Blg00027.1 (mRNA) - B. lanceolatum

Overview
NameBlg00027.1
Unique NameBlg00027.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:206266..214153-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00027.1 ID=Blg00027.1|Name=Blg00027.1|organism=Branchiostoma lanceolatum|type=mRNA|length=7888bp|location=Sequence derived from alignment at Sc0000280:206266..214153- (Branchiostoma lanceolatum)
AAACAGCCTAACCACGCATCTGCTTGGAGCCATTGTATCGGTTGCTAGGG GACGCGCTAGCCACTGCGCAAGTCCGGAAGTAAAGACCCAGTGTCACCGT TCGTGCGGACGCCAGAAGCACTCGGCGCAAATTATTCGCTCAAGAAACGT ACAAGTTTGACGGTATGTCGTCTTAAAATGCTCTAATTGTCTTGCAGTTT TGTTAGAATCTGACTTAAGATAGCTGTCGTCGGTGAACACAGTTCCTGTT TTCCATAACGATGTGTATATTTGTTGTTTTGACCAACAACAGGTTGTTTT GGCTCGTTATACCTCGGTACGCGGTATCAAATTGGCACAATACAAATTTA AAGCAGCAGCTGGACAGATCATTGTAAACGGTCAGACGTTTCAGATAGCA TCCAATTTCTTTCGCAGTGACCGAGGAAAATCCAACAGGTGGTATTCTAT AGTATAGAGCAAAAACTATGAGTGACTTAATATTGTACTAAATCGTTACT CTCCAAGCAGAGGTTGGTCTCTGGCTGGTTTTTGATGTGTTTCTAGGCGT TTTTGTCGGGCTTTCTATTTTGTCCTGTTTTCTCTATGTCACCAGCCCAC ATAAAGAAAACGTGACCAAGTAGAAAGATCGACAAAAACGCCTAAAACAC GTCAAAACCTCTGCTTGGAGAGTACTGAATCGCCAATAGAAAACACACTG TAAGGTACAGGTGTAATACGATCACGAAAGTAGGTCATGTAAACAAGATG GCTAATGGAAATTATTTAATGCTAAAAATGATATTGGTTTAATTCTGTGC CTAAATCTGCATTGAATTTTATTTGGCAAAGATTCCAGTCTCAGCCATGT ACTAAAATGTTGTTGTCCTTGTTTAAAGTCTATTGTTTCGCTAGACATGG TCTCTTGGTGCTGGGTTTCACTTGGTTCAGTTACAAAATGCAAAGTCATT GTCTCTGGTGTTTACGTATTGGTGACTTGTGCTTGTGTTTAGCTGGAAGT GTTTCTAGGAGAGCGCGTCGAGTCTGTGCGTACTCTCAATGTACGTAAGG ATTTCCACGGCCACGGGTACCAGGTGTGACGCCAAATTTCTGCCCCGCCA GATTTCTGCTTCGTATGGTTGGGGATTGGTTTAGAGCTAGGGCTAGCAAT TAGGATTAGGGTCGAGTTAGGGTTAGGGTTAGCCTCCACAGAGCGACCCC TCCTTCCAAAGTTCTAACAGACTTCTGCTAGGAATATTAGCCCACTCGTA GATTCGAGTCCGCACGTGCAGTGTCAAAGGTGAAGGCCCCTGGCTTGTAA ACAGTTCTTGTTTCGATATTGTCTTTTGTTTGCAAAGCACTGCCCAGACG ATTTTGGTTACGTCTAAAGGGCCTTCACCTTTGATACTGCGCATGCCTAC TTGAATCTACAAGTGGGCTTATTTACCACGCAACAAGAGTATGATCCACT TCTTTCACTTCAGGTATACTGAAAAACCCCTAGCAGTGTTGGGGCATTTA TTTGGCAGGGGACTGAATGACTGCATTACTATTACAGTAACCAATGTATC AAAAGCATTAGACAGGATACTGAACATAAAGATTCCCCTTTGGTTCAAAT GCACAGGACAGAAGAGTCGAGACATCTCCAGAGATATCATGGCGGTTGAA CCTGTAGTTGCTCAGCCTGGAATGGCAGAACTGCCCTCTGAAACAGGTTT GTATCAGTATCTAATATCAAGTCTCATAGTTCTGCATGTTCTGCATGCAA GCCACACTTTGAAAAATAATGGTGAATTATTAAAAAAGATGTGCTAGATG CAGCGTTAGCAATCCCCAAAGATGGCACACGTCGGATATCCAGGTGTTCA AAGTCCTAGATAACACGGTCTTAGGATAAAAGAAAATTTGGAGCTAAAGC CACCCTCTCATTGGACCCGGGGCACGCTGGCGGCGTCGCTGCATCCTAAA CTGGATTTGTGTTACCCTTGACTTTATAATGGGAATATCGTTCAAAACGT ACAAGTATGACCAAAAAGACAACAAAACACACATTAGCTTAAAAATATTC GTTTTTTGTCGATGAAATTCGATCGGCCGCAGCGACGCCGCCAGCGTGCA ACGGGTTCAGTGAGAGGGGGGCTTAAGAACTCCGGCGGTATTAAGTGATT TGTGATTACCACCCTGATGAAAATACATTGCATTTTTTATTTCCTATATT TGCAGCACCAGGAACTGAGCCGGGCAGTCCGCTGCAGGTCAGGAACATGG AGGCAGAAGACATCGAATTTGTCTCTCGAATGTTGGTGGACGCTTTCAGT GATAAGTTTGAACACGCGGTTGGCAAGAGTCGGTAAGATTTCCGTAAAGT ATATTCAGTTTCATGCGTTGGCTAGAGCCCTCTCCATTAAATATCTTCTA ACCCTTTCTCATTTCTCAGTGGCTTTTTGAAAGCACAAGCTCATTAGTAT GTTTCACAAATGCCTCAGCTATGATTAAGTGAAATGCAAATGAGCACCTC TATATATCATAACAACACACACGCCAATAATGTCACATATGAAAAATGTC GTTCTGTAGGATGGAAGGTGCGGTCCAACAGACAGTCGCTTCGCTGGGCA GGTCCCAAGACGTCTGGCACAGATATCGCGTCGCCGTGTACGAGGGCAGG CCAGCAGGCGCCATGGCCTTCAAATTTCATGGAGACAGGTCAGTTTATAG GACGTATGTTGGAAAGCTAAAAGAAATACATGTCTTGGCTAGCGGCCTCG TACTATATATAAATCACATATTGCACAGGTATACACAATTACACATATCG AAGCATTTTAACCTTGATTGTGGGCATGTTATAAGTTCTGTGAAGAACCA AAGCTTAGGATGCCGCTCCGTTTCCTTGGTTTCCTGCATGTTGCTCTGAT TCTGGCTGGAATCTAAACCACTAGAATCTAAATTCCTTTATCTGCTGCAG CGCCATGGGGGATTTCAGCTGCGGGGAGGCGTGCTCATTTCTTGGATGTG GCACGTGTGGGTATGTATCTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTG TGTATGAACAGTAAACCATCTTGTTTTGCAATGCAGGAGTTTTGTACTTG GATTTTTATCGTATACGCCTTGCTGTTCATGGAATAAGACAACGGCTGAA CGATTAAATATGTTCGTATTGCATTTCTACATTTAGTGCACGGTGATTCG GACTATGAGATTAGTCCATTGTCACAGTTTACTGACGTTAGGGCTCCGTC ATATGCATACTTGTGCGTATATTTAAGTGCATTACCAGTTGCACATTAAC ATTTTTTTTTGGTTTAAGTAAGGTTTGCGGGAAAAAGTTGTTTTCTGCTT TGACTCACCGTTGTGCAGCCTATAGCTAGTGATTGAACCTAAGAAATCAC TTATTCGGCTGCAAACTTAACATAAACCCAAAAACATGTTAATACGCAAC CAATGCGGACTTGTATATACGCACAGGTGTGACAGGGGCTTTATGGCGGG TTGTTTCCATGATGTCTTTTAAACGCTTACAGGCTCATCTGCATGGGCGC TGCCTTGGAAAACGACAACATTCCTGTGGGGCAGTGTTACCTGGACCACA TCGGCGTGGACGCGAGCTTTCGCGGGAAGGGCATCGGGAAGGTGATGCTG GATAGGGCGGACTATGAGGCCAGGCAACATGGGTGCACAGTACGTAGGCT GAATAGCCAATAACAGAAACATCTTTTGAAATAATCTATGCTTGTGTTTA GTGTAACGTCAAATGACAGTCACAGTAACTGGATAGAATTTGAAAACAGT CAGACGTTTCAGACAGCATCCGCTGTCTTTCGTCAGTGATTAAAGGGGGG TAACTGGAATAAGCAGGTTTTAAACCAAAACTCTATAGATATGTTGATCA CGTGAAGACAATTTTAAGTATCACGTTGTTTAAGGTTTGTTTTAACATAA AACACTGGGATATTGTACATCTAATACAGAAATGTCTACATCCATATTAA AAGATTAATGACAGAAAAATTACCATGCTACAAAAGAAAAAGCATACTTT ATGCATTTTTGTCTGACACCAAATTTTGCTGTTACAGGGTATGTCGGACA ACCCGGCACCATGTCAATAGGACTGTTTCTAGTCATTTTGCAGTCAAGAA TACGCCTAACTCTAACCCTAACCTAATTCTAACTCAGGCCTAACCCTAAT CCTTACTCTAACCATAACTCGAGTCGTCCTGGACCTGGTGCCGAATCGTC CTGATTGGCTATGTGCCGAATAGGCCGATTCTGACAGTCTATGACAATTA GCAGTTCAACCAATGATAGCATGGCAAATGGCATTCAACCAATGAGACAG CGGTTGCATGTCGGTCAATATTTGAATTTTCATGTTTTTAGTTTGCATTT CTACGTTGTGATGAAGGTAAAATAAATGATAATTTAACGGTTGACAGTGG CAAACGTGCTAGATGTTGCACATCGGCAACCAAATCTGCAGTGTGTTTTT TGGCACACAGTTTGACAGATTAGCCGAATAGGCTCGGTGGGCGTCACTCC ACCGTCCGGAAAGGTAGTGTAAAGTGCCTTTCCCAAGGGCACAACGTCGG GGCATGGTGAGTATCGAACTCGGGACCTATTGATTCCGAGTTCAACGCTC TAACCGTTACGCCACGCCGACGTCACTAGCATTGTGATGAAGGTGGACCG GACTATGAGATCTGTTTATTGACCTGATACCGTCACATTGTCTCAAAGAA GTTTTAATTGGTATTTCAAACTTAATGTGGTTGGTGCTCCTTCTTTTTCT GGAATCCGTGAATGAACGAATGAATGAATGAATGAATGAATGAAAACTTT ATTATCGTGTCTTGCGACATTTTGCGCCCAGCCCATGCGGGCTTTTAAGA CACCGTATATCTTACATTAAATGCATAAAGAAAAGATCAGGAGTACATTG ATGTCAAACGTTCTCTTTTCTTACAACCACAGGCGATTTTCCTGTGGGTG AAGAAGGGCAACCGTGCTGTTCACCTGTACGAACGTCAGGGCTACGTCAT CACCCATACGTTCGGCGGCTGGTTCAAGCGATGTGCGACGGGCTCCAGAG TGAGTCTGATTCTCACTGTAGCGTAACATCTTCCATCTTCTTACTTCACT CTTACGTGTTGTTTTTCTGTTTGGGTGACTGGTTGTCTTTGTCTCTCTCT CTATCTCTCTCTCTCTGCATTCCTCTCCTTACGATCGGATGTCACCCAGA CTATCTCTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCA CTCACTCACTCACTCGCTCGCTCACCCACTCACTCACTCACTCAGTCACT CACTGCCATGTATCCTCCGTATTATGCTTATTTCTATACATGTGAAGCCA GTGTCTTCGGTGCCTTGTATGTGCTTATAGATATATCTGTGTGTGTGTGC GTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGCTTGTGTGTGTTA GAGAGTGTGTGTGTGTGTGCGTGCGTGCGAGTGTGTGGTCTATTTTTGTG TGCGCGTGTGTTTGCATGTGCGATTTGTGTTTGTCCATGTGTGCTATGCT GTTATTCCACTTTTGAAATGTTCTGCCCAAACTGCAGGACTGGCACAACA TGGAGAAGCAACTGTAACGCCCCGGAAATGACGTCACAACAACGTCTCAA GTTTCCATCTTGTCACAGAGATGTGATGACCACAAGGCTGATACTAAAGG AAGGAAGAAACAGTTCCGTCATGCATGCACGCATATATACCAACATTCCC TGAGTGACGTGTTCTTTCTACAAATTAACAATCTATACAGCCTTATCTTC TAAACGTGCTTAGGGCCATGTCACACTTGTGCGTATATTCAAGTGTGCGT GAGTTGCGCAGTAACATTTTTTTGGTTTAAGTAAGGCGAAAAAGTTGTTT TCTACTTCGACCCACCGTTGTGCAGCCTAGTCATCGAACCTAAGAAATCA CTTATTCGGTTGCAAACTTAACCTAAACCAAAAACACGTTAATACGCAAC TCATGCGGACTTGTGGACAAGTGTGACAGGGGCTTTATGTTTAAGTCCGT ATGAGTTCCGTATCAACATTTTTTTGGCTTAGGTAAACAAAAGTTTTTTC ACCCACCGTTTTGCAGCCTGGTTTAATATAGAACCGGAAAATACTTTTTC GGCCGCAAACTATACCTCGCACAAAAAATGTGCGAAATGCATACGGCCAG AATTATACGCACAAATATGAACGGGCCCTTTGATAGGCCATGTATTTAGA TATCAGTCACTTTTCAATGAAGGCTTTCAAGTAGAGATGATAAGTAAAAC CAGACACTATCATGGTACAAACTGATTCCACTTGTGTTCACCTTTTTGTT TGCAGTTGAAAAAGTCCCTCGACTTTCAGAATGAATTTGTGAACTTGTTT TGTGTCAAAATAAACTGAACTATTCTATCAACAGTCTCCCTGGTTAGAAT TTACCCGGGATCCGGTAACAAATAGGCGCCGTAAGCTAATCGTGAAAACA CCGAGAGGTACCCCCAGTTATGCTTCGATCCCAATTGCAATCCGGGGCCC GGCCGGGCTGTTTGCGAAAACGGAAAAAAAAATGCATATCAAGAAAGTAT ACATTATATGGTTAGGAGTGATTTTTTTCGTTTTGTATCTTTTGTTGTCT TTTATTTCATACTTTCTGTTCCAACTAGCTGCCCGGCCGGGCCCCGGATC GGAAATGGGACCAAACCATAACCGGCAGTCCACCGGGACTACAGCCCCTA CGTACGAGCACGGGTGAAAAGTTGACCGAAGTATTACAGAGGCTCCGAGT AGCATATCACGATGCCCTTAAAATCTCGTTGTCCCAACCCAGGTATACCA GCAACAGTCTTTGTTTTGTACAGCTTGGTGTTGACCGGGAGGCGAAAGTT GACGCATTGTTTCGTCGCCTCTTGGTGTCGGGAACGACGTCATCAAACGT CTGCTATATTGAGCAGCATTCTCTTCGAATAGGTCCTGGTATTAATACTG TCACGTTCGCTGTAAGAGGCCGCTTACTTTGAATGTCGCTTTTATGTAGT CATTGTAAATACCTGTAGTTTTTTTTAGATGTTTGTATGTGTTGATGTAT GGGTCTGAGGAAAACAATAAATATGTAAAATGAATTCATCCAAAACTCTG TGAATTGGTATGCTATACATAGTAAGGTGAAGTCTATTCTAAGATGGTTC AATTGAAGACGGCATCAAGACAAGGTTGTATGCTGATAAGTTAATTGTGT TGTTTTAGCACAGGCTCTAATGTTGTCTCGTAGGGTGGGAGGGCAGAAAC TAAGTGCTGGAAAGTTCGACACGAAGGCCTCCTTTCCTGTACTACACCCA ATCCCATAATAGTCTACCTCATTTCAGTCAGTTAATGTAGGGGCTCTGCC CCCTCCACTCAAAGAGGAGGAAATCTTAATTATCATGTAATTACAAGAAA TATTCAAATATTCATAACTTTGATTATAGTTAGACATTTCACTAATTTTA GGAGCCTCTAAATGTAGAACATGTAACTGCTATGTTTTGCACTTGACGAA AACTATATATGCATGCTAGATATACATAAGAATCTTGACTATTTTAATTG GTACCTGTGACTTATTGACAACAATAGATGGGACATTAGAACGTTCTTTT AAATGAATAAATGAAGCACTTTATTGTAAACCCATGCTTCGAATGGCTAG GCGCAGGTCGTCTACGTATGAGTTAACAAACGTGTAAAAAACATATATGT AGAAAAGTAATATGTAAAGGCAAGAAATACACCAGTTAAACCATAGGCGG TGGGCCACCGAAATTTTGTTGAAAATTTTTTAGTCTAG

Coding sequence (CDS) from alignment at Sc0000280:206266..214153-

>Blg00027.1 ID=Blg00027.1|Name=Blg00027.1|organism=Branchiostoma lanceolatum|type=CDS|length=678bp|location=Sequence derived from alignment at Sc0000280:206266..214153- (Branchiostoma lanceolatum)
ATGGCGGTTGAACCTGTAGTTGCTCAGCCTGGAATGGCAGAACTGCCCTC
TGAAACAGCACCAGGAACTGAGCCGGGCAGTCCGCTGCAGGTCAGGAACA
TGGAGGCAGAAGACATCGAATTTGTCTCTCGAATGTTGGTGGACGCTTTC
AGTGATAAGTTTGAACACGCGGTTGGCAAGAGTCGGATGGAAGGTGCGGT
CCAACAGACAGTCGCTTCGCTGGGCAGGTCCCAAGACGTCTGGCACAGAT
ATCGCGTCGCCGTGTACGAGGGCAGGCCAGCAGGCGCCATGGCCTTCAAA
TTTCATGGAGACAGCGCCATGGGGGATTTCAGCTGCGGGGAGGCGTGCTC
ATTTCTTGGATGTGGCACGTGTGGGCTCATCTGCATGGGCGCTGCCTTGG
AAAACGACAACATTCCTGTGGGGCAGTGTTACCTGGACCACATCGGCGTG
GACGCGAGCTTTCGCGGGAAGGGCATCGGGAAGGTGATGCTGGATAGGGC
GGACTATGAGGCCAGGCAACATGGGTGCACAGCGATTTTCCTGTGGGTGA
AGAAGGGCAACCGTGCTGTTCACCTGTACGAACGTCAGGGCTACGTCATC
ACCCATACGTTCGGCGGCTGGTTCAAGCGATGTGCGACGGGCTCCAGAGA
CTGGCACAACATGGAGAAGCAACTGTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00027.1-exon-Sc0000280-1570713199:213992..214153Blg00027.1-exon-Sc0000280-1570713199:213992..214153Branchiostoma lanceolatumexon
Blg00027.1-exon-Sc0000280-1570713199:212458..212547Blg00027.1-exon-Sc0000280-1570713199:212458..212547Branchiostoma lanceolatumexon
Blg00027.1-exon-Sc0000280-1570713199:211822..211948Blg00027.1-exon-Sc0000280-1570713199:211822..211948Branchiostoma lanceolatumexon
Blg00027.1-exon-Sc0000280-1570713199:211466..211594Blg00027.1-exon-Sc0000280-1570713199:211466..211594Branchiostoma lanceolatumexon
Blg00027.1-exon-Sc0000280-1570713199:211144..211203Blg00027.1-exon-Sc0000280-1570713199:211144..211203Branchiostoma lanceolatumexon
Blg00027.1-exon-Sc0000280-1570713199:210465..210621Blg00027.1-exon-Sc0000280-1570713199:210465..210621Branchiostoma lanceolatumexon
Blg00027.1-exon-Sc0000280-1570713199:209055..209171Blg00027.1-exon-Sc0000280-1570713199:209055..209171Branchiostoma lanceolatumexon
Blg00027.1-exon-Sc0000280-1570713199:206266..208516Blg00027.1-exon-Sc0000280-1570713199:206266..208516Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00027.1Blg00027.1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:206266..214153 -
Properties
Property NameValue
GeneIDBlg00027