Blg00045.0 (mRNA) - B. lanceolatum

Overview
NameBlg00045.0
Unique NameBlg00045.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at xfSc0000829:165..3999-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00045.0 ID=Blg00045.0|Name=Blg00045.0|organism=Branchiostoma lanceolatum|type=mRNA|length=3835bp|location=Sequence derived from alignment at xfSc0000829:165..3999- (Branchiostoma lanceolatum)
TCTACATTTTCAACTCAGAGTCCATATGTATAATAACAAGAATTGAAGTG ACAAAACATGGTGTCACAGCCAACAAGTCTTTTGTTCCTGTGCACAAAGT GACACTGGTGAGGTTATCTAGTACCACTACAACTACACTCAAGGCTACCA CACTGGTATCATTTCAACAATACCCAACTAGCTGTAGCTTTGCTTCTACA ACAACACTCAAGGCTACCTCACTAGCGTCACTTCTACAGGTACCCTCAAG GCGGGAGGGAAAGAAGTTTCTTTTTTTTCTTTTTTTTCTTTTTTTCGAAA CCAGGGAAAATTCAATGCACACACAAATGTCATCCATAAAATGTACTTGC TGTGGTCTACATAAGCATGTTGTGTAGCTGTGGTCCCAGTGTCACCTCAC TGAGGATGAACTGAACTGTGGCATTTCTTTCTCTAATTTTTCCAGAGTGA CTTGACAAGTGAAGACTTTGGCGGCATTGGTGGCTCTTGCTAACATACAG TAAAAATACAATGGAAATGCATGTTAGCAGTGTGAAATTTGCAGTGGAGA GACCGTAAAAACTGCAATAATAAAACCCCTGGTACATTTCAAGATTAACT GTTTTGACATACTGAAACAAGCTATTTTAGCATGTCTTTTCCATTTTCCC AGAGTGACTTGACAAGTGAAGACTTTGTCGGCATGGGTGCCCCCCTCCTG TACAAGATGTTTAAGACGAAGACGGACCATCCACTTCACGCGGCCATCAG GAACCAGCGGGAAGACGTTGTTTTCTTGTACCTGATCGAGTTTGATTCAC AGGTGAGATCAACATGCTTTTTAACTCAGAACTGGATCAGATGTTTCAGA ATCACTACTGTAAAGATATTCCTATAATTCATTCAACTTAGAGGAATTTT GTTGTATTGTTTGTTTGAAATTTTAGAATTAGCTACAGAATTTCAGATTC AAGCTCTGAAGAGTGGCAGTAAGGTTCAACTTTGTAATTAGGTTTTGTTG ACATACTACTTTAATTTTACGCCAGAAATAGTTACTCAAGCAACTGGATA AAATTTTGAAACAGTCAGATGTTTCAAACAGCATCCCTCACTGACGAAAG GTAGCAGATGCTGTCTGAAACGTCTGACTGTTTCAAAATCTTACTACCTG GATGTCTAACCTTCATCAACATACTTTAATTTTATGTTGTGTGCCTACAT TTTTAGGTTAGGTGCACTAGTGAAACTAGTCCCAGAATGAGTTTTAAGCC ATGAGAAAACCTTTGAAATTTTTCCCCATTAAACAGCAGAGGTCATGGTA GATCAAGGAAATCTTGATTGGAGTGTGTCAGAGTGTGAACCCGTTGGACA GAGTTGCTTGGAAGCATGGTGTGAAGACTTGCCGATTGTTGCCCACTTTT CTCCCGAGATGACATCACCGATGTCCTCTTTCAAGGTTCAAGGTTCTCAG GGACCCCAGCAGGTGTATTAATCAAATACTGGATACTACAACTACTACTA GTGCTAAAAGTCCTGTCTGTTTCCCCCTTTTAGCTGCCAGGTAAGCTGAA TGAAGTGGACAATAGCGGTGACCTTCCCCTTGACCTTGCCCTGTCCAAGA GACAGGAGAGCATTGCAAAGACTTTGGTCACTCACAAGGTCAATGTTGAT GCCAAGGACTCCACGGGACAGTGCTTACTGCACAAGGCCATTAGAAGAGG TGAGTTTATCATGTGACAATGAATTGGTTTAAAACAAAGCCATTGTCTTC AATCTGTATCTATGATGTCTATGATGTAAGTAAAAGATTCTAGATTGAGA TTTGTTCCTGTGCAAGATTTTGTCGTTTCCAACCAGTTGTAGTTTTTATC AGGAGGGAAAGTGTATCTAACGGTGACTACATGTACAACTAAAAAAGTTG GAACCCAGCCTGCTTACTGCAAGTCATTTCATACTATAAAGCCTGAAATC TACTCTACCTGTACTGTATCATTGACCTTGATCCTGGGGTCAGGGTAGCG GGTGGTCCTTGCATCACGAGGCGCTGGTTTCCCTTTATTCTTGTTGGTAC TTAATTTTATAGCAGCACGGTAAAGCCAGGTTTTTTCTGCATCACATACA CTACCAACTGGATTTAGGGTTAAACAGCCCTTTTGGGTGGTCCTTACCTT ATTTAACCTGAAAAATGGGTTAAAAAGAGTGACTTTTCCCTCATTTTCAC CCCCCATTTTGGGTGAGGACCCCAAAACGGCTGTTTAACCCAAAATCCAG TTGGTAGTGATATATGGGTTGTCATGAATTCGCAGAAGAGAGGTTGCCAC GCAAACTGCAAAAATAAAACTGCGAACATTTCGAAGATTTACAATAAGTT CTTTTCGCAATTATAGGTGATGAGTTTGCAGCAGATTTCTTGATCATGCA CGGAGCGAAGGTGAACCTGACGACCCAGTCCGAGGAGACGCCCCTGCACC TGACAGCGGGGTACAACCCAGACTTCACCCCACAGGACACCATGGAGGGC ATGGCAAGGGTCAATGACCAGCTGCTGGCTAACGGGGCCAACCCCAATGC ACAGGACTATACTGGCAGGTATGGGCTGGGAGGTGTGGGGGATTTGTGTT AGTGTCGTTCACCTTTAAGTGCCTAGTGGCACATAGGTCAGCAAGTTTCC TTGATGTTTCAGTAGCAGGGTATATTTTTACAATGAGGGGTTGCTAGTAC AATGTACTTCCCCTTCAACATGCTCTAGGCACCTCTTCAAACAGAGGACC CCCTTCCTAAAAGACAGGTGCAGCCCCAACCGAGATGCCCTTACCAGGAT TGAACCGGGGTCTTCTAGTTAGAAACTAATTGGAACCAGGAGCTCAACTG TGATGCTGCTGCCAGTTTGGCTACAGGGGCACCAGTGGATGATACATGAC TGGTGTTTAAAGCCCCTGTCACACATTCATGACCTTCCCACGACTTTGCT CCCGACCACTCCCCAACCATGGTCGGCGTGTGGTTGGGAGTAGCCTGGAA TCCTTCCTAGCTCCAGCTCTACAGAAGTACACGGCTCACATGAGCTATTC AAGTGTAGGTACCTTGTACACATAGGACTAGTATAGATATTGACTGTACT GTTCCATCTTTCTTGTGGAATGTTGGTGTGTCTGGTAGTCAGCATTTTCA AAGCACCCCATAACTTTCTGTAATACAAAATCTTAACTTTATTTTCAGCA CACCTCTTCACAGGGCAGTGGAGTCCAGAAATGAGAAAGCGTTCTCCTCT CTCTTACAGCAGAGCAAGTGAGTTCTTCTTCTTTTTTGGTGACGCATCAG TAACGGAAGCATTTTATACAGCATTGCGATCACTCTGAAAATGTTTCTTT TGTTGCACAAATGCATCCCCTAGAGAAAAACTCAAGCAGCTGTGGATATA TCTGTATGGTACACATGATACATGATAGTGGGTAGATGTCAGCAAAACCA AATGACAAATGCGATTTTGGGCCACGTAGCAGCGTTCAATGGTACTGCAA CAGAATTTATAGGATGTCATTTGATTAATGAAAAGGTTAAGGTTAAATCA TCATACATAAATTTTGCAAATTTGGGTGTGCACCGCCGAGATGGTTTTTA AACACCTTTCTTTTTTTTCTTTTTTTTTTAGCCTTGACCTTGAGCTGAAG AACAATGAAGGTCAGACAGTCCTGTGGCTGGCACTGGAGTCAGCCAAACA GGCCAGCAGTCCCGACAACCCCTTCTCAGACAACAGCCCATCGTCTGAGG ATGTGTATGGGGAGGGCAGCTATGCTGCGAGGCTCATTAAGGGGGGCAGC AGCGCCGATGCTATCAACCCTCACACAGGTGTGGT

Coding sequence (CDS) from alignment at xfSc0000829:165..3999-

>Blg00045.0 ID=Blg00045.0|Name=Blg00045.0|organism=Branchiostoma lanceolatum|type=CDS|length=812bp|location=Sequence derived from alignment at xfSc0000829:165..3999- (Branchiostoma lanceolatum)
ATGTCTTTTCCATTTTCCCAGAGTGACTTGACAAGTGAAGACTTTGTCGG
CATGGGTGCCCCCCTCCTGTACAAGATGTTTAAGACGAAGACGGACCATC
CACTTCACGCGGCCATCAGGAACCAGCGGGAAGACGTTGTTTTCTTGTAC
CTGATCGAGTTTGATTCACAGCTGCCAGGTAAGCTGAATGAAGTGGACAA
TAGCGGTGACCTTCCCCTTGACCTTGCCCTGTCCAAGAGACAGGAGAGCA
TTGCAAAGACTTTGGTCACTCACAAGGTCAATGTTGATGCCAAGGACTCC
ACGGGACAGTGCTTACTGCACAAGGCCATTAGAAGAGGTGATGAGTTTGC
AGCAGATTTCTTGATCATGCACGGAGCGAAGGTGAACCTGACGACCCAGT
CCGAGGAGACGCCCCTGCACCTGACAGCGGGGTACAACCCAGACTTCACC
CCACAGGACACCATGGAGGGCATGGCAAGGGTCAATGACCAGCTGCTGGC
TAACGGGGCCAACCCCAATGCACAGGACTATACTGGCAGCACACCTCTTC
ACAGGGCAGTGGAGTCCAGAAATGAGAAAGCGTTCTCCTCTCTCTTACAG
CAGAGCAACCTTGACCTTGAGCTGAAGAACAATGAAGGTCAGACAGTCCT
GTGGCTGGCACTGGAGTCAGCCAAACAGGCCAGCAGTCCCGACAACCCCT
TCTCAGACAACAGCCCATCGTCTGAGGATGTGTATGGGGAGGGCAGCTAT
GCTGCGAGGCTCATTAAGGGGGGCAGCAGCGCCGATGCTATCAACCCTCA
CACAGGTGTGGT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00045.0Blg00045.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00045.0-exon-xfSc0000829-1570713199:3198..3999Blg00045.0-exon-xfSc0000829-1570713199:3198..3999Branchiostoma lanceolatumexon
Blg00045.0-exon-xfSc0000829-1570713199:2301..2466Blg00045.0-exon-xfSc0000829-1570713199:2301..2466Branchiostoma lanceolatumexon
Blg00045.0-exon-xfSc0000829-1570713199:1432..1633Blg00045.0-exon-xfSc0000829-1570713199:1432..1633Branchiostoma lanceolatumexon
Blg00045.0-exon-xfSc0000829-1570713199:733..801Blg00045.0-exon-xfSc0000829-1570713199:733..801Branchiostoma lanceolatumexon
Blg00045.0-exon-xfSc0000829-1570713199:165..368Blg00045.0-exon-xfSc0000829-1570713199:165..368Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0000829genomexfSc0000829:165..3999 -
Properties
Property NameValue
GeneIDBlg00045