Blg00048.2 (mRNA) - B. lanceolatum

Overview
NameBlg00048.2
Unique NameBlg00048.2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000368:3817..13410+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00048.2 ID=Blg00048.2|Name=Blg00048.2|organism=Branchiostoma lanceolatum|type=mRNA|length=9594bp|location=Sequence derived from alignment at Sc0000368:3817..13410+ (Branchiostoma lanceolatum)
ATAAGTCATGCAGATGATAACCTTATTTCCATGATAAACGAGAAGCATTC ATAATACATCATTCGAAAAGGTTGAAATCATTTGGCGAAGGTAAGAGGTC GTGGAACTCTGTTGTGATTATCATGATTAGCACTTTTTACTCTCTACTGC ACTGCGCTTACATTTACATTTTCAAATCTGTAAATGTCTACATCACAAGA CTTCCCACATATGGACAGCTTGGCTATGACGCTAACATGTACCTTTCCTG TAGAAAATAATCATCCTGATGATTATCAGATACGACTTTGCTGTGCAATT GATCAGCTACCAGCTTTTTATTGTGATTCATTTCTCTATGCTGTTTGCAT TTTTCTTTTATTCTTTATGACAAAGACAAAATAGTTGTCTTGTCTCCATG AACGTAAACAAAAATGGCAGGGCATCGATTAAAACGGGCGTCTTGCCTTT AACTCAAAACGCTTGTAAATCTCTTGGTCGTCATGAAGACTGCAACAAGT TCATTTTGGGTGGTCATCCTTTATCTGTCGCCTTGCATGGCTAACTTGCA GTAACTTGCTCTTCACCTTGGCACATCCTGGCCAACAGTATGCCTCCCTA TGACAGACGAGTGTTTCGTCGAAGCTGCTCTGAGGAGGGCCTCTGGGAGG GACCGACGTGTGACCGTGTCAAGTGCAAGTCGCCCCCACCCATGTTCAAG GGTCTGTACAACTGCACCAGGGGGCTGGACTACCAGAGCAGGTGTACTTT GAAATGTGGAGAACATGATAAGGTACACATGTCAGACTCTTTTGTTTGTT CTCAAAAGACATTCCATTTCCTTGGTACATTGGTAATGGGTAACTTGGGG TCTGGATGCATCACAAATGCTGCAAAATAACAGAGATTGAAAGATACATT CACGTAATGGCAGCAGTCTCAATGATTAAGATTGGGGGATTATGGAAAAA CGCATGTTGGAGAACCCACAAATTGCAGTGCAAGACAAAACTATTGAGAT TTCATGTTGTAGCTAGTGTATAACCTGATGGCATTTTCATCCGTTTGCCA TGTGTTTTTTTATTAACTGCAAAGTAGCTGCCAATATAAAATGATTAATT AGAAATCGTTAGGAGCTTAAGAGCCAATGTCTGTAAGGATCAAACAATAG TGCTCACGGTCAAAAAGTCGATTTGGCTCATATTTTGCACAGAGATAGTA CTTGGCCCCCAACCCCTGAAAATAGCTTTCTTTCCGCTCAACACCCATCG TTGCCATGGCAACGGCCCAATCAAGTTTTGGGGCCATTTTGACAGATTTG TGTATGGCGACAACATGGAAATTGGCAAAGTTTAGAGCACGCTCACTGCC AAATGCTTTATTGTAGCGCAAAACTGAATAGGATCTTTTTAGACCAATGC TTAAACTTTTAGAAAAATGCTGTGAAGTTGATGTAAAGATACATTTAAGC ACTTGGGCATCCTCAAAACAATATGATGTTTTAAGGCTACAAAAAATTGT CATTTTTGCCGAACTTTGAGACGCTGAAATTTGAAAGACAAATAGATACA TCAAATAGCTACTGAATGAATGCTTGCAAAGCTTGGGTTCTTGTTTCAAT AGTCTGTGGTTGCTACTAGAAGTAGGTCACTTTTCGTGATTTCATTAAAA ATGGGATTTTTGCAAACTTTAAAATACAATATCTGACAAACTAAGATGTT TCTGTAGTTCATTTTCCTGTCAAAGGTAGACCTTATTGTTGTCTATAGAA TGCATGCTAGCAAAGGTTTCGATAGTTTTCCTTGCCGTGAACTTGTCCCT GAAAGTAGGTCATTTTTTAGACATGTCATCAAATGTGGATTTCTGGCTGT CTTTCAGCTGATGAAAATGCCAAAATTAGATTTTATTCCGGCTCAATTTT TTTGTCAGATGTTAACCTTATTGTTGTCTATCAAATGAAAGGTTTCAAAG CCTGGGTTCTTGTTTCATAGATGTGTGGCAGTCCCTGAAAGTAGGTCATT CTTTGAGTTGTCTCAAAAATTGGATTTCTGACTTTCTTTGAGCTGATGAA AATGCCAAAGTGAGATTTTCTTTTGGCTTAATTTTTTGTCAGATGTGGAC CTTATTGTTGTCTATTGAATGCATATTTTCAAAGCCCGGGTTCGTGTTTC ATTGGTACGTGGCAGTCTCAGAAAGTAGGTCATTCTTTGCACTTGTCTCA AAAATATGATTTTCGACTGTCTTTCAGCTGATGAAAATACCAATTTCAAA ATAAGATCTTTTTTTCGACTCAATTTTTTATCAGATGTTGACCTTACTGT TGTCTATCCAATGAATGGTTCCATCGATTTTTCAAAGACAAAGCAACTAT TAACAGATAATCCAAAAATGTACTGTCGTACTATGGCAGCAATCCAACAC TATACATCAAAGTAATTATCAAAATCGTAAGATTCATCACATATGTGATA CACAAACCATGTGAAAGTAGACTGTAAATGTCTTACAATTGTATGGTCAG CAAATTGAATGTAAGTAGCTTAGGTTTCTCGAATCAAAGTATTATTAGTA ACTTGCGATCGTAGTTGCTAGGGGAATTACACTTTTGATCAGAGGGTCAA TCCCGAGTCATGCCATAGCCAGCCACCGTCACCCATTCATGCAACCTCTG GCTCTGCGACAAGCCAGGGATGGGTTTGGAGTTTGTGGTCATTAATTGAA AAACTTACTAATTCTCTTTTCCTGAACACTGCCAGAAGTGGAGGTATTCA TTTACCTTAGCCAAAAAGGCAGATTTGCGTCGGCGGTCTGTAATGGTTGA TTAACATTTATTTCACAGCATTGCAAAGACAGCTGAAAAAAACCTTTCAG GTATACGCAAACTAGAAATGGCAGAAACGATCGCACAACAATATAACAAG ACCTTAGTCTTTGACGCCATTCGTTTGATGGACAGCACCATGGTAAATTA ATATCTGATAAAAAGAAAACAAATCGCATACATGTGGGTATCTTAATGAC CTCAAAGACAGCCGAAAATCCCAATTCGGGCAAAAAGGCAAATATTGACC TACTTTCAGATACAGCCACACGGTAATTAAACAAGAACCCAGGCGTTAAA GCCTTTTATATGATAGACAACAATAAGGTCAACATCTGATAAACATTTGA GTCAGAAAAAAAACCTTACTTAATGTATTTTCAACAGCTGGAAGACAACC AAATATCCCAATTCTGAAACACTTTCAGTGACTGCCACGTACCAATGAAA CAAGAACCCAGGCTTTGAAAATATTCAATTGATAGACAACAATAAGGTCC ACATCTGACAAAAAATTGAGCCAAAAGAAAATCTCACTTTGGTATTTTCA TCAGCTCAAAGAAAGTCAGCAATCCAATTTTTGAGACAAGTGCAAAGAAT GACCTACTTTCAGGGACTGCTACATACCAATGAAACAAGAACCCAGGCCT TGAAAATATTCAATTGATAGAGAACAATAAGGTCCACATCTGACAAAAAA TTGAGCCAAAAGAAAATCTAATTTTGGCATTTTCGTCAGCTCAAAGAAAG TCAGAAATTCCATTTTTGAGACAAGTGCAAAGGATGACCTACTTTCAGGG ACTGTCACACGTCGATGAAACAAGAACCCAGGCTTTGAAACCTTTCATTT GATAGACAACAATAAGGTTAACATGTGATAAAGAATTGAGCCGGAATAAA ATCTCGCTTTGGTATTTTCATCAGCTGAAAGACAGCCAGAAATCCACATT TGAGGACAGGTGTAAAAATGACCTACTTTCAGGGACAAGTTCACGGCAAG GAAAAAACATCGAAACCTTTGCTAGCATGCATTTTATAGACAACAATAAG GTCTACCTTTGACAGGAAAATGAACTACAGAAACATCTTAGTTTGTCAGA TATTGTATTTTAAAGTTTGCAAAAATCCCATTTTTAATGAAATTAAGTCT AAAAAGATCCTATTCAGTTTTGCGCTACATTAAAGCATTTGGCAGTGAGC GTGCTCTAAACTTTGCCAATTTCCATGTTGTCGCCATACACAAATCTGTC AAAATGGCCCCAAAACTTGATTGGGCTGTTGCCATGGCAACGATGGGTGT TGAGCGGAAAGAAAGCTGTTTTCAGGGGTTGTGGGCCAAGTACTATCTCT GTGCAAAATATGAGCCAAATCAATTTTTTGACCGTGAGCACTATTGTTTG ATCCTTACAGACATTGGCTCTTAAGAACCAATATACATTGTATACATTTT ACCAAATCTAGTTGTATGATTTCTTCTCCATTAGATGGGTACTACCATAA CCTGTCAGCGGGATGGCAACTGGGACGGGGTTTTCAAGATGTGTAAGAAC CTGAAAGGAGACTGTCCCAAGATACAGAACAGGGATGATGTTGCCTTCCA GTGCAGAGGCTCTAGCATTGGTGAGCGCCTATATCTTAAGATTGATGCAA CAGTAGTCCTCCCTTGTGATAACAACAACATGCTAGTTCTAGCTGTTTGT CATCATGATTCAAATCTGGCGAATATTAATTTATTAGGAGCAACATGCAA GGCAGTCTGCACGCTAGGAGGGAATATTCCAATCTTCACAAGAGCAAACG ACAAAGTGTTCCTGACTCTACGTAGTGAAGATCGACGAGCGTCCCCTCAC AGCTGGTCGTACAAGTCTTTGGTCGACAAGTTCGAGAAGATGGCCAAATC CAAGATGACGATGAACACCGTGAAAGACGTTCTGTTGACGTGTACTGGAG GGCTTGTCTGGTACCCTGACCCACTGGATGTGGGATGTGTGAAAGAATGC AGTGAGGTATATATAATATTAACACCAGCACGTTATCTTATTTTGAACAT ATCCTTACATTGAAATGTTGTTCTTAAAGGAAAGCTACACAAAATGTTGA AAATCCTGCTATGCTATGCTTAATATATCCCAAAGTCAAGTTCTTACTTC AGGTTGTTTCACATAAGTCCGTCATAGTTTTGGGATCTTGCACCGTTTGC AACTTATGCCATGCTGACGCCTTCTCACCTGATGATTTTGGTAAACGAAA CACTGACGTCATATAATTCAATCATCAGGTGAGAAGGCGCGATAATCTCA CCTGATAATTGAATTATATGACGTCAGTGTACTGATTTTTCACCTGATGA TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTCCGTGCGTCAGTCTGTGTGTCTTGGTCACACA CAGACTGACGCACGGACACATACACACACANNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNGACTTTCAAGCGTACATTTCTCTA GGAAAGCGGACGGTCCTCCAGTTGTAAGCGTACATTCCTCTGGAATTGCG ACATTTCTCTGGGAAAGGGGACATTTCGCGGACACCCCCACCGGCCTGTG GAATCGGCAGAAAACCTGACAAATCGTTTCCTACTTCAGCTATATCACAA CATCCGGATTTCTGAGCCGTGCAGTGAGATGGCTAATACTATCAGCTCGG AAGGTAAGCATAGTTTTGATTGAAAACTGAGGCAGGTTTGAAATGAAAGC GACCGCGCGGTGGACGATCAGTTCTGTGCAAGGTTTTAATGGCGGCCTGT TGCACGCCCGACAAACAAAACAACGAGTTTTAGCCTGAATATCCGAGTGA TTGTCAAGATATAAGGCTCCACTGCTTAGCACACGTTTATGAGAGAAGTT TATACCAAGATGTTAGTCATAGTTATCGAATATTTCTTGTCAAAAAACCG CGATATACACATAATGTCCAATAACATCGCCACACATGACGTCACACATA CATGTACGTACGCGGCAGGACAGTTGAGCCTTGTTTCGACAAGCATACGG GCGGAAGCCTTGTCTCGACAAGCACGCGGGCATGTAGCCGCGTTGTACAA GAAATACCCTATAAAGACAACTAGAATTGTGACAAATCTTCTCATAGATA CATGTACTAGGCAGTGGAGCCTTATATCTTTGTAAAAACCCAAAGGGGCG AGTACGCCGCTCCCGGTATTAGAACCCCTGCCAATCCCGATCCGCACGGC TTGGGAAATCAACGCGCTAACCACTAGGCTAAAAGGTCCGGACGAGTTAG ACTGGTCAGTTAGTGGAGGTTGATCCCCACTGTTACACAATCTGTACATC TTGACAATCACTCGGATATTCAGGCTAAAACTCGTTGTTTTGTTTGTCGG GTGTGCCATTGAAACCGTGCACAGAACTGATCATCCACCGCGCGGTCGCT TTCATTTCCAACGTGCCTCAGTTTTCAATCAAAAACTATGCTTACCTTTC GAGCTGATAGTATTAGCCATCTCACTGCACGGCTCAGAAGTCCGGATGTT GTGATTCAGCTGAACTAGGAAAGGATTTGTCGGGTTAACCGCCGATTCCA CAGGCCGGTGGGGGTGTCCGCGAAATGTCCCCTTTCCCAGAGAAATGTCG CAATTCCAGAGAAATGTACGCTTACAACTGGAGGACCGTCCGCTTTCCTA GAGAAATGTACGCTTGAAAGTCGAGGAATGTCCGCTTTTCTGGAGGAATG TACCAATTCTGGAGGAAGGTCCAGATTCGATTGGCTTTATCTATAAAAAA TCCTAATCGTATTTTGCAACGTGTTAACTGTAGACTTTTACACAGTGGTT TAAAGCGCATAAGACACCAAAATACAACATTTTCTTATAATTATCTGTTC TGGGAATAGTATTATTCTATGAATATAAACGTTTAAAACAAATACACACC CTTCTGATGTTATCTAACATTGAACTATTAGAAACCATACTTTCAGCTCT TGATTCGTTTCTGATATTCTCATCAGGTGATTGATCAGTGACTTGCCCCC TCATGACGTCACAATGAACACTGCAGCCGGTTCGGAACCTAACACCATGG CTAACACCAAATCCATTATTTGATGAGCAAACAGTACTTAATTATCGTGA TTACATTAAATTAAAAGACATAAAAATATTTACAGTATTTTGTTTGCTTC TCAAAAGAACTTTCTTTCAGAGTGCAGTGCAAAGTTCCAAACGGCCGGCT GCCATGTTCATTGTAACGTGATGGGGGGGGGGGGAAGTCACTGATTAATC TAATTACTAGTACCTGGTGGGAAGAATCAAAAGCTAGAGGAATGATGTTT TCATGATTCGATGTTCAATTACATCCAAAGTGTGTATATTTTATGCAAAT GTCTGGTATCAAACAATATTATTATGATTTATGTACTTTCAGGAAATTCT TAATTTTGATGTCATTGGTGCCGTATGCACTTTAACAAATTAACTGAAGC TGCGAAAGCGTCAAAGTATGAAGATAATTGTTGAATGAATATTGACCCCA TACACCGTGTGGTTCATTGTCTGGTAATTTTTAGCTTAAAAAGCCGTTTG CTTTAGCCCACTGGTATGAGACTTTTTGTTGTTCTTACCTAAACATGAAA ACTTCATGATGGTGCCAGTGGTTACAAATTAAACATTTGACTTTGCCTAG TACGCATTTATCAGAAGAATGGCGTTTTCAAAGCTGTGAATCGGTAACCT TGCCATACAATACTCACATACGCATGTTCAAACATCCTATGTACATTCAG ACATACATACATATATACACATACACATATATATTACATTTTACAATGAA CTGTCCCAAATATGTCTTTCTCCAGGTGCAGCCATTCCCTGCAAATTGCA GAGAAGAATGTGAATGTAAGGATCCAAACGCCATCGAGAACAGAAACGGA AAAGGAAAGGATAAGTCCAAGGGTGTGTTAGATCCCATTTGGGACAGAGA AACCAACTATAGCCAAGAGGTCTCAGCTGAAAAACTGATTGAGTATTCCT ATAATGACAAAGCTGAAGACGGCTTCGACTATATCTAAATGCATGATGTC AAATGTATATACTGGATACTTGTGTGATAACCCACAGAGTATGACAAACC AAGCACATGTACATTTGCAGCTTCAGCGTAGCTGTGACTAAGTGGGGTTC AGTGAGTATCCAGCCCACAATGCCTTGCTAATCAGGATACATATCTTCAG TGGAAGGATGCATCTGGGAAACTTAGTGAGTAGTGCTAGATGTACATATA ATATATGATAATCCATATCAAACAGGACATCACAACATAAATGCATGACA TATTCTTCCGATGACTGCCATGGTATTTGAATGGTTGGTGAACAGCGTTG GCATTTGGTCATTTGGATGACAGGAATTGCGGAATTGATGCTTATGAAAT CACCCTGTTTTATGATTATGTTTGTCTGGTTCTTCTGACGGTAAATTGCT ATCATACTTGTGCGATGTTTTCAAAAAGAGTGTCAATTTCTGGTCGGAAA AGTTTTCATATTTATCTTGAATGCCTCCTTCGGGAGAGAAAGCCACGAAG CATGCCAAGGAAAAATCAGTTGTCTGACAACAAGGACGTGAATGTTACCA CAGAACCACTTCCCAGCAAGGAAGTAGTATGGCGTTGCTTGGAGGATGAG GATTGTGTATTTTCCTATGACCTCATAACAAACACTTTTATTGGCTATAA TCACTGACGATGGATTGCAGGGACGAAGGTCACAATTACTTTTGACGTAC AGTAACATTGATTCGTTTGAAGCATATATTTGTACCTTCAGTCATGTACC AAGCTGTATTATTGCTATAGTGTCACCCACATTGGTCAAACCATGTAGTC ACACTAGTGGATCATGGAACGTAACGTCACCAGTTGTCGTGCTCTACCTA TTATCGCCCACTTTGGGACACATCTACACATGTCAAGGTGTATTTTACCA AAGGCAGTTCTTATGAGCAATAAAGAAAGACATAAGTATGATCC

Coding sequence (CDS) from alignment at Sc0000368:3817..13410+

>Blg00048.2 ID=Blg00048.2|Name=Blg00048.2|organism=Branchiostoma lanceolatum|type=CDS|length=801bp|location=Sequence derived from alignment at Sc0000368:3817..13410+ (Branchiostoma lanceolatum)
ATGCCTCCCTATGACAGACGAGTGTTTCGTCGAAGCTGCTCTGAGGAGGG
CCTCTGGGAGGGACCGACGTGTGACCGTGTCAAGTGCAAGTCGCCCCCAC
CCATGTTCAAGGGTCTGTACAACTGCACCAGGGGGCTGGACTACCAGAGC
AGGTGTACTTTGAAATGTGGAGAACATGATAAGATGGGTACTACCATAAC
CTGTCAGCGGGATGGCAACTGGGACGGGGTTTTCAAGATGTGTAAGAACC
TGAAAGGAGACTGTCCCAAGATACAGAACAGGGATGATGTTGCCTTCCAG
TGCAGAGGCTCTAGCATTGGAGCAACATGCAAGGCAGTCTGCACGCTAGG
AGGGAATATTCCAATCTTCACAAGAGCAAACGACAAAGTGTTCCTGACTC
TACGTAGTGAAGATCGACGAGCGTCCCCTCACAGCTGGTCGTACAAGTCT
TTGGTCGACAAGTTCGAGAAGATGGCCAAATCCAAGATGACGATGAACAC
CGTGAAAGACGTTCTGTTGACGTGTACTGGAGGGCTTGTCTGGTACCCTG
ACCCACTGGATGTGGGATGTGTGAAAGAATGCAGTGAGGTGCAGCCATTC
CCTGCAAATTGCAGAGAAGAATGTGAATGTAAGGATCCAAACGCCATCGA
GAACAGAAACGGAAAAGGAAAGGATAAGTCCAAGGGTGTGTTAGATCCCA
TTTGGGACAGAGAAACCAACTATAGCCAAGAGGTCTCAGCTGAAAAACTG
ATTGAGTATTCCTATAATGACAAAGCTGAAGACGGCTTCGACTATATCTA
A
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00048.2Blg00048.2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00048.2-exon-Sc0000368-1570713199:3817..4588Blg00048.2-exon-Sc0000368-1570713199:3817..4588Branchiostoma lanceolatumexon
Blg00048.2-exon-Sc0000368-1570713199:8101..8236Blg00048.2-exon-Sc0000368-1570713199:8101..8236Branchiostoma lanceolatumexon
Blg00048.2-exon-Sc0000368-1570713199:8354..8622Blg00048.2-exon-Sc0000368-1570713199:8354..8622Branchiostoma lanceolatumexon
Blg00048.2-exon-Sc0000368-1570713199:12242..13410Blg00048.2-exon-Sc0000368-1570713199:12242..13410Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000368genomeSc0000368:3817..13410 +
Properties
Property NameValue
GeneIDBlg00048