Blg00027.2 (mRNA) - B. lanceolatum

Overview
NameBlg00027.2
Unique NameBlg00027.2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:208949..214129-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00027.2 ID=Blg00027.2|Name=Blg00027.2|organism=Branchiostoma lanceolatum|type=mRNA|length=5181bp|location=Sequence derived from alignment at Sc0000280:208949..214129- (Branchiostoma lanceolatum)
TGGAGCCATTGTATCGGTTGCTAGGGGACGCGCTAGCCACTGCGCAAGTC CGGAAGTAAAGACCCAGTGTCACCGTTCGTGCGGACGCCAGAAGCACTCG GCGCAAATTATTCGCTCAAGAAACGTACAAGTTTGACGGTATGTCGTCTT AAAATGCTCTAATTGTCTTGCAGTTTTGTTAGAATCTGACTTAAGATAGC TGTCGTCGGTGAACACAGTTCCTGTTTTCCATAACGATGTGTATATTTGT TGTTTTGACCAACAACAGGTTGTTTTGGCTCGTTATACCTCGGTACGCGG TATCAAATTGGCACAATACAAATTTAAAGCAGCAGCTGGACAGATCATTG TAAACGGTCAGACGTTTCAGATAGCATCCAATTTCTTTCGCAGTGACCGA GGAAAATCCAACAGGTGGTATTCTATAGTATAGAGCAAAAACTATGAGTG ACTTAATATTGTACTAAATCGTTACTCTCCAAGCAGAGGTTGGTCTCTGG CTGGTTTTTGATGTGTTTCTAGGCGTTTTTGTCGGGCTTTCTATTTTGTC CTGTTTTCTCTATGTCACCAGCCCACATAAAGAAAACGTGACCAAGTAGA AAGATCGACAAAAACGCCTAAAACACGTCAAAACCTCTGCTTGGAGAGTA CTGAATCGCCAATAGAAAACACACTGTAAGGTACAGGTGTAATACGATCA CGAAAGTAGGTCATGTAAACAAGATGGCTAATGGAAATTATTTAATGCTA AAAATGATATTGGTTTAATTCTGTGCCTAAATCTGCATTGAATTTTATTT GGCAAAGATTCCAGTCTCAGCCATGTACTAAAATGTTGTTGTCCTTGTTT AAAGTCTATTGTTTCGCTAGACATGGTCTCTTGGTGCTGGGTTTCACTTG GTTCAGTTACAAAATGCAAAGTCATTGTCTCTGGTGTTTACGTATTGGTG ACTTGTGCTTGTGTTTAGCTGGAAGTGTTTCTAGGAGAGCGCGTCGAGTC TGTGCGTACTCTCAATGTACGTAAGGATTTCCACGGCCACGGGTACCAGG TGTGACGCCAAATTTCTGCCCCGCCAGATTTCTGCTTCGTATGGTTGGGG ATTGGTTTAGAGCTAGGGCTAGCAATTAGGATTAGGGTCGAGTTAGGGTT AGGGTTAGCCTCCACAGAGCGACCCCTCCTTCCAAAGTTCTAACAGACTT CTGCTAGGAATATTAGCCCACTCGTAGATTCGAGTCCGCACGTGCAGTGT CAAAGGTGAAGGCCCCTGGCTTGTAAACAGTTCTTGTTTCGATATTGTCT TTTGTTTGCAAAGCACTGCCCAGACGATTTTGGTTACGTCTAAAGGGCCT TCACCTTTGATACTGCGCATGCCTACTTGAATCTACAAGTGGGCTTATTT ACCACGCAACAAGAGTATGATCCACTTCTTTCACTTCAGGTATACTGAAA AACCCCTAGCAGTGTTGGGGCATTTATTTGGCAGGGGACTGAATGACTGC ATTACTATTACAGTAACCAATGTATCAAAAGCATTAGACAGGATACTGAA CATAAAGATTCCCCTTTGGTTCAAATGCACAGGACAGAAGAGTCGAGACA TCTCCAGAGATATCATGGCGGTTGAACCTGTAGTTGCTCAGCCTGGAATG GCAGAACTGCCCTCTGAAACAGGTTTGTATCAGTATCTAATATCAAGTCT CATAGTTCTGCATGTTCTGCATGCAAGCCACACTTTGAAAAATAATGGTG AATTATTAAAAAAGATGTGCTAGATGCAGCGTTAGCAATCCCCAAAGATG GCACACGTCGGATATCCAGGTGTTCAAAGTCCTAGATAACACGGTCTTAG GATAAAAGAAAATTTGGAGCTAAAGCCACCCTCTCATTGGACCCGGGGCA CGCTGGCGGCGTCGCTGCATCCTAAACTGGATTTGTGTTACCCTTGACTT TATAATGGGAATATCGTTCAAAACGTACAAGTATGACCAAAAAGACAACA AAACACACATTAGCTTAAAAATATTCGTTTTTTGTCGATGAAATTCGATC GGCCGCAGCGACGCCGCCAGCGTGCAACGGGTTCAGTGAGAGGGGGGCTT AAGAACTCCGGCGGTATTAAGTGATTTGTGATTACCACCCTGATGAAAAT ACATTGCATTTTTTATTTCCTATATTTGCAGCACCAGGAACTGAGCCGGG CAGTCCGCTGCAGGTCAGGAACATGGAGGCAGAAGACATCGAATTTGTCT CTCGAATGTTGGTGGACGCTTTCAGTGATAAGTTTGAACACGCGGTTGGC AAGAGTCGGTAAGATTTCCGTAAAGTATATTCAGTTTCATGCGTTGGCTA GAGCCCTCTCCATTAAATATCTTCTAACCCTTTCTCATTTCTCAGTGGCT TTTTGAAAGCACAAGCTCATTAGTATGTTTCACAAATGCCTCAGCTATGA TTAAGTGAAATGCAAATGAGCACCTCTATATATCATAACAACACACACGC CAATAATGTCACATATGAAAAATGTCGTTCTGTAGGATGGAAGGTGCGGT CCAACAGACAGTCGCTTCGCTGGGCAGGTCCCAAGACGTCTGGCACAGAT ATCGCGTCGCCGTGTACGAGGGCAGGCCAGCAGGCGCCATGGCCTTCAAA TTTCATGGAGACAGGTCAGTTTATAGGACGTATGTTGGAAAGCTAAAAGA AATACATGTCTTGGCTAGCGGCCTCGTACTATATATAAATCACATATTGC ACAGGTATACACAATTACACATATCGAAGCATTTTAACCTTGATTGTGGG CATGTTATAAGTTCTGTGAAGAACCAAAGCTTAGGATGCCGCTCCGTTTC CTTGGTTTCCTGCATGTTGCTCTGATTCTGGCTGGAATCTAAACCACTAG AATCTAAATTCCTTTATCTGCTGCAGCGCCATGGGGGATTTCAGCTGCGG GGAGGCGTGCTCATTTCTTGGATGTGGCACGTGTGGGTATGTATCTTGTT TGTTTGTTTGTTTGTTTGTTTGTTTGTGTATGAACAGTAAACCATCTTGT TTTGCAATGCAGGAGTTTTGTACTTGGATTTTTATCGTATACGCCTTGCT GTTCATGGAATAAGACAACGGCTGAACGATTAAATATGTTCGTATTGCAT TTCTACATTTAGTGCACGGTGATTCGGACTATGAGATTAGTCCATTGTCA CAGTTTACTGACGTTAGGGCTCCGTCATATGCATACTTGTGCGTATATTT AAGTGCATTACCAGTTGCACATTAACATTTTTTTTTGGTTTAAGTAAGGT TTGCGGGAAAAAGTTGTTTTCTGCTTTGACTCACCGTTGTGCAGCCTATA GCTAGTGATTGAACCTAAGAAATCACTTATTCGGCTGCAAACTTAACATA AACCCAAAAACATGTTAATACGCAACCAATGCGGACTTGTATATACGCAC AGGTGTGACAGGGGCTTTATGGCGGGTTGTTTCCATGATGTCTTTTAAAC GCTTACAGGCTCATCTGCATGGGCGCTGCCTTGGAAAACGACAACATTCC TGTGGGGCAGTGTTACCTGGACCACATCGGCGTGGACGCGAGCTTTCGCG GGAAGGGCATCGGGAAGGTGATGCTGGATAGGGCGGACTATGAGGCCAGG CAACATGGGTGCACAGTACGTAGGCTGAATAGCCAATAACAGAAACATCT TTTGAAATAATCTATGCTTGTGTTTAGTGTAACGTCAAATGACAGTCACA GTAACTGGATAGAATTTGAAAACAGTCAGACGTTTCAGACAGCATCCGCT GTCTTTCGTCAGTGATTAAAGGGGGGTAACTGGAATAAGCAGGTTTTAAA CCAAAACTCTATAGATATGTTGATCACGTGAAGACAATTTTAAGTATCAC GTTGTTTAAGGTTTGTTTTAACATAAAACACTGGGATATTGTACATCTAA TACAGAAATGTCTACATCCATATTAAAAGATTAATGACAGAAAAATTACC ATGCTACAAAAGAAAAAGCATACTTTATGCATTTTTGTCTGACACCAAAT TTTGCTGTTACAGGGTATGTCGGACAACCCGGCACCATGTCAATAGGACT GTTTCTAGTCATTTTGCAGTCAAGAATACGCCTAACTCTAACCCTAACCT AATTCTAACTCAGGCCTAACCCTAATCCTTACTCTAACCATAACTCGAGT CGTCCTGGACCTGGTGCCGAATCGTCCTGATTGGCTATGTGCCGAATAGG CCGATTCTGACAGTCTATGACAATTAGCAGTTCAACCAATGATAGCATGG CAAATGGCATTCAACCAATGAGACAGCGGTTGCATGTCGGTCAATATTTG AATTTTCATGTTTTTAGTTTGCATTTCTACGTTGTGATGAAGGTAAAATA AATGATAATTTAACGGTTGACAGTGGCAAACGTGCTAGATGTTGCACATC GGCAACCAAATCTGCAGTGTGTTTTTTGGCACACAGTTTGACAGATTAGC CGAATAGGCTCGGTGGGCGTCACTCCACCGTCCGGAAAGGTAGTGTAAAG TGCCTTTCCCAAGGGCACAACGTCGGGGCATGGTGAGTATCGAACTCGGG ACCTATTGATTCCGAGTTCAACGCTCTAACCGTTACGCCACGCCGACGTC ACTAGCATTGTGATGAAGGTGGACCGGACTATGAGATCTGTTTATTGACC TGATACCGTCACATTGTCTCAAAGAAGTTTTAATTGGTATTTCAAACTTA ATGTGGTTGGTGCTCCTTCTTTTTCTGGAATCCGTGAATGAACGAATGAA TGAATGAATGAATGAATGAAAACTTTATTATCGTGTCTTGCGACATTTTG CGCCCAGCCCATGCGGGCTTTTAAGACACCGTATATCTTACATTAAATGC ATAAAGAAAAGATCAGGAGTACATTGATGTCAAACGTTCTCTTTTCTTAC AACCACAGGCGATTTTCCTGTGGGTGAAGAAGGGCAACCGTGCTGTTCAC CTGTACGAACGTCAGGGCTACGTCATCACCCATACGTTCGGCGGCTGGTT CAAGCGATGTGCGACGGGCTCCAGAGTGAGTCTGATTCTCACTGTAGCGT AACATCTTCCATCTTCTTACTTCACTCTTACGTGTTGTTTTTCTGTTTGG GTGACTGGTTGTCTTTGTCTCTCTCTCTATC

Coding sequence (CDS) from alignment at Sc0000280:208949..214129-

>Blg00027.2 ID=Blg00027.2|Name=Blg00027.2|organism=Branchiostoma lanceolatum|type=CDS|length=675bp|location=Sequence derived from alignment at Sc0000280:208949..214129- (Branchiostoma lanceolatum)
ATGGCGGTTGAACCTGTAGTTGCTCAGCCTGGAATGGCAGAACTGCCCTC
TGAAACAGCACCAGGAACTGAGCCGGGCAGTCCGCTGCAGGTCAGGAACA
TGGAGGCAGAAGACATCGAATTTGTCTCTCGAATGTTGGTGGACGCTTTC
AGTGATAAGTTTGAACACGCGGTTGGCAAGAGTCGGATGGAAGGTGCGGT
CCAACAGACAGTCGCTTCGCTGGGCAGGTCCCAAGACGTCTGGCACAGAT
ATCGCGTCGCCGTGTACGAGGGCAGGCCAGCAGGCGCCATGGCCTTCAAA
TTTCATGGAGACAGCGCCATGGGGGATTTCAGCTGCGGGGAGGCGTGCTC
ATTTCTTGGATGTGGCACGTGTGGGCTCATCTGCATGGGCGCTGCCTTGG
AAAACGACAACATTCCTGTGGGGCAGTGTTACCTGGACCACATCGGCGTG
GACGCGAGCTTTCGCGGGAAGGGCATCGGGAAGGTGATGCTGGATAGGGC
GGACTATGAGGCCAGGCAACATGGGTGCACAGCGATTTTCCTGTGGGTGA
AGAAGGGCAACCGTGCTGTTCACCTGTACGAACGTCAGGGCTACGTCATC
ACCCATACGTTCGGCGGCTGGTTCAAGCGATGTGCGACGGGCTCCAGAGT
GAGTCTGATTCTCACTGTAGCGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00027.2Blg00027.2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00027.2-exon-Sc0000280-1570713199:213992..214129Blg00027.2-exon-Sc0000280-1570713199:213992..214129Branchiostoma lanceolatumexon
Blg00027.2-exon-Sc0000280-1570713199:212458..212547Blg00027.2-exon-Sc0000280-1570713199:212458..212547Branchiostoma lanceolatumexon
Blg00027.2-exon-Sc0000280-1570713199:211822..211948Blg00027.2-exon-Sc0000280-1570713199:211822..211948Branchiostoma lanceolatumexon
Blg00027.2-exon-Sc0000280-1570713199:211466..211594Blg00027.2-exon-Sc0000280-1570713199:211466..211594Branchiostoma lanceolatumexon
Blg00027.2-exon-Sc0000280-1570713199:211144..211203Blg00027.2-exon-Sc0000280-1570713199:211144..211203Branchiostoma lanceolatumexon
Blg00027.2-exon-Sc0000280-1570713199:210465..210621Blg00027.2-exon-Sc0000280-1570713199:210465..210621Branchiostoma lanceolatumexon
Blg00027.2-exon-Sc0000280-1570713199:208949..209171Blg00027.2-exon-Sc0000280-1570713199:208949..209171Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:208949..214129 -
Properties
Property NameValue
GeneIDBlg00027