1640300..1640443Branchiostoma lanceolatumexon
Blg00077.0-exon-Sc0000026-1570713199:1640738..1640917Blg00077.0-exon-Sc0000026-1570713199:1640738..1640917Branchiostoma lanceolatumexon
Blg00077.0-exon-Sc0000026-1570713199:1641678..1641821Blg00077.0-exon-Sc0000026-1570713199:1641678..1641821Branchiostoma lanceolatumexon
Blg00077.0-exon-Sc0000026-1570713199:1642116..1642411Blg00077.0-exon-Sc0000026-1570713199:1642116..1642411Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000026genomeSc0000026:1638648..1642411 +
Properties
Property NameValue
GeneIDBlg00077