Blg00033.5 (mRNA) - B. lanceolatum

Overview
NameBlg00033.5
Unique NameBlg00033.5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:184688..194518-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00033.5 ID=Blg00033.5|Name=Blg00033.5|organism=Branchiostoma lanceolatum|type=mRNA|length=9831bp|location=Sequence derived from alignment at Sc0000280:184688..194518- (Branchiostoma lanceolatum)
GGCTGTTACTAGTACTCACAATTTCAGCTCTCTTTAGACAGCTAATTGAT CATAAATTGCAAGAATATTTGGTACGAATCCGTGCGACACACGGGTACAA TCAACCGTAAATGTACTCTGTCAGACCATGGCAAAATATTCCGGCACAGA AATTCCTTACTTCCGGGTATGCGAAAATGCGTCATGCGTCGTCCTGTTGA CCGAGTGGACGATCAGGTCAGGTCAATGACCTGTGACCCAGGGGTCAAAA GAGGGCAGGTTTTACCATTTGCTTCATGATGAGGCACCGTCGTTTAGATG TTAGGACAACTTTAGTTTCCTGTTTAACTCTACCCTAGCAGTAACGTTAA CTGTGTGCTTTCGGCCAAGTGAATTCTACAAACTTTAAGGTAAGTTTGGA GCAAGTCAAGAACATTTATTGTTCCTTGTATCTATAATTTGTAGCTAATA AACCAACCTCCTTGCTTAAACGTTAGATCGACTGAAAGATAATAGAATCT GAGAACTAAGCTTTGTGCATATCGTGCGTGTGGTTTAACAGTAACATCAA TAATATTTTTACAGAAACGTTACCACGTCTATTGTCTACATATCGCCATA GATGAAAGACTCAAGGCATCAAACCTAGATTGAAGCATATGTGGACATTT TGATTTACAAATTTATGTTTGCACTAGATTAGTCATCACTTTTGTTGCAA ATTATGCACAGTGAGGCCATCAAAGATATGGAGTCTGATCCAGGTGCTCA AAGTGAAGCAGCTGTGCTGCCTGTGCTTACAGAACAACCAGGTATGTATC ATCTAAGGTAAAGGTAAAAGCATGAGTTGAGTTATAAAGTTTTGCAGATG TGTTTGTGTGTGTGTGTGAGTGAGTGTGTGTGTGAGTGTGTGTGTGTGTG AGTGTGTCTGTGTGTGTGTGTGAGTATGTGTGTGTGTGTGTGTGTGTATG AAGCTGGGTGTTATCCAAACACTCAAGTGTCTAGGAGACGGTTTTCGAAG TCAGCTGCAGATCCCATGTCCGGCTCTTCTAATCCTTCCTCAACCGAACT CAGTTAGTAATTGAGCCATAGGGACATTCCCTTTAACGTTTAAAGCAATC ACTGATTAAGAGAAAAAAATTTTCTCAGACAAATGATGAATTGTTATCAA TGACATGTTATAAACGACTTGCCTCAAATTCAAATATCAAATATGGTTTC TTTACCTTTACTATCTTCCACCATCATGTTTCCTTCTACAGGGCTTGAAA TACCATGTGCATGTGCACATCTCCAAAATAGGAGATGTGCACCTAATATT TGACTGCAGATATTTTTGTAGGCTATAGGGTAAAGATACTATTGTACACA AATATACAGAATATTCTAGAAATTTGAATATCAGAAAAAAAAGAAAAAAA CCTTTGTTGTACTTTATTTGATGTACTTCTTGTTTGAATTTTGAAGTTAA ATTCTATTGCTGTATTATAGAGTGAAGTTCTCAAGAGAGGTAGTAGGGTC GAAAATTATGTTTAGCCATACCTAGTATGGCTCAACATATTGTTTTTACT CAGGTTTCTTCTTCTTCTCCTGTGAAATCTTCAAATCGATTCATCTTTGT CATTTTTTGACCAAATGACCTGAAATTTGGTACAAAGGTAGTGTAGGCAA ATACCCACTGACTTTTTTTCTTCATTTTTTCGATATTGACCTTGAAAGTG ATTTTATTGAGGTTTTTCTGACCAAAAACGTACATTTTGGCCTCCTGTGC TCTGGAAATACATCCAAATGACCTGAAATTGGCTATGGGGGTACATTGAA CAAATATTCAGAGAACCCCATTCGCACTTTTGGCAAACATCACTTCAAAA TACAATTTTGCAGGGTATTTTGGGGAGAACATTGGGTATTTTCCTCATAT GACCTAAAGGTCAGTGACCCCGATTGCACCTGGCCTGGCTGTGAGCCTTG CGACCACCCGATTGGTCAATTGAGTGGTCAATTAAGTTATCTTGCATTTC TGGCGCAGGTGTGCTAGTATTCATACCAAATGTGGTATGGGAATGCGCAG GACATGTGCTTACATGGCTTTGTTCACTCTTTTTTCAACAAAGATACACA TCTCCAGTTCCTATGTAGTAAACCAAAATGATGCAAAATTCGGCATGTGT CTGCCTTGGTCATGTAGAAATGTTTGGCATACAGCCTTTCAAAACGATTT TTGAAATAAACAATTTTTTCGTTTCCTTATTTTCAACCCAAATGACTGTA TACTATTGAATCATGCATTCAAACAAAGGGGTGTCACATTTTTATATTTC ACCCATACTATCGCTGCAATATGTTGTTTTTGGTAATTTCCTTCTTCTCC TGTCAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCTAAAATC GGCAAACGCGGTACAAATGAGCCGATACCTGCCGGTGTAAAGGCGCAATA CCGCCAATATGTTTAAAACTGTTTTGAGTAACAAAAGAAGGCGGTCTCCA TTCATTTGACAGTTACGTTGATAGGAATGNATTTTTTAGCAGAAGTGTAT TTGTTAATCAATTAGTGGATATGGTTGTGGACTGGTCCATATTGTGTTGA GGTGCTACTGGAAGACTCAATTTTGGACTGGGGTGATTCATTTTTTTAGT GCAAGTATTTTAGAATGGTCCATTGTTATTTTGGGAGAGTCCATTTTTTG CATGGCGAGGAGTATGGCTAAACATGCTGTATTTGCTCGCAAATGTTGCC TTTCTAGTTGATATTGTTTTCCCGGTATGCCTAAACACCTCACCCGACCT CATCCGACCTCACCCGACCTCATCCAAGTCTAAAATGCAGTGTATACGGG ATAGTAACATTATTTGACGTTCTTGATACGTTGAATATGCAATTATGAAT GCTAAACAAGCAGCAAGCTCTAAGTATTTACCAGTTTTATAAGTTACTCC GCTCGTTTTTAAGATAGAAGATTTCTGGCCGCCATATTGGATCATGCCAC TGTTGGGGTCTACATGGGGAAGTTCTTCATACCTTTTTTATTTATTTTTG TCCGACAGGACGATAAGACGGTGGGTGCTAGTTACGTTTTCATCACAAAC TACTCATAGTGACTGTACACAATAACTGTACACAGTATCTGTACACAATA ACTGTACACAAAGTGTTTTTCAGCCTCGAATACACTCACGTAGTGTGTAT TCATTGCGCCGGCCGTCTTGACCTCCCATTACCTATAAAAACTGGTAAAT ACTTCAAGTTTGCTGCTTGTTTTGCATTTATAATTGCATATTTAACGTAT CCAGAACGTCAAATAATGTCCCTGCCCCGTATACACTGCATTTTAGACTC GGATGAGGTGGGGTGAGGTCGGATGAGGTCGGGTGAGGTGTTTAGGCATA CCCTTAGCTTGTTTTCCTGATACAGTATTCTACTTTATTTAATGCTGTGC ACCCGAAATTCTTTCTATGCACCTTTTTTAGGAAAAAGTGCACCAGTAAA CCTATTCCTAAAAATGAATTTCGAGCCCTGCTCTGTTTGCAGCACCAGGA ACTGCAGAGGGTCCGCTGCAGGTTAGGAACTTGGAGGCAGAAGACATTGA CTTTGTCGCTCGAATGCTGGTGGAGGCTTTCAGGGATAAGTTTGAATTTG CAGTTGGAAAGAGTCGGTAAGATTTCCTTAGAGTGCGTTCAGTTAAATAC CTCGGTTAAAGTGTTTATGACACCAAAATACAACATTTTCTTATTTTCTG TAATAGGAATAGTATCATTCAATGAATATAAACGTTAAAAACAAATACAC ACCCTTCTGATGTTATGAGAATTGAACCATAAGAAAACATACTTCCAGCT TTTGATTTTTCTTTGATCTCCCCACCAGGTAATTACATTAATCAGTGACT TTACTCTCCCGATGACGTCACAATGAACACGGCATCTGGTTCGGAACCTT GCACCATGACTTGTGAAAAACATTATTTGAAGAGCGAACAGTGTTTGATT ATCGTGATTACATTCAATTAACAAGACATTATGATATTTAGTTTGTTTGT TTCTCAAAAGAACGTTATTTCCGAGCCACAGAGCAAAGTTCCAAACTGGC TGCCATGTTCATTGTGACGTCATCGATAGAGAAGTCACCGATTAATATAA TTACCTGATGGGAAGAATCAAAAGCTGGAGGTATGATGTTTTGATGGTTC GATCTTCAATAACATCCGAAGGGTGTATATTTTGTGCAAATGTCTATGTT ATTATATGGTTATGTAATTTCAGGATTTTTATTTCTAGTATAATGTCATT GGTGTCTTATACACTTTAATTCTACTTGAGACTGGTGCAATAGTGGGTAT AGGTTGATATGATGGGCAGTCATCTTAAGCTGCTAAAAAAAAAAGAAAGT GGTCAGGTTTTTATGAATGAAATTATGAATGAAACACAATAATCTCAAGA ACACACACCGGTGAGAAATACGTTCAGGATCATAAGTTTGAATTTGCAGT TAAAAAGAGTCAGTAAGACTTTATCTGAGTGTATTGGGACCTCGAGCTCC CAGTGTCTTTGCAATTGTTTTTAATGTCTTTAAACACAGTTAACATTGAG CACTACAGCAAGTACTTAAGTCCACTGGTAGGTGATACTCTGGGCCGTGA TGTTTCAGTGTAAGGTTGAAGGACAAATGATCCTTAACCTGCTTATACCC CATACTACAGGATTGAAGCCACAATACAACAACAGGCCAGCTCACTTAGC CGTTCTCCCAATGTTTGGCACAGATATTATGTGGCATTGTACGAGGGAAA GTTGGCCGGTGCTATGTGCATTGTATTTTATGGAGACAGGTTAGTTTGAT TATTAGTATTACAATTTTTACTTCACCCTTACACACACTAAGGGACTAAA GTACTGTTTTTGTCTTGTCTGTGCATGTGTGTCTGTGTGAGTACATGTGT GTATATGCATGTGTATGAGTGAGTGTGTGTTTGTGTGTGTGTATGTGTGT GTGCAAGTGTGTGTGTCTGTGTGTGTTTGGATGTGGATGTGTGTCTGTGT CGCTCTGTGTGTGTGTTTGTGTGTATGCGTGTATGCGTGTGTGTGTGTTT GGATGTAGATGTGTGTCTGTGTCACTGTGTGTGTGTGTGTATGTTTATGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAGCATTC AAAAGGGGCTTGAAGGGTTGATTAGTACGGGTGATTTGAATTGCAACAGT ATCATAATACAATAATATCGCAATATCATAATCTCTATCATCATGACATC TTAGATTGCCTCTGTTATTATACTTTACAATTGATTTATTGGCATTGCTG TTTGTTTCTACAGTGCTGATGAGGGTTCCCAGTGCTGTGATTCCCAGCTG GGCTATTACGGTTCAACCAGGTATGGATGTTTGTAAATGTTGTTGTTGTT GCTAACCTTGTAGTGCCTAGTGGCACATAAGTCAGCAGGTTTCCTTGCTG TCTCAGTTGCAGGGGATATCTTGCTAGCCCTTCCCCTTAAACATTGCTTG AGGCCCCTCCTCAAAAACAGGACCCCCATTTTATGTCCCTTCCAAAAGAT GGGTGCAGCTCCAACCGAGATGTCCTGTCACAGAATTGAACCAGGGCCTA TTGGTTACCATTGTAATTGGGCATCCCCTCAAGACACCTCTTCAAACATG GGACCCCCATTTTATGTCTCTTCCGAAAGACGGGGGGTGTCTGCTTCAAA TTACTTGGACCAGAAGGCCCGGGTTCAAGCCCCGGGTAGGACACCTCTGG ACAAGAGGCACATTGAGTTATACCAAAGACTTTAAAAAATGCCATGGTAC ATACTTCTGAAACAGTATGGAAGTTAGACACACTCCACTGTCAGTGGACT AGCCCCCTGCTGCAGTGATTGCACCACAGTGTGGCCCAGGGTTATGAAAC GGAGATGGGCTCCGCCCTATACATCTTATGGTGTGGGAGGACTTTAACTA ACTTTCGAAAGACGGGTGCAGCCCCAACCGAGATGCCCTTCCCAGGATGT TACCTCATCACTTTGGTCCTTGATTCTGGTGCAAAGTTTTCTTACATCAT GAGGGCTAAAAATACATTTTTCTTTTTAGACAACCTGAACCAGCACTAGT ACACACTCAGGTACATTCAAAGTTGCCTGAACCAAACAAGTTTTACTCTC ACTGGACTGCACCTGTTTGCAATAAATTATTGGGCCAACTGTCCAAAGTT TTCGCCAATTTTCCCTTGTGGTCACACTGTTGTGTGGGTAAAATATGTGA CTGCTACAAACAAAATGACTGCCCCTGGGATGTCACATACAAGATTATCC CTTTATTGGAAATCGTAGTGTTTCAACTGAATTAAAAACAATTAATGTAC AATGACCGAGATTCATCAAAAAGAGATTTGCAATGACTACACCTACTGGT GCTGTTTGAATAAAATTTGACATTTCAGGCAAAAAATTGGCTCCCATTGG TGCTGATTGGCGGCAGATTGGAGATAATAAGCGCCCTGTTTGTGTCAGTT GGTGAATGTCTTTCACAAACAGTTGCAGCGTAGTGTGACCAACAGTGCTT TAGTGCAGGGCAAATAATTTTGTGTGTTTGTTTGATTGATTGTTTGTTTG AACCTTTGTTTATTCATGATAAGCTCAAATCGGCACGCAGGCCGCTTTTC ATTGAGGTCATGAGGGAAGAGGTACATGTAAGGGTCAGATACAATATAGC AGAGATACACAGTCATTTGAGTCCTAATAACCCTTTTTTTAACATATATC ATTACATACATATGATACAGCAATATACAATTGCTACAACATACAACATA TAGTAGGGCGAAAGCCGTTCGTTTTGTTCATTTCCGTTACTTCAAGAGTC TCTTAAAGGAAGTCAGATTCCGAGCCGTACGTGTGTCTGGCGGTAGGCTG TTCCAGACATTTGGTCCGTGGTGCCTGCTACCGATCTACCATAATGAGGA ATGTTTTCACAAACTGTAGGCTCTGGTGTGTACATTGCTGTTTGGACAAC TCTGACATGCGCAGAGGGGAGTGTTACATAGACCGCATCTGTGTGGACGC AGGCTATCGAGGAAAGGGCATCGGAAAAGCGATGCTGGACAAGGCCGAAT CTGAGGCTCGGGAACACGGATCCACGGTAGGCTGGACGGCAAGATGTTTG TTTGTTTGTTTATTTGTATTGTATACCTGATAAACAGGTTTGTAACACAC CAGGTTTGTACTGATCAGTATAAGCTGGATATCTTGACAGATTTATTTGA TCCTCTCACACCGGGATGGATCCTTACTCTTTTTGATAAGTGAGGTGGGT TCCTTTACATGCTGGAGGTCTGACTCTGCTAAGACACAGGACCTCCTTTT AAAGTTAGAGCTTTTGCACAGTAATCAGTCAATGGATATCAGGGTACTTG CTGTTAGCTCACTTGTCTGAATTTGAGCGACCTTGAATTTGCAATGTGTC TTGTCTCGGATAGTTCTTCTATCTCTTGGTAGGGTTCCAATGTCAATGAC ACCATGTTAGGATGCACTTTCTGTTTATTCACTTTGTCTCTCACAGACGT CCATGTAACTGTGAGGTCTTAGACCCTCAACTTAGAGGTCTGTCTATTAC GCATGCATGTTTGAGTTTATTATGTCACGTAGGGCTGTGTACCTAAACAA AAATTTAGGTACAGGTATGGTACAGGTACAGCAGTTTAGGTACAGGGCTG AACCTGTACATGCACAAGTTTGGTCAATTATCTATAAGTTAACCATGGAG CCAACTGTTTTTTTAGTGGTAAATTGTCATCTTTGTATGAAAATTTATGT ATTTCAATCTCAAAAGAAGTCTATTTGCAGGTTTTCTTCATTTTCATCTG TGAGGTTATCAAAATTGTCATATCTGTCAAGCGACCTACCTTTAGTCTAA AGAAGGGTGTCCACTCAAGTGTTTTAGTTTGTTTAGGTACAGGTAGAGCC GTACAGGTACATCAGATGTTCAGGTCTGGACCTGTACCTGAATAACTTTA CAGGTACAGGTATGGGTTTTAGGTACACAGCTCTAAATTGTCATTTTTAG TTCATATGCTAATGCTGCTAACTAGCACCACATGTTACACAACTGATTTT CATTCCAACTTTCTACCCAACTATAGCTGATGTCCCTGTGGGTGAAGCAG ACGAATCGTGCTGTTCATCTGTACGAGCGACAGGGCTACAGCATCAGCAT GAACTGCTGCTGGCCCTGCACATGGTTTGCCGTGGGAACTGCGGTGGGTA CAATTACAGTGTCACCTGTCCGCAGCTAGTCCCCAAGCATATGTAAGGAT CCAGCTCATTCCTTGTGTTTTATGCCTTTTTCTTGCAACATTTAGTAAAG ATTCGTCCTAGTTTAAGTCAAACTTTAACAGAGGCGTAAAACACTGAGGA GCCGGATCCTTACATCTGCTTGGAGATTCGTCTGTGGCGTCTTTACATTT GGGAGGTCGCTGGTTCAAACCCTGGCTGAGTCATACTGGACACTTTAGAA ACATTGCTTTCTTTGCTTAGCACTCAGCACTTATGGGAAAGAGTATGGGA GTTACACACACACAACTACTAGTGGACTAGAGCCCCCTGCTGTAGAGCTT GCATAACTATGTGACCCAGGGGCTTATGATAGAAATGCTGTATACACCAA AAGGTGTGGGATTGATATTGACTTTCACGTTTTAATTTGACACCACACAA CTTTTACTATTTGTTCTATCTGTGTTTGTAGTTACTCATTCTTTTTCTCT ACTGATTTATTTACAGCGCTGGTATCAGATGGAGAAACAGCTGTAGTGCT GAAGGCAAACCTAGCAGACTTCTCTGGAACTGCAGTTTTTTACTTGTGTC TTATTCAGGGAGTTAAGAAATCTAGAATTCTATGACTATTTTACTATTTT ATAAAATGATGAGATATGATGAGGATTCACAACATCTCTAATTATAACTG AAGCAGGTTTAATCATTTTAACATAGAAGTTATGCAAATAAGGAGGACAT TGTTGGCATGATTAATGAGCAAATGACATTACCCTTTGGTTTAAAACTCC TCATTTGCAGAAGAATACATTCCACAGACCCCTATGTTCAATGTAACAAA ATTTGTCACTTTATTTGCTTTACTAGGAAATTATGTAAATAAATAAGTAA GTCGCTTTATTTGCTTTATTCAGGAAAGTACATGTATGTAGATAAGTAGT GTTACAGGGTGTTAGATTTGTTATGGCTACAAACATTCTGTGTCAACTAT TGTGTATAATTTTATCTAGCATTACTGTAAAAGCAAGTGCAATTTCCACC TTAAACCTACAATCCCTGAATGCAGGTGTCATTCAATCCCTTGTCGGAAG GGGTAAGAATGAAATACAGGCACAACAACTGACGACAATGTTTTGACCTC ATGTTTTATTAAATGATATGTGTGGGTGTGTCTTTTACATTGAAAAATAT CCATCTTTGTACACAGTTCCCCCCCCCCCTCAATTATGGACCTATTCTGT GAAATTGAAATAAACGTGAGAAAGTTCAAAT

Coding sequence (CDS) from alignment at Sc0000280:184688..194518-

>Blg00033.5 ID=Blg00033.5|Name=Blg00033.5|organism=Branchiostoma lanceolatum|type=CDS|length=387bp|location=Sequence derived from alignment at Sc0000280:184688..194518- (Branchiostoma lanceolatum)
ATGTGCATTGTATTTTATGGAGACAGTGCTGATGAGGGTTCCCAGTGCTG
TGATTCCCAGCTGGGCTATTACGGTTCAACCAGGCTCTGGTGTGTACATT
GCTGTTTGGACAACTCTGACATGCGCAGAGGGGAGTGTTACATAGACCGC
ATCTGTGTGGACGCAGGCTATCGAGGAAAGGGCATCGGAAAAGCGATGCT
GGACAAGGCCGAATCTGAGGCTCGGGAACACGGATCCACGCTGATGTCCC
TGTGGGTGAAGCAGACGAATCGTGCTGTTCATCTGTACGAGCGACAGGGC
TACAGCATCAGCATGAACTGCTGCTGGCCCTGCACATGGTTTGCCGTGGG
AACTGCGCGCTGGTATCAGATGGAGAAACAGCTGTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00033.5Blg00033.5-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00033.5-exon-Sc0000280-1570713199:194115..194518Blg00033.5-exon-Sc0000280-1570713199:194115..194518Branchiostoma lanceolatumexon
Blg00033.5-exon-Sc0000280-1570713199:193728..193807Blg00033.5-exon-Sc0000280-1570713199:193728..193807Branchiostoma lanceolatumexon
Blg00033.5-exon-Sc0000280-1570713199:189430..189558Blg00033.5-exon-Sc0000280-1570713199:189430..189558Branchiostoma lanceolatumexon
Blg00033.5-exon-Sc0000280-1570713199:188849..188905Blg00033.5-exon-Sc0000280-1570713199:188849..188905Branchiostoma lanceolatumexon
Blg00033.5-exon-Sc0000280-1570713199:187093..187249Blg00033.5-exon-Sc0000280-1570713199:187093..187249Branchiostoma lanceolatumexon
Blg00033.5-exon-Sc0000280-1570713199:185976..186092Blg00033.5-exon-Sc0000280-1570713199:185976..186092Branchiostoma lanceolatumexon
Blg00033.5-exon-Sc0000280-1570713199:184688..185452Blg00033.5-exon-Sc0000280-1570713199:184688..185452Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:184688..194518 -
Properties
Property NameValue
GeneIDBlg00033