Blg00027.5 (mRNA) - B. lanceolatum

Overview
NameBlg00027.5
Unique NameBlg00027.5
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:206266..211984-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00027.5 ID=Blg00027.5|Name=Blg00027.5|organism=Branchiostoma lanceolatum|type=mRNA|length=5719bp|location=Sequence derived from alignment at Sc0000280:206266..211984- (Branchiostoma lanceolatum)
AAAATACATTGCATTTTTTATTTCCTATATTTGCAGCACCAGGAACTGAG CCGGGCAGTCCGCTGCAGGTCAGGAACATGGAGGCAGAAGACATCGAATT TGTCTCTCGAATGTTGGTGGACGCTTTCAGTGATAAGTTTGAACACGCGG TTGGCAAGAGTCGGTAAGATTTCCGTAAAGTATATTCAGTTTCATGCGTT GGCTAGAGCCCTCTCCATTAAATATCTTCTAACCCTTTCTCATTTCTCAG TGGCTTTTTGAAAGCACAAGCTCATTAGTATGTTTCACAAATGCCTCAGC TATGATTAAGTGAAATGCAAATGAGCACCTCTATATATCATAACAACACA CACGCCAATAATGTCACATATGAAAAATGTCGTTCTGTAGGATGGAAGGT GCGGTCCAACAGACAGTCGCTTCGCTGGGCAGGTCCCAAGACGTCTGGCA CAGATATCGCGTCGCCGTGTACGAGGGCAGGCCAGCAGGCGCCATGGCCT TCAAATTTCATGGAGACAGGTCAGTTTATAGGACGTATGTTGGAAAGCTA AAAGAAATACATGTCTTGGCTAGCGGCCTCGTACTATATATAAATCACAT ATTGCACAGGTATACACAATTACACATATCGAAGCATTTTAACCTTGATT GTGGGCATGTTATAAGTTCTGTGAAGAACCAAAGCTTAGGATGCCGCTCC GTTTCCTTGGTTTCCTGCATGTTGCTCTGATTCTGGCTGGAATCTAAACC ACTAGAATCTAAATTCCTTTATCTGCTGCAGCGCCATGGGGGATTTCAGC TGCGGGGAGGCGTGCTCATTTCTTGGATGTGGCACGTGTGGGTATGTATC TTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTGTATGAACAGTAAACCAT CTTGTTTTGCAATGCAGGAGTTTTGTACTTGGATTTTTATCGTATACGCC TTGCTGTTCATGGAATAAGACAACGGCTGAACGATTAAATATGTTCGTAT TGCATTTCTACATTTAGTGCACGGTGATTCGGACTATGAGATTAGTCCAT TGTCACAGTTTACTGACGTTAGGGCTCCGTCATATGCATACTTGTGCGTA TATTTAAGTGCATTACCAGTTGCACATTAACATTTTTTTTTGGTTTAAGT AAGGTTTGCGGGAAAAAGTTGTTTTCTGCTTTGACTCACCGTTGTGCAGC CTATAGCTAGTGATTGAACCTAAGAAATCACTTATTCGGCTGCAAACTTA ACATAAACCCAAAAACATGTTAATACGCAACCAATGCGGACTTGTATATA CGCACAGGTGTGACAGGGGCTTTATGGCGGGTTGTTTCCATGATGTCTTT TAAACGCTTACAGGCTCATCTGCATGGGCGCTGCCTTGGAAAACGACAAC ATTCCTGTGGGGCAGTGTTACCTGGACCACATCGGCGTGGACGCGAGCTT TCGCGGGAAGGGCATCGGGAAGGTGATGCTGGATAGGGCGGACTATGAGG CCAGGCAACATGGGTGCACAGTACGTAGGCTGAATAGCCAATAACAGAAA CATCTTTTGAAATAATCTATGCTTGTGTTTAGTGTAACGTCAAATGACAG TCACAGTAACTGGATAGAATTTGAAAACAGTCAGACGTTTCAGACAGCAT CCGCTGTCTTTCGTCAGTGATTAAAGGGGGGTAACTGGAATAAGCAGGTT TTAAACCAAAACTCTATAGATATGTTGATCACGTGAAGACAATTTTAAGT ATCACGTTGTTTAAGGTTTGTTTTAACATAAAACACTGGGATATTGTACA TCTAATACAGAAATGTCTACATCCATATTAAAAGATTAATGACAGAAAAA TTACCATGCTACAAAAGAAAAAGCATACTTTATGCATTTTTGTCTGACAC CAAATTTTGCTGTTACAGGGTATGTCGGACAACCCGGCACCATGTCAATA GGACTGTTTCTAGTCATTTTGCAGTCAAGAATACGCCTAACTCTAACCCT AACCTAATTCTAACTCAGGCCTAACCCTAATCCTTACTCTAACCATAACT CGAGTCGTCCTGGACCTGGTGCCGAATCGTCCTGATTGGCTATGTGCCGA ATAGGCCGATTCTGACAGTCTATGACAATTAGCAGTTCAACCAATGATAG CATGGCAAATGGCATTCAACCAATGAGACAGCGGTTGCATGTCGGTCAAT ATTTGAATTTTCATGTTTTTAGTTTGCATTTCTACGTTGTGATGAAGGTA AAATAAATGATAATTTAACGGTTGACAGTGGCAAACGTGCTAGATGTTGC ACATCGGCAACCAAATCTGCAGTGTGTTTTTTGGCACACAGTTTGACAGA TTAGCCGAATAGGCTCGGTGGGCGTCACTCCACCGTCCGGAAAGGTAGTG TAAAGTGCCTTTCCCAAGGGCACAACGTCGGGGCATGGTGAGTATCGAAC TCGGGACCTATTGATTCCGAGTTCAACGCTCTAACCGTTACGCCACGCCG ACGTCACTAGCATTGTGATGAAGGTGGACCGGACTATGAGATCTGTTTAT TGACCTGATACCGTCACATTGTCTCAAAGAAGTTTTAATTGGTATTTCAA ACTTAATGTGGTTGGTGCTCCTTCTTTTTCTGGAATCCGTGAATGAACGA ATGAATGAATGAATGAATGAATGAAAACTTTATTATCGTGTCTTGCGACA TTTTGCGCCCAGCCCATGCGGGCTTTTAAGACACCGTATATCTTACATTA AATGCATAAAGAAAAGATCAGGAGTACATTGATGTCAAACGTTCTCTTTT CTTACAACCACAGGCGATTTTCCTGTGGGTGAAGAAGGGCAACCGTGCTG TTCACCTGTACGAACGTCAGGGCTACGTCATCACCCATACGTTCGGCGGC TGGTTCAAGCGATGTGCGACGGGCTCCAGAGTGAGTCTGATTCTCACTGT AGCGTAACATCTTCCATCTTCTTACTTCACTCTTACGTGTTGTTTTTCTG TTTGGGTGACTGGTTGTCTTTGTCTCTCTCTCTATCTCTCTCTCTCTGCA TTCCTCTCCTTACGATCGGATGTCACCCAGACTATCTCTCACTCACTCAC TCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCGCTC GCTCACCCACTCACTCACTCACTCAGTCACTCACTGCCATGTATCCTCCG TATTATGCTTATTTCTATACATGTGAAGCCAGTGTCTTCGGTGCCTTGTA TGTGCTTATAGATATATCTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTG TGTGTGTGTGCGTGTGTGCTTGTGTGTGTTAGAGAGTGTGTGTGTGTGTG CGTGCGTGCGAGTGTGTGGTCTATTTTTGTGTGCGCGTGTGTTTGCATGT GCGATTTGTGTTTGTCCATGTGTGCTATGCTGTTATTCCACTTTTGAAAT GTTCTGCCCAAACTGCAGGACTGGCACAACATGGAGAAGCAACTGTAACG CCCCGGAAATGACGTCACAACAACGTCTCAAGTTTCCATCTTGTCACAGA GATGTGATGACCACAAGGCTGATACTAAAGGAAGGAAGAAACAGTTCCGT CATGCATGCACGCATATATACCAACATTCCCTGAGTGACGTGTTCTTTCT ACAAATTAACAATCTATACAGCCTTATCTTCTAAACGTGCTTAGGGCCAT GTCACACTTGTGCGTATATTCAAGTGTGCGTGAGTTGCGCAGTAACATTT TTTTGGTTTAAGTAAGGCGAAAAAGTTGTTTTCTACTTCGACCCACCGTT GTGCAGCCTAGTCATCGAACCTAAGAAATCACTTATTCGGTTGCAAACTT AACCTAAACCAAAAACACGTTAATACGCAACTCATGCGGACTTGTGGACA AGTGTGACAGGGGCTTTATGTTTAAGTCCGTATGAGTTCCGTATCAACAT TTTTTTGGCTTAGGTAAACAAAAGTTTTTTCACCCACCGTTTTGCAGCCT GGTTTAATATAGAACCGGAAAATACTTTTTCGGCCGCAAACTATACCTCG CACAAAAAATGTGCGAAATGCATACGGCCAGAATTATACGCACAAATATG AACGGGCCCTTTGATAGGCCATGTATTTAGATATCAGTCACTTTTCAATG AAGGCTTTCAAGTAGAGATGATAAGTAAAACCAGACACTATCATGGTACA AACTGATTCCACTTGTGTTCACCTTTTTGTTTGCAGTTGAAAAAGTCCCT CGACTTTCAGAATGAATTTGTGAACTTGTTTTGTGTCAAAATAAACTGAA CTATTCTATCAACAGTCTCCCTGGTTAGAATTTACCCGGGATCCGGTAAC AAATAGGCGCCGTAAGCTAATCGTGAAAACACCGAGAGGTACCCCCAGTT ATGCTTCGATCCCAATTGCAATCCGGGGCCCGGCCGGGCTGTTTGCGAAA ACGGAAAAAAAAATGCATATCAAGAAAGTATACATTATATGGTTAGGAGT GATTTTTTTCGTTTTGTATCTTTTGTTGTCTTTTATTTCATACTTTCTGT TCCAACTAGCTGCCCGGCCGGGCCCCGGATCGGAAATGGGACCAAACCAT AACCGGCAGTCCACCGGGACTACAGCCCCTACGTACGAGCACGGGTGAAA AGTTGACCGAAGTATTACAGAGGCTCCGAGTAGCATATCACGATGCCCTT AAAATCTCGTTGTCCCAACCCAGGTATACCAGCAACAGTCTTTGTTTTGT ACAGCTTGGTGTTGACCGGGAGGCGAAAGTTGACGCATTGTTTCGTCGCC TCTTGGTGTCGGGAACGACGTCATCAAACGTCTGCTATATTGAGCAGCAT TCTCTTCGAATAGGTCCTGGTATTAATACTGTCACGTTCGCTGTAAGAGG CCGCTTACTTTGAATGTCGCTTTTATGTAGTCATTGTAAATACCTGTAGT TTTTTTTAGATGTTTGTATGTGTTGATGTATGGGTCTGAGGAAAACAATA AATATGTAAAATGAATTCATCCAAAACTCTGTGAATTGGTATGCTATACA TAGTAAGGTGAAGTCTATTCTAAGATGGTTCAATTGAAGACGGCATCAAG ACAAGGTTGTATGCTGATAAGTTAATTGTGTTGTTTTAGCACAGGCTCTA ATGTTGTCTCGTAGGGTGGGAGGGCAGAAACTAAGTGCTGGAAAGTTCGA CACGAAGGCCTCCTTTCCTGTACTACACCCAATCCCATAATAGTCTACCT CATTTCAGTCAGTTAATGTAGGGGCTCTGCCCCCTCCACTCAAAGAGGAG GAAATCTTAATTATCATGTAATTACAAGAAATATTCAAATATTCATAACT TTGATTATAGTTAGACATTTCACTAATTTTAGGAGCCTCTAAATGTAGAA CATGTAACTGCTATGTTTTGCACTTGACGAAAACTATATATGCATGCTAG ATATACATAAGAATCTTGACTATTTTAATTGGTACCTGTGACTTATTGAC AACAATAGATGGGACATTAGAACGTTCTTTTAAATGAATAAATGAAGCAC TTTATTGTAAACCCATGCTTCGAATGGCTAGGCGCAGGTCGTCTACGTAT GAGTTAACAAACGTGTAAAAAACATATATGTAGAAAAGTAATATGTAAAG GCAAGAAATACACCAGTTAAACCATAGGCGGTGGGCCACCGAAATTTTGT TGAAAATTTTTTAGTCTAG

Coding sequence (CDS) from alignment at Sc0000280:206266..211984-

>Blg00027.5 ID=Blg00027.5|Name=Blg00027.5|organism=Branchiostoma lanceolatum|type=CDS|length=579bp|location=Sequence derived from alignment at Sc0000280:206266..211984- (Branchiostoma lanceolatum)
ATGGAGGCAGAAGACATCGAATTTGTCTCTCGAATGTTGGTGGACGCTTT
CAGTGATAAGTTTGAACACGCGGTTGGCAAGAGTCGGATGGAAGGTGCGG
TCCAACAGACAGTCGCTTCGCTGGGCAGGTCCCAAGACGTCTGGCACAGA
TATCGCGTCGCCGTGTACGAGGGCAGGCCAGCAGGCGCCATGGCCTTCAA
ATTTCATGGAGACAGCGCCATGGGGGATTTCAGCTGCGGGGAGGCGTGCT
CATTTCTTGGATGTGGCACGTGTGGGCTCATCTGCATGGGCGCTGCCTTG
GAAAACGACAACATTCCTGTGGGGCAGTGTTACCTGGACCACATCGGCGT
GGACGCGAGCTTTCGCGGGAAGGGCATCGGGAAGGTGATGCTGGATAGGG
CGGACTATGAGGCCAGGCAACATGGGTGCACAGCGATTTTCCTGTGGGTG
AAGAAGGGCAACCGTGCTGTTCACCTGTACGAACGTCAGGGCTACGTCAT
CACCCATACGTTCGGCGGCTGGTTCAAGCGATGTGCGACGGGCTCCAGAG
ACTGGCACAACATGGAGAAGCAACTGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00027.5Blg00027.5-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00027.5-exon-Sc0000280-1570713199:211822..211984Blg00027.5-exon-Sc0000280-1570713199:211822..211984Branchiostoma lanceolatumexon
Blg00027.5-exon-Sc0000280-1570713199:211466..211594Blg00027.5-exon-Sc0000280-1570713199:211466..211594Branchiostoma lanceolatumexon
Blg00027.5-exon-Sc0000280-1570713199:211144..211203Blg00027.5-exon-Sc0000280-1570713199:211144..211203Branchiostoma lanceolatumexon
Blg00027.5-exon-Sc0000280-1570713199:210465..210621Blg00027.5-exon-Sc0000280-1570713199:210465..210621Branchiostoma lanceolatumexon
Blg00027.5-exon-Sc0000280-1570713199:209055..209171Blg00027.5-exon-Sc0000280-1570713199:209055..209171Branchiostoma lanceolatumexon
Blg00027.5-exon-Sc0000280-1570713199:206266..208516Blg00027.5-exon-Sc0000280-1570713199:206266..208516Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:206266..211984 -
Properties
Property NameValue
GeneIDBlg00027