Blg00033.0 (mRNA) - B. lanceolatum

Overview
NameBlg00033.0
Unique NameBlg00033.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:184688..194280-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00033.0 ID=Blg00033.0|Name=Blg00033.0|organism=Branchiostoma lanceolatum|type=mRNA|length=9593bp|location=Sequence derived from alignment at Sc0000280:184688..194280- (Branchiostoma lanceolatum)
CAGGGGTCAAAAGAGGGCAGGTTTTACCATTTGCTTCATGATGAGGCACC GTCGTTTAGATGTTAGGACAACTTTAGTTTCCTGTTTAACTCTACCCTAG CAGTAACGTTAACTGTGTGCTTTCGGCCAAGTGAATTCTACAAACTTTAA GGTAAGTTTGGAGCAAGTCAAGAACATTTATTGTTCCTTGTATCTATAAT TTGTAGCTAATAAACCAACCTCCTTGCTTAAACGTTAGATCGACTGAAAG ATAATAGAATCTGAGAACTAAGCTTTGTGCATATCGTGCGTGTGGTTTAA CAGTAACATCAATAATATTTTTACAGAAACGTTACCACGTCTATTGTCTA CATATCGCCATAGATGAAAGACTCAAGGCATCAAACCTAGATTGAAGCAT ATGTGGACATTTTGATTTACAAATTTATGTTTGCACTAGATTAGTCATCA CTTTTGTTGCAAATTATGCACAGTGAGGCCATCAAAGATATGGAGTCTGA TCCAGGTGCTCAAAGTGAAGCAGCTGTGCTGCCTGTGCTTACAGAACAAC CAGGTATGTATCATCTAAGGTAAAGGTAAAAGCATGAGTTGAGTTATAAA GTTTTGCAGATGTGTTTGTGTGTGTGTGTGAGTGAGTGTGTGTGTGAGTG TGTGTGTGTGTGAGTGTGTCTGTGTGTGTGTGTGAGTATGTGTGTGTGTG TGTGTGTGTATGAAGCTGGGTGTTATCCAAACACTCAAGTGTCTAGGAGA CGGTTTTCGAAGTCAGCTGCAGATCCCATGTCCGGCTCTTCTAATCCTTC CTCAACCGAACTCAGTTAGTAATTGAGCCATAGGGACATTCCCTTTAACG TTTAAAGCAATCACTGATTAAGAGAAAAAAATTTTCTCAGACAAATGATG AATTGTTATCAATGACATGTTATAAACGACTTGCCTCAAATTCAAATATC AAATATGGTTTCTTTACCTTTACTATCTTCCACCATCATGTTTCCTTCTA CAGGGCTTGAAATACCATGTGCATGTGCACATCTCCAAAATAGGAGATGT GCACCTAATATTTGACTGCAGATATTTTTGTAGGCTATAGGGTAAAGATA CTATTGTACACAAATATACAGAATATTCTAGAAATTTGAATATCAGAAAA AAAAGAAAAAAACCTTTGTTGTACTTTATTTGATGTACTTCTTGTTTGAA TTTTGAAGTTAAATTCTATTGCTGTATTATAGAGTGAAGTTCTCAAGAGA GGTAGTAGGGTCGAAAATTATGTTTAGCCATACCTAGTATGGCTCAACAT ATTGTTTTTACTCAGGTTTCTTCTTCTTCTCCTGTGAAATCTTCAAATCG ATTCATCTTTGTCATTTTTTGACCAAATGACCTGAAATTTGGTACAAAGG TAGTGTAGGCAAATACCCACTGACTTTTTTTCTTCATTTTTTCGATATTG ACCTTGAAAGTGATTTTATTGAGGTTTTTCTGACCAAAAACGTACATTTT GGCCTCCTGTGCTCTGGAAATACATCCAAATGACCTGAAATTGGCTATGG GGGTACATTGAACAAATATTCAGAGAACCCCATTCGCACTTTTGGCAAAC ATCACTTCAAAATACAATTTTGCAGGGTATTTTGGGGAGAACATTGGGTA TTTTCCTCATATGACCTAAAGGTCAGTGACCCCGATTGCACCTGGCCTGG CTGTGAGCCTTGCGACCACCCGATTGGTCAATTGAGTGGTCAATTAAGTT ATCTTGCATTTCTGGCGCAGGTGTGCTAGTATTCATACCAAATGTGGTAT GGGAATGCGCAGGACATGTGCTTACATGGCTTTGTTCACTCTTTTTTCAA CAAAGATACACATCTCCAGTTCCTATGTAGTAAACCAAAATGATGCAAAA TTCGGCATGTGTCTGCCTTGGTCATGTAGAAATGTTTGGCATACAGCCTT TCAAAACGATTTTTGAAATAAACAATTTTTTCGTTTCCTTATTTTCAACC CAAATGACTGTATACTATTGAATCATGCATTCAAACAAAGGGGTGTCACA TTTTTATATTTCACCCATACTATCGCTGCAATATGTTGTTTTTGGTAATT TCCTTCTTCTCCTGTCAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NGCGCTAAAATCGGCAAACGCGGTACAAATGAGCCGATACCTGCCGGTGT AAAGGCGCAATACCGCCAATATGTTTAAAACTGTTTTGAGTAACAAAAGA AGGCGGTCTCCATTCATTTGACAGTTACGTTGATAGGAATGNATTTTTTA GCAGAAGTGTATTTGTTAATCAATTAGTGGATATGGTTGTGGACTGGTCC ATATTGTGTTGAGGTGCTACTGGAAGACTCAATTTTGGACTGGGGTGATT CATTTTTTTAGTGCAAGTATTTTAGAATGGTCCATTGTTATTTTGGGAGA GTCCATTTTTTGCATGGCGAGGAGTATGGCTAAACATGCTGTATTTGCTC GCAAATGTTGCCTTTCTAGTTGATATTGTTTTCCCGGTATGCCTAAACAC CTCACCCGACCTCATCCGACCTCACCCGACCTCATCCAAGTCTAAAATGC AGTGTATACGGGATAGTAACATTATTTGACGTTCTTGATACGTTGAATAT GCAATTATGAATGCTAAACAAGCAGCAAGCTCTAAGTATTTACCAGTTTT ATAAGTTACTCCGCTCGTTTTTAAGATAGAAGATTTCTGGCCGCCATATT GGATCATGCCACTGTTGGGGTCTACATGGGGAAGTTCTTCATACCTTTTT TATTTATTTTTGTCCGACAGGACGATAAGACGGTGGGTGCTAGTTACGTT TTCATCACAAACTACTCATAGTGACTGTACACAATAACTGTACACAGTAT CTGTACACAATAACTGTACACAAAGTGTTTTTCAGCCTCGAATACACTCA CGTAGTGTGTATTCATTGCGCCGGCCGTCTTGACCTCCCATTACCTATAA AAACTGGTAAATACTTCAAGTTTGCTGCTTGTTTTGCATTTATAATTGCA TATTTAACGTATCCAGAACGTCAAATAATGTCCCTGCCCCGTATACACTG CATTTTAGACTCGGATGAGGTGGGGTGAGGTCGGATGAGGTCGGGTGAGG TGTTTAGGCATACCCTTAGCTTGTTTTCCTGATACAGTATTCTACTTTAT TTAATGCTGTGCACCCGAAATTCTTTCTATGCACCTTTTTTAGGAAAAAG TGCACCAGTAAACCTATTCCTAAAAATGAATTTCGAGCCCTGCTCTGTTT GCAGCACCAGGAACTGCAGAGGGTCCGCTGCAGGTTAGGAACTTGGAGGC AGAAGACATTGACTTTGTCGCTCGAATGCTGGTGGAGGCTTTCAGGGATA AGTTTGAATTTGCAGTTGGAAAGAGTCGGTAAGATTTCCTTAGAGTGCGT TCAGTTAAATACCTCGGTTAAAGTGTTTATGACACCAAAATACAACATTT TCTTATTTTCTGTAATAGGAATAGTATCATTCAATGAATATAAACGTTAA AAACAAATACACACCCTTCTGATGTTATGAGAATTGAACCATAAGAAAAC ATACTTCCAGCTTTTGATTTTTCTTTGATCTCCCCACCAGGTAATTACAT TAATCAGTGACTTTACTCTCCCGATGACGTCACAATGAACACGGCATCTG GTTCGGAACCTTGCACCATGACTTGTGAAAAACATTATTTGAAGAGCGAA CAGTGTTTGATTATCGTGATTACATTCAATTAACAAGACATTATGATATT TAGTTTGTTTGTTTCTCAAAAGAACGTTATTTCCGAGCCACAGAGCAAAG TTCCAAACTGGCTGCCATGTTCATTGTGACGTCATCGATAGAGAAGTCAC CGATTAATATAATTACCTGATGGGAAGAATCAAAAGCTGGAGGTATGATG TTTTGATGGTTCGATCTTCAATAACATCCGAAGGGTGTATATTTTGTGCA AATGTCTATGTTATTATATGGTTATGTAATTTCAGGATTTTTATTTCTAG TATAATGTCATTGGTGTCTTATACACTTTAATTCTACTTGAGACTGGTGC AATAGTGGGTATAGGTTGATATGATGGGCAGTCATCTTAAGCTGCTAAAA AAAAAAGAAAGTGGTCAGGTTTTTATGAATGAAATTATGAATGAAACACA ATAATCTCAAGAACACACACCGGTGAGAAATACGTTCAGGATCATAAGTT TGAATTTGCAGTTAAAAAGAGTCAGTAAGACTTTATCTGAGTGTATTGGG ACCTCGAGCTCCCAGTGTCTTTGCAATTGTTTTTAATGTCTTTAAACACA GTTAACATTGAGCACTACAGCAAGTACTTAAGTCCACTGGTAGGTGATAC TCTGGGCCGTGATGTTTCAGTGTAAGGTTGAAGGACAAATGATCCTTAAC CTGCTTATACCCCATACTACAGGATTGAAGCCACAATACAACAACAGGCC AGCTCACTTAGCCGTTCTCCCAATGTTTGGCACAGATATTATGTGGCATT GTACGAGGGAAAGTTGGCCGGTGCTATGTGCATTGTATTTTATGGAGACA GGTTAGTTTGATTATTAGTATTACAATTTTTACTTCACCCTTACACACAC TAAGGGACTAAAGTACTGTTTTTGTCTTGTCTGTGCATGTGTGTCTGTGT GAGTACATGTGTGTATATGCATGTGTATGAGTGAGTGTGTGTTTGTGTGT GTGTATGTGTGTGTGCAAGTGTGTGTGTCTGTGTGTGTTTGGATGTGGAT GTGTGTCTGTGTCGCTCTGTGTGTGTGTTTGTGTGTATGCGTGTATGCGT GTGTGTGTGTTTGGATGTAGATGTGTGTCTGTGTCACTGTGTGTGTGTGT GTATGTTTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGACAGCATTCAAAAGGGGCTTGAAGGGTTGATTAGTACGGGTGATTTG AATTGCAACAGTATCATAATACAATAATATCGCAATATCATAATCTCTAT CATCATGACATCTTAGATTGCCTCTGTTATTATACTTTACAATTGATTTA TTGGCATTGCTGTTTGTTTCTACAGTGCTGATGAGGGTTCCCAGTGCTGT GATTCCCAGCTGGGCTATTACGGTTCAACCAGGTATGGATGTTTGTAAAT GTTGTTGTTGTTGCTAACCTTGTAGTGCCTAGTGGCACATAAGTCAGCAG GTTTCCTTGCTGTCTCAGTTGCAGGGGATATCTTGCTAGCCCTTCCCCTT AAACATTGCTTGAGGCCCCTCCTCAAAAACAGGACCCCCATTTTATGTCC CTTCCAAAAGATGGGTGCAGCTCCAACCGAGATGTCCTGTCACAGAATTG AACCAGGGCCTATTGGTTACCATTGTAATTGGGCATCCCCTCAAGACACC TCTTCAAACATGGGACCCCCATTTTATGTCTCTTCCGAAAGACGGGGGGT GTCTGCTTCAAATTACTTGGACCAGAAGGCCCGGGTTCAAGCCCCGGGTA GGACACCTCTGGACAAGAGGCACATTGAGTTATACCAAAGACTTTAAAAA ATGCCATGGTACATACTTCTGAAACAGTATGGAAGTTAGACACACTCCAC TGTCAGTGGACTAGCCCCCTGCTGCAGTGATTGCACCACAGTGTGGCCCA GGGTTATGAAACGGAGATGGGCTCCGCCCTATACATCTTATGGTGTGGGA GGACTTTAACTAACTTTCGAAAGACGGGTGCAGCCCCAACCGAGATGCCC TTCCCAGGATGTTACCTCATCACTTTGGTCCTTGATTCTGGTGCAAAGTT TTCTTACATCATGAGGGCTAAAAATACATTTTTCTTTTTAGACAACCTGA ACCAGCACTAGTACACACTCAGGTACATTCAAAGTTGCCTGAACCAAACA AGTTTTACTCTCACTGGACTGCACCTGTTTGCAATAAATTATTGGGCCAA CTGTCCAAAGTTTTCGCCAATTTTCCCTTGTGGTCACACTGTTGTGTGGG TAAAATATGTGACTGCTACAAACAAAATGACTGCCCCTGGGATGTCACAT ACAAGATTATCCCTTTATTGGAAATCGTAGTGTTTCAACTGAATTAAAAA CAATTAATGTACAATGACCGAGATTCATCAAAAAGAGATTTGCAATGACT ACACCTACTGGTGCTGTTTGAATAAAATTTGACATTTCAGGCAAAAAATT GGCTCCCATTGGTGCTGATTGGCGGCAGATTGGAGATAATAAGCGCCCTG TTTGTGTCAGTTGGTGAATGTCTTTCACAAACAGTTGCAGCGTAGTGTGA CCAACAGTGCTTTAGTGCAGGGCAAATAATTTTGTGTGTTTGTTTGATTG ATTGTTTGTTTGAACCTTTGTTTATTCATGATAAGCTCAAATCGGCACGC AGGCCGCTTTTCATTGAGGTCATGAGGGAAGAGGTACATGTAAGGGTCAG ATACAATATAGCAGAGATACACAGTCATTTGAGTCCTAATAACCCTTTTT TTAACATATATCATTACATACATATGATACAGCAATATACAATTGCTACA ACATACAACATATAGTAGGGCGAAAGCCGTTCGTTTTGTTCATTTCCGTT ACTTCAAGAGTCTCTTAAAGGAAGTCAGATTCCGAGCCGTACGTGTGTCT GGCGGTAGGCTGTTCCAGACATTTGGTCCGTGGTGCCTGCTACCGATCTA CCATAATGAGGAATGTTTTCACAAACTGTAGGCTCTGGTGTGTACATTGC TGTTTGGACAACTCTGACATGCGCAGAGGGGAGTGTTACATAGACCGCAT CTGTGTGGACGCAGGCTATCGAGGAAAGGGCATCGGAAAAGCGATGCTGG ACAAGGCCGAATCTGAGGCTCGGGAACACGGATCCACGGTAGGCTGGACG GCAAGATGTTTGTTTGTTTGTTTATTTGTATTGTATACCTGATAAACAGG TTTGTAACACACCAGGTTTGTACTGATCAGTATAAGCTGGATATCTTGAC AGATTTATTTGATCCTCTCACACCGGGATGGATCCTTACTCTTTTTGATA AGTGAGGTGGGTTCCTTTACATGCTGGAGGTCTGACTCTGCTAAGACACA GGACCTCCTTTTAAAGTTAGAGCTTTTGCACAGTAATCAGTCAATGGATA TCAGGGTACTTGCTGTTAGCTCACTTGTCTGAATTTGAGCGACCTTGAAT TTGCAATGTGTCTTGTCTCGGATAGTTCTTCTATCTCTTGGTAGGGTTCC AATGTCAATGACACCATGTTAGGATGCACTTTCTGTTTATTCACTTTGTC TCTCACAGACGTCCATGTAACTGTGAGGTCTTAGACCCTCAACTTAGAGG TCTGTCTATTACGCATGCATGTTTGAGTTTATTATGTCACGTAGGGCTGT GTACCTAAACAAAAATTTAGGTACAGGTATGGTACAGGTACAGCAGTTTA GGTACAGGGCTGAACCTGTACATGCACAAGTTTGGTCAATTATCTATAAG TTAACCATGGAGCCAACTGTTTTTTTAGTGGTAAATTGTCATCTTTGTAT GAAAATTTATGTATTTCAATCTCAAAAGAAGTCTATTTGCAGGTTTTCTT CATTTTCATCTGTGAGGTTATCAAAATTGTCATATCTGTCAAGCGACCTA CCTTTAGTCTAAAGAAGGGTGTCCACTCAAGTGTTTTAGTTTGTTTAGGT ACAGGTAGAGCCGTACAGGTACATCAGATGTTCAGGTCTGGACCTGTACC TGAATAACTTTACAGGTACAGGTATGGGTTTTAGGTACACAGCTCTAAAT TGTCATTTTTAGTTCATATGCTAATGCTGCTAACTAGCACCACATGTTAC ACAACTGATTTTCATTCCAACTTTCTACCCAACTATAGCTGATGTCCCTG TGGGTGAAGCAGACGAATCGTGCTGTTCATCTGTACGAGCGACAGGGCTA CAGCATCAGCATGAACTGCTGCTGGCCCTGCACATGGTTTGCCGTGGGAA CTGCGGTGGGTACAATTACAGTGTCACCTGTCCGCAGCTAGTCCCCAAGC ATATGTAAGGATCCAGCTCATTCCTTGTGTTTTATGCCTTTTTCTTGCAA CATTTAGTAAAGATTCGTCCTAGTTTAAGTCAAACTTTAACAGAGGCGTA AAACACTGAGGAGCCGGATCCTTACATCTGCTTGGAGATTCGTCTGTGGC GTCTTTACATTTGGGAGGTCGCTGGTTCAAACCCTGGCTGAGTCATACTG GACACTTTAGAAACATTGCTTTCTTTGCTTAGCACTCAGCACTTATGGGA AAGAGTATGGGAGTTACACACACACAACTACTAGTGGACTAGAGCCCCCT GCTGTAGAGCTTGCATAACTATGTGACCCAGGGGCTTATGATAGAAATGC TGTATACACCAAAAGGTGTGGGATTGATATTGACTTTCACGTTTTAATTT GACACCACACAACTTTTACTATTTGTTCTATCTGTGTTTGTAGTTACTCA TTCTTTTTCTCTACTGATTTATTTACAGCGCTGGTATCAGATGGAGAAAC AGCTGTAGTGCTGAAGGCAAACCTAGCAGACTTCTCTGGAACTGCAGTTT TTTACTTGTGTCTTATTCAGGGAGTTAAGAAATCTAGAATTCTATGACTA TTTTACTATTTTATAAAATGATGAGATATGATGAGGATTCACAACATCTC TAATTATAACTGAAGCAGGTTTAATCATTTTAACATAGAAGTTATGCAAA TAAGGAGGACATTGTTGGCATGATTAATGAGCAAATGACATTACCCTTTG GTTTAAAACTCCTCATTTGCAGAAGAATACATTCCACAGACCCCTATGTT CAATGTAACAAAATTTGTCACTTTATTTGCTTTACTAGGAAATTATGTAA ATAAATAAGTAAGTCGCTTTATTTGCTTTATTCAGGAAAGTACATGTATG TAGATAAGTAGTGTTACAGGGTGTTAGATTTGTTATGGCTACAAACATTC TGTGTCAACTATTGTGTATAATTTTATCTAGCATTACTGTAAAAGCAAGT GCAATTTCCACCTTAAACCTACAATCCCTGAATGCAGGTGTCATTCAATC CCTTGTCGGAAGGGGTAAGAATGAAATACAGGCACAACAACTGACGACAA TGTTTTGACCTCATGTTTTATTAAATGATATGTGTGGGTGTGTCTTTTAC ATTGAAAAATATCCATCTTTGTACACAGTTCCCCCCCCCCCTCAATTATG GACCTATTCTGTGAAATTGAAATAAACGTGAGAAAGTTCAAAT

Coding sequence (CDS) from alignment at Sc0000280:184688..194280-

>Blg00033.0 ID=Blg00033.0|Name=Blg00033.0|organism=Branchiostoma lanceolatum|type=CDS|length=702bp|location=Sequence derived from alignment at Sc0000280:184688..194280- (Branchiostoma lanceolatum)
ATGCACAGTGAGGCCATCAAAGATATGGAGTCTGATCCAGGTGCTCAAAG
TGAAGCAGCTGTGCTGCCTGTGCTTACAGAACAACCAGCACCAGGAACTG
CAGAGGGTCCGCTGCAGGTTAGGAACTTGGAGGCAGAAGACATTGACTTT
GTCGCTCGAATGCTGGTGGAGGCTTTCAGGGATAAGTTTGAATTTGCAGT
TGGAAAGAGTCGGATTGAAGCCACAATACAACAACAGGCCAGCTCACTTA
GCCGTTCTCCCAATGTTTGGCACAGATATTATGTGGCATTGTACGAGGGA
AAGTTGGCCGGTGCTATGTGCATTGTATTTTATGGAGACAGTGCTGATGA
GGGTTCCCAGTGCTGTGATTCCCAGCTGGGCTATTACGGTTCAACCAGGC
TCTGGTGTGTACATTGCTGTTTGGACAACTCTGACATGCGCAGAGGGGAG
TGTTACATAGACCGCATCTGTGTGGACGCAGGCTATCGAGGAAAGGGCAT
CGGAAAAGCGATGCTGGACAAGGCCGAATCTGAGGCTCGGGAACACGGAT
CCACGCTGATGTCCCTGTGGGTGAAGCAGACGAATCGTGCTGTTCATCTG
TACGAGCGACAGGGCTACAGCATCAGCATGAACTGCTGCTGGCCCTGCAC
ATGGTTTGCCGTGGGAACTGCGCGCTGGTATCAGATGGAGAAACAGCTGT
AG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00033.0-exon-Sc0000280-1570713199:194130..194280Blg00033.0-exon-Sc0000280-1570713199:194130..194280Branchiostoma lanceolatumexon
Blg00033.0-exon-Sc0000280-1570713199:193728..193841Blg00033.0-exon-Sc0000280-1570713199:193728..193841Branchiostoma lanceolatumexon
Blg00033.0-exon-Sc0000280-1570713199:190603..190726Blg00033.0-exon-Sc0000280-1570713199:190603..190726Branchiostoma lanceolatumexon
Blg00033.0-exon-Sc0000280-1570713199:189430..189558Blg00033.0-exon-Sc0000280-1570713199:189430..189558Branchiostoma lanceolatumexon
Blg00033.0-exon-Sc0000280-1570713199:188849..188905Blg00033.0-exon-Sc0000280-1570713199:188849..188905Branchiostoma lanceolatumexon
Blg00033.0-exon-Sc0000280-1570713199:187093..187249Blg00033.0-exon-Sc0000280-1570713199:187093..187249Branchiostoma lanceolatumexon
Blg00033.0-exon-Sc0000280-1570713199:185976..186092Blg00033.0-exon-Sc0000280-1570713199:185976..186092Branchiostoma lanceolatumexon
Blg00033.0-exon-Sc0000280-1570713199:184688..185452Blg00033.0-exon-Sc0000280-1570713199:184688..185452Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00033.0Blg00033.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:184688..194280 -
Properties
Property NameValue
GeneIDBlg00033