Blg00038.0 (mRNA) - B. lanceolatum

Overview
NameBlg00038.0
Unique NameBlg00038.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:132822..137937+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00038.0 ID=Blg00038.0|Name=Blg00038.0|organism=Branchiostoma lanceolatum|type=mRNA|length=5116bp|location=Sequence derived from alignment at Sc0000280:132822..137937+ (Branchiostoma lanceolatum)
ATGAGGTGTTGTCTGATCTGATAAGGAACCCAACACCCTCGCTCTGTGCC AAACGATTGTTGCCGTTACCTCCCGTGATGAATTAGCGAACTTGAGGGAG GTGCGCGTGCTTCGGAGAGAAGTGATGTTATTTGTTAGGGACTGGAAATA CCGCGGCAGGTGCAAAGTCTCGGTCTGCTGCAGTGCCCCCCTCCCTAAAC ATGGTTACAATCTCCAAGCAGATGTGCAGGTCTGTTCAAGTCAGTGGTGT ATGTTTTCTCTGATGTGATGTTAACTGCTTCACGCACTCCAAACGTGAAT CTAAACGTGAATATGATTATCGGTCTTGTTCTTAAACGGTCGTATTCACG TTGCCATGTTTCTGTCCATAGTCGCGTTGAACTCCACCGTCCTTCGCTAA TAGACGATTTTATGTCCAAAAAACGCGAGATTCAATTAACGACAAGATAA CTATCACCACATTCCGGACAAAGAAACAAGGTGTTACGGCCGCGGGTGTC GAGTATCCTTTTACATTCTGTCCAAACAGCCTGGTTATTATCTCCATGAA AAATGGAGATGATATTGTTTTTGGCTTGTCTGTTTGTGTGTGCTTTCGGA CCACTGTAGTAAGCATAGCTCAAGAACCTCTTGATGGATTACAAGGATAT TTGGTATATTGGCAGGTGTTGGGAAGCCGAAATTCAAGGTTAACATCTTC TCCGTGTGCCAAACGATTATTGACGATACCTCCCATAACGGATCAGCGAA AACTGATGTTATCTGTTAGGGATTAGAACCACTTTAAATTTTGGGGTTTT AACGCAATGGTAGGTTGGTGAACTCGCTTGGATGTACGCCCACGTCCGCC AAGTTCGACGATCCGTCAGGCTTGACTACCAGTAACTCCGAGACACGGCT CACCACGCCTCCCTATAAATCCACACGCGGGGCGGGGCGGCAGTCAGAGT TGGACCGGACCTGTGTGCAGGACAGGCGGACCCCAGACGCACCCCGTTCC GCGGACATACAGACGCCAATTCGGTCGGACCCCGAGCTGCTACATACAAG TGGCGAACAGAGCTAAGGTAGGAACTAGTGTTTTAACTTCTGAAGCTCCT ACGATAGGCTAGCAGTGGATCTTGAACGACAAACACGTGTGAGATTTTAG GTTATTTTTCTGTCCCTCTGACACCACGTTTTCGCAATATTTTTCTGTCT GTCCCATCCAGGTACATGAAGCCTACTTTGTAGTTTTCTTCCTTTCTATT TTACCGTCAGAACTATTCATATTGATACGTTGTTCTCCTTGTCTTGCCGC ACTGACATCTTGAAATATTTTCCCGTTTGTCCCCAGGAAGATGAAGCTGG TCCTGCCGCTCGTCCTTCTGTGCCTGGCGGGCGCCACCTGCGCCAGGACA GTCCAGGACCTGGAGTCGGAGCTGCTGCAGGCGATCCGGGAGATGGTAGG AGACCCACAGCAAGGCGACCCCGTGTATCCAGATTCGGAAGAAGAAGACT ATCCTTACACGGAAGGAGAAGAAGAAAATGGACTACGTGAAGACGACGCG ATTGAACCCGAGCCTGACTTCATGGAAGAAGAAGACCCACAATCGGAGCT GGTAGGTGTAAATTTTGTAGTATTTCTGTTTTCTTTGTGCTGATTATATA GCCAAAGTTAAAGTTATTGCATCAGTTCGATAACTTGTCCACAATGCACT GCATGTTAAGTTCTGAACCGACATTATATGGTCGTGATGTTTAAGTGGTA GATAGCTCTTAGGACAGAAAGCGTTTTTGACTGTAAGGTCCAATTTTGTT TGGCATTTAGAAAGAGAATAACTCAAGAAGGGTCGTCATAGTTTTCGGTT TGTAGATAGTTTAGTTGATGAGTGACATAATGAAATGTCTTTCCTGAAGG CACATTGACTCCGCGCCGGTAGTAGTCCTTGGTCAAGTTGCTCTATCAGG CAATTCAGGAGAATCCTAGCGAGTATCTAACCTGCTACGGAGAGGAGAGA AGCGCCTCTATGCCATGGTTGTCACAGACCTGTCGGTTACCTTATGCTTG TACAAGTGTATGATTGTTGCTTCCTTCGTTGATTCATGACGGGAGATTTA ACACATCGTCAAAGTGTTGTTGAGCGTCGATTAGACAACTGTAGTTAATG CTAATTGACCTTTGTCCGTTGTGCAACCTATATTCGTTGTTTCTAGAAAC ACCGCTAGAATTGCAAGTTTGGGAGACTCAAGTGTTCAGAACACCGTCTA AAAGCCTCGATGACAACACATTCCAAGACGACGAGGTCAACAATTTCCGT CCATTATCGGAACCGGTTGCCCTTATCATGGGGTGATGTAAAATTCGCTG GAATGTCAGATAAATCAACTACAACATCGGACAAATGTCACTTCCACATA GTTATTGACAACTGCAACTGGACTCAAAATGTGATCCATCATAAAACAAA CACCCTTTTGTTTCGACGCTTCGGCTCTGAGCCGTACAAAACAAACGGGA TGCCGTTTTATTTGACCCCTAAACCTTTCATTTTTGACACCAAAATATTG CTGGCGGCGTGGCAAATAACACTCTGCTTGGACAAGTTTATATATTAAGC ACTCTTTTCAAGCCAATAAAGGAACAACAACTGCTTTTTAAGGTTACATC AAGAAAATCGGATAAAGGTTACCCCCACCAAGACCACTGTTCTCATCTTC TATTCCAGTTTCTGTAACAAGAGTGCCAGTAAAAATTTAACTTGTGCAGT GCACTCCGCCACTTGGTTGCCTTAAATGACGGATTAAATTTTTTCCTGCT TGGCTCGACAGGAGTAACCAGCAGCAAATTTTACTGGGCGGTAGGAGATC TTTTGAGACAGTCGTTGGAGATATGTTCTGTGCGCTGCGCAGCAACTTTG TGTAGCTCCATCCAATCTGTTTTGGAGCTGCCCGATGAGCGTCCAAGTTT CTGCACCGTAGAGTAGAACCGGTTCTACAAGGGTAATAAAACTTGGACCT TTGTTAGGAATGTAAGATTTCCAGATTTTGTCCTTTTTGTTGATTGGGTG CCATGCCAGGGCTTTTCTAGCTTTATGGGAGGCATATGATGTAGGAACCG AGATATTTAAAGTTATCTTTGAATGAGTTCTCCAGACAGGCCGCCCGGGA TCTGAGTTTCAGTTTACCAGATATCTTACTGTCTTTGTGACATCACAAGG ATGCAGATTTTTCCAGAGATTGGAGAAAAGTTCCTCAGAATCTAATTTGC ATAACCAATGAGGAAATTTCACACATCCGCTACGTTCCATGTTAGGACTA TTTTAAACATGTGACATTTGTAACTAAGGAATACAGGAATATTGACAGAA ATAATATGATGTAGGACTGAAGAAGTCATATTGATGCATGCGTGCAGTGT TCGAAGGCCTTCTATAGTTACTATAATGTGATTCAATGATTACTCTTTAT CTATGGTACCTATTCAATCTCAGCTCGCCGAGACCGAAACCCCAGGAATG GACGAAAGAGAAGGTCCACAAGGCCCGTCCGGTTCACAAGGACCTCCCGG AGAGGTAAACATCAGAAATAAACAAAGAAAGATGTCTACTTTACAACTTA ATACGATGTACAGCTTTGCAACAACGAACTGTCTGCCACTGGCTGGACAT TATTAGATGCCGTTAAGTATATATTTCGAAAATGGACTAAACTCCATTCA ACATTTTGCACTACACTCATCCCTCTTTCACTGGGGATGTTGGAGGTTGT AAAATGTTTTTGCTTAATTTTGCTTCATCTGTCCTAACGCCATACGACTC TTTCCTGATGCCGTACGACTTTGTCCCGACGTCACATTCATACCTGACAC TTTTGTTTACAGTGTTCCTGTCCGCCTCCTTCAGGTGAGTTGGAGAGTCC GAGTATCTCACGGTTCTGATGCTTCACGTGTGCACTCCAACCTAGGCATG TCTACAATGTGTGTGTGTGTGTGTGTTTGTGGGTGTATATGTAAAAGATT CTTTAATGTTATAATCTTCTACATGTAGACAATTTTAATATTTTATGTAA ACATGTCACATCTTGGTAAATGTAAACAAGCTGACAATTCGGCCAGGTTG TCGTTTTTCTGAGATTTAAGACATTGAAGAAACCATTCTACTTATTTGCA TAATTAGGGTGAAAACACTATAATTCCATGGTGGTAAATAACGGGAACTT CATGCTTTTTGGCGTTAAGAAGTTAAGTAAGGTGAATATCGTTAGACCTA AATCGTACAAATTAGGCCCTCATTTGCACAAGTTATCATGCAATTATGCT CGAGAAACTTCCATACATTTGTACTCTGAACACCTTATTATGGTACTGAT GGCGCCTATGGTCTACTCCCTTCCACACGCAGGAATAAAGTACACCAGCC TGGGCTGCTGGAAGGACAGGTCCAACCGCGCCATGCAAGAACTCGAGGGG ACAGATCCACGCCTAGATGGCGGGTTCAGGGGTCGAGCAAATCCCATTCA AAAGTGTTACCAGGTGGCACTTTCTCGTGGCTTCACTTTGTTTGCTGTCC AAAAGAACGGGAAGTGCTTCGGGGCTCCTGGTGGGAACAACTACAAGAAG TACGGACCCTCCACAGCCTGTAAGCCGAACGGCGAAGGCGGGCCTTGGGC AAATGAGGTCTACAAGATAGGTCAGAATCTAAGTTATTATGCAAATTAGT CCTAACTTACATAATCGATGAGCAAACCTTCAATTGCATGGCAGTATGCT TGTGTAGTCAACCACCATTTGAGGAGCGGGGCCGCTGGCTTCGGATCTAG GTTAACGGTGGGCTGTTGAAAAACAGTTCCTTGATTTCACTATTTTAGTG TTTAACATATATCTCCCCGGTTTATTTGTTGTGGAAGATATTATGTAGAG TAGGGTGACCCGGTGTGTTTGGAGGAAAACGTGAAAGCATTTGCGGCGAA AGTCTTGTATCTCACTGAAATTTTGACCATCACAGACTAGTGGTGGGAAA AAGACGTTTAATGCTGTTTGTCACTGTTTTGACAAGCTTCCACTACTGTC TTTTATCTGCATGCCTGAGATTCTGCTCTACATGCTGTGAAAACTACACA CGAGAACGCCATATAA

Coding sequence (CDS) from alignment at Sc0000280:132822..137937+

>Blg00038.0 ID=Blg00038.0|Name=Blg00038.0|organism=Branchiostoma lanceolatum|type=CDS|length=918bp|location=Sequence derived from alignment at Sc0000280:132822..137937+ (Branchiostoma lanceolatum)
ATGAGGTTGGTGAACTCGCTTGGATGTACGCCCACGTCCGCCAAGTTCGA
CGATCCGTCAGGCTTGACTACCAGTAACTCCGAGACACGGCTCACCACGC
CTCCCTATAAATCCACACGCGGGGCGGGGCGGCAGTCAGAGTTGGACCGG
ACCTGTGTGCAGGACAGGCGGACCCCAGACGCACCCCGTTCCGCGGACAT
ACAGACGCCAATTCGGAAGATGAAGCTGGTCCTGCCGCTCGTCCTTCTGT
GCCTGGCGGGCGCCACCTGCGCCAGGACAGTCCAGGACCTGGAGTCGGAG
CTGCTGCAGGCGATCCGGGAGATGGTAGGAGACCCACAGCAAGGCGACCC
CGTGTATCCAGATTCGGAAGAAGAAGACTATCCTTACACGGAAGGAGAAG
AAGAAAATGGACTACGTGAAGACGACGCGATTGAACCCGAGCCTGACTTC
ATGGAAGAAGAAGACCCACAATCGGAGCTGCTCGCCGAGACCGAAACCCC
AGGAATGGACGAAAGAGAAGGTCCACAAGGCCCGTCCGGTTCACAAGGAC
CTCCCGGAGAGTGTTCCTGTCCGCCTCCTTCAGGAATAAAGTACACCAGC
CTGGGCTGCTGGAAGGACAGGTCCAACCGCGCCATGCAAGAACTCGAGGG
GACAGATCCACGCCTAGATGGCGGGTTCAGGGGTCGAGCAAATCCCATTC
AAAAGTGTTACCAGGTGGCACTTTCTCGTGGCTTCACTTTGTTTGCTGTC
CAAAAGAACGGGAAGTGCTTCGGGGCTCCTGGTGGGAACAACTACAAGAA
GTACGGACCCTCCACAGCCTGTAAGCCGAACGGCGAAGGCGGGCCTTGGG
CAAATGAGGTCTACAAGATAGATTCTGCTCTACATGCTGTGAAAACTACA
CACGAGAACGCCATATAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00038.0-exon-Sc0000280-1570713199:132822..132826Blg00038.0-exon-Sc0000280-1570713199:132822..132826Branchiostoma lanceolatumexon
Blg00038.0-exon-Sc0000280-1570713199:133635..133844Blg00038.0-exon-Sc0000280-1570713199:133635..133844Branchiostoma lanceolatumexon
Blg00038.0-exon-Sc0000280-1570713199:134158..134422Blg00038.0-exon-Sc0000280-1570713199:134158..134422Branchiostoma lanceolatumexon
Blg00038.0-exon-Sc0000280-1570713199:136295..136375Blg00038.0-exon-Sc0000280-1570713199:136295..136375Branchiostoma lanceolatumexon
Blg00038.0-exon-Sc0000280-1570713199:136684..136705Blg00038.0-exon-Sc0000280-1570713199:136684..136705Branchiostoma lanceolatumexon
Blg00038.0-exon-Sc0000280-1570713199:137204..137491Blg00038.0-exon-Sc0000280-1570713199:137204..137491Branchiostoma lanceolatumexon
Blg00038.0-exon-Sc0000280-1570713199:137891..137937Blg00038.0-exon-Sc0000280-1570713199:137891..137937Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00038.0Blg00038.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:132822..137937 +
Properties
Property NameValue
GeneIDBlg00038