Blg00023.3 (mRNA) - B. lanceolatum

Overview
NameBlg00023.3
Unique NameBlg00023.3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:73766..77451-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00023.3 ID=Blg00023.3|Name=Blg00023.3|organism=Branchiostoma lanceolatum|type=mRNA|length=3686bp|location=Sequence derived from alignment at Sc0000280:73766..77451- (Branchiostoma lanceolatum)
ACAAAGGTCACAGAAAATTTTCATAGTAGCGAGCTGCTGTTTTGGGGTAC AAGTCGCGAAAAAAGCGTACAAAATCCGTAGTTAATCGACCTTTTGAAGG CAAGACATATCCGGGCTTTTTTCGATGGTACGGACGGCATATGCATTGTA CTACAGAAACGGTAACACAGACAACTTTCCGTCAGTAAGATATACATAGT CCTGTAGACCTCAATCATTTTGTCTGTCAACTTCCTCATCGTCTTTGAGA GTGTTCTGGACTTATAGTGAACATTTGAAGTTAAGGAGGTAAGCCCAGAA GTCCCGATGTTAATGGACGTATTATATGCTAAAGTAAGTATATGCTAAAA AGGATAGATCATTTTGCAGCCAGCATCTGTATAGTAACTAATCAGAACCG TTGACGATACATGACGCTTCATGTTTGTTCCCTGTTTGATGAATATCACA GGATTTAATACTTTGAAAGACAGTACAGCCCAAAACTCCCTTAACTTTGC GTGGCGTTTAATAGTAACTAATATTATTAATCTGTTCCTTTTTTGTAATT GTGTGAAGATAACATATCTAGCAAAATGAATCTTAACACTTCTTTTTTTC AACTAACTGCAACTGAATGAGAGCGTCAAATAATTGGTGTGTTCTGCTTA ATTTTTAGCCTCAAGGAAAATACAAGGTCTTCAGCAAAGAAAGAAGAACA GAGGCGGAAAATGACACAATTCCTCAATTCAACGTTTGATCGGTGAAAGA GACCTTAAGCTTGCCACCAAACAAAGTGAAAAAGGTTGAATAGTCGAGTA ATTACGTAGGCAATTTTTCCGAGGACGTCTCAAGTGAATATGGCACCCTG TACCAGTTGGTATTTGTTGACATTCCATTTGATTCTGTCTGTTTTTCAAA CTCATCCAAGCTTTTCCGTTTTTGCTGAACAGAATGAAAATATTACAATA CCTGAGGATATATCAGTTGGCAGCACAGTGGTTTATTTGCGACATATTCT AGACGCCAATTTTGCTGTTGCAGAAGTCGGAGATGAAACTTTTTGGTCAG TAAACATCACTAGAAGGGACGACTTCGAACGGTTTGAGGTTTGTCCTGAG AACTTGACCGTAATTTTAGCGGCGCCGTTGGACTATGAGTTGAAGCCGCG GTATAACATTTCGATGGTGCTGACAGATACCGGGGACGACAGAATTTTGC ACGTACGTCTCGTCGTGGTAGTCATGGACGTGTCAGGATACCCACCGCTG TACAATAAACGTTGTGAAACGCCGGTACTATCCGACAGGGGGCGCGGTGA GGACTATCGTATACTGAGCGGTGACAAATACACTATCACAGCAAACGGCG AACCTGTGTTAGCTCACGACGACATTTTTCGTAATACAGGATTTGGGGAA GGCCAGTTGGCTCGTTTTTCCATAAAAGACGGCTGCTCCTGGCGATTTTT CTTTGGTGCGCCTGAATTTATAAATGAGGGAGCTATCTTAGCGACAGTAT TAAAAGGGCGCGGTCAAAATGGTCGAATCGAGTTTCAATGTCACGACAAA GAGTGGAAAAAGAAAGGTACGATCACAGTCTTGGATCTTTCCCTTGACAA TGAGTTGCCACAGTGGATACATATGGACCACTTGAACGATGAACAAAGTG TCCGTGTGATGATCATTATAGAGTTCAACGATCTGTGGTGCAGTACATCC TGCTGGTTGCGGTGTGGCGCTAATGTCACGTTGGATGGAACAATGGTACT CGTGGAGTACACATTTCAGTACAACATTACAGGATGTCCCAAGGACAGGT ACGGAGTGGAGTGTGACAAGAAGTGTATTTGTAAGAACGGGGCTCGTTGC CATGGCTTCAGCGGTGCCTGTGAATGCCTCCCGGGTTGGAGAGGGAGGGC CTGCGATGTTCCCTGGCCTGAGGTCGTCATCATAGCGACACCTGGCGACT CAGTCATTACCTACATCGGCACCAATCTCTCCCTGACCTGCGTGGCCCCC CACATCCAAGTAGCAAATATGACTTGGTTTTATCAATCAGAAATCGAATA TATCGACTCAAACATAACACAAGGAGTAACACTGAACAATTCCATAAACT TTCAACCAGTAACAGAATCATCCAATGGCAGATATACTTGTATAGTAAAG GATATAGATGGTAAAGTTTTCAGTGCAACGTTTGTGCTAAACGCTACAGA ATGCCTCCCCAACTATTATGGGGAAGTTTGCAGTCAAGTGTGCAATTGTC AATATGGTGGGACGTGTGACAGGTTGAAGGGTTGTCTGTGTCCTCCGGGC CGCCATGGAGACAGGTGTGAGCACACATGCGCACCTGGCACATTCGGGCT GAACTGCAGCATGACGTGTTACTGTCAGAACGATACCTCGTGTGATCAAG TAAATGGTACCTGTATTTGTGCAGCCGGACAGTCTGGCGAATTTTGCCAG AGCAGCTCTGAAAATAAGAGCAGAACCTTTGTTATAGTACTGGCCACCGT TGTTCCTATCATTATAATAATCGGTTGCATCGTCGTTACTATTGTAACTC TTAAAAGACAACGGCGGTCGCGAGGTCAACGGAATCCAGAAATAGAAATG ACAAACGTGGACAGAGTAATTATGGCTCTTAGAGACATCCTTGCGCCGTG GGAATTGGACAAAGAGGACCTTCATCTCGAACACATGATCGGTGAGGGAG AGTTCGGCCATGTCGTGCGAGGGAGACTGCGCATACCCGAGGGCTACCAG GTCTTGGTGGCCGCTAAGAGTATCAGACCTGACCGCATGACAGCGTCCGT TGTCCGTGACTTCGAACGGGAAATGAGCATACTTGCCAGGATCCACGAGG ACCAAGAGGGACATCCCAATATAGCAAAGTTTTATGGCGCTGTGACGAAG TCCGAGCCTCAGTACATCGTGGTAGAGTACGCGAGCAATGAGGACCTGCG ACGATACCTGTGGAGTTTGAGAGAAGACTTTAAGATCACGAGACATAAGA GGGTGTTGGAACGACTTGGCTTTGCTGCTGACGTGGCCAGTGGTTTATCG GAGCTGGCACGTCTGAAGATCGTGCACCGGGACATCGCAGCTCGCAACGT CGTCATCAGCGACACGATGGTGGCCAAGATCGCGGATTTCGGGTTGTCGC GTGACGTTTACGTGTCGTCGGCATACGAACGCACAAACCAGAGCGGCCAG GAGGTACTGTTGCCGCTGAAGTGGATGGCCGTGGAGTCGTTACGGGACGG GGTGTACACGTGTGAGAGTGACGTGTGGTCGTACGGCGTGCTGCTGTGGG AGATCGCCAGCTTTGGGGAGGAGCCGCGCTATCCGAGTGGTCCGATGCAC CCCGACGTGTGCACAATGTTGGAGCTGCTGAGGAAGGGGGTGCGTCTGCA GCAGCCACACAACTGTCCGCGACACTTGTACCGCATCATCAGGTCCTGCT GGATAGTCGACCCGTCCAGGCGACCGACTTCTGAAGAACTGGTGCGAAAG ATCAAGCTTCTGATGCCACCGAGGCATGCTGATCATCTATTTAATCACTC ACCTACTTCGCCGCCGCTGTCAGCCCGCCACCACGACTTACCGCCACCGC TGCCGGCTCGCCACCGCGACTTACCGTCGCCTCGACTCACCGACACCGCC GCCGATGCCGCCGCCACTTCCGCCCCGCCGCAGTGA

Coding sequence (CDS) from alignment at Sc0000280:73766..77451-

>Blg00023.3 ID=Blg00023.3|Name=Blg00023.3|organism=Branchiostoma lanceolatum|type=CDS|length=2847bp|location=Sequence derived from alignment at Sc0000280:73766..77451- (Branchiostoma lanceolatum)
ATGGCACCCTGTACCAGTTGGTATTTGTTGACATTCCATTTGATTCTGTC
TGTTTTTCAAACTCATCCAAGCTTTTCCGTTTTTGCTGAACAGAATGAAA
ATATTACAATACCTGAGGATATATCAGTTGGCAGCACAGTGGTTTATTTG
CGACATATTCTAGACGCCAATTTTGCTGTTGCAGAAGTCGGAGATGAAAC
TTTTTGGTCAGTAAACATCACTAGAAGGGACGACTTCGAACGGTTTGAGG
TTTGTCCTGAGAACTTGACCGTAATTTTAGCGGCGCCGTTGGACTATGAG
TTGAAGCCGCGGTATAACATTTCGATGGTGCTGACAGATACCGGGGACGA
CAGAATTTTGCACGTACGTCTCGTCGTGGTAGTCATGGACGTGTCAGGAT
ACCCACCGCTGTACAATAAACGTTGTGAAACGCCGGTACTATCCGACAGG
GGGCGCGGTGAGGACTATCGTATACTGAGCGGTGACAAATACACTATCAC
AGCAAACGGCGAACCTGTGTTAGCTCACGACGACATTTTTCGTAATACAG
GATTTGGGGAAGGCCAGTTGGCTCGTTTTTCCATAAAAGACGGCTGCTCC
TGGCGATTTTTCTTTGGTGCGCCTGAATTTATAAATGAGGGAGCTATCTT
AGCGACAGTATTAAAAGGGCGCGGTCAAAATGGTCGAATCGAGTTTCAAT
GTCACGACAAAGAGTGGAAAAAGAAAGGTACGATCACAGTCTTGGATCTT
TCCCTTGACAATGAGTTGCCACAGTGGATACATATGGACCACTTGAACGA
TGAACAAAGTGTCCGTGTGATGATCATTATAGAGTTCAACGATCTGTGGT
GCAGTACATCCTGCTGGTTGCGGTGTGGCGCTAATGTCACGTTGGATGGA
ACAATGGTACTCGTGGAGTACACATTTCAGTACAACATTACAGGATGTCC
CAAGGACAGGTACGGAGTGGAGTGTGACAAGAAGTGTATTTGTAAGAACG
GGGCTCGTTGCCATGGCTTCAGCGGTGCCTGTGAATGCCTCCCGGGTTGG
AGAGGGAGGGCCTGCGATGTTCCCTGGCCTGAGGTCGTCATCATAGCGAC
ACCTGGCGACTCAGTCATTACCTACATCGGCACCAATCTCTCCCTGACCT
GCGTGGCCCCCCACATCCAAGTAGCAAATATGACTTGGTTTTATCAATCA
GAAATCGAATATATCGACTCAAACATAACACAAGGAGTAACACTGAACAA
TTCCATAAACTTTCAACCAGTAACAGAATCATCCAATGGCAGATATACTT
GTATAGTAAAGGATATAGATGGTAAAGTTTTCAGTGCAACGTTTGTGCTA
AACGCTACAGAATGCCTCCCCAACTATTATGGGGAAGTTTGCAGTCAAGT
GTGCAATTGTCAATATGGTGGGACGTGTGACAGGTTGAAGGGTTGTCTGT
GTCCTCCGGGCCGCCATGGAGACAGGTGTGAGCACACATGCGCACCTGGC
ACATTCGGGCTGAACTGCAGCATGACGTGTTACTGTCAGAACGATACCTC
GTGTGATCAAGTAAATGGTACCTGTATTTGTGCAGCCGGACAGTCTGGCG
AATTTTGCCAGAGCAGCTCTGAAAATAAGAGCAGAACCTTTGTTATAGTA
CTGGCCACCGTTGTTCCTATCATTATAATAATCGGTTGCATCGTCGTTAC
TATTGTAACTCTTAAAAGACAACGGCGGTCGCGAGGTCAACGGAATCCAG
AAATAGAAATGACAAACGTGGACAGAGTAATTATGGCTCTTAGAGACATC
CTTGCGCCGTGGGAATTGGACAAAGAGGACCTTCATCTCGAACACATGAT
CGGTGAGGGAGAGTTCGGCCATGTCGTGCGAGGGAGACTGCGCATACCCG
AGGGCTACCAGGTCTTGGTGGCCGCTAAGAGTATCAGACCTGACCGCATG
ACAGCGTCCGTTGTCCGTGACTTCGAACGGGAAATGAGCATACTTGCCAG
GATCCACGAGGACCAAGAGGGACATCCCAATATAGCAAAGTTTTATGGCG
CTGTGACGAAGTCCGAGCCTCAGTACATCGTGGTAGAGTACGCGAGCAAT
GAGGACCTGCGACGATACCTGTGGAGTTTGAGAGAAGACTTTAAGATCAC
GAGACATAAGAGGGTGTTGGAACGACTTGGCTTTGCTGCTGACGTGGCCA
GTGGTTTATCGGAGCTGGCACGTCTGAAGATCGTGCACCGGGACATCGCA
GCTCGCAACGTCGTCATCAGCGACACGATGGTGGCCAAGATCGCGGATTT
CGGGTTGTCGCGTGACGTTTACGTGTCGTCGGCATACGAACGCACAAACC
AGAGCGGCCAGGAGGTACTGTTGCCGCTGAAGTGGATGGCCGTGGAGTCG
TTACGGGACGGGGTGTACACGTGTGAGAGTGACGTGTGGTCGTACGGCGT
GCTGCTGTGGGAGATCGCCAGCTTTGGGGAGGAGCCGCGCTATCCGAGTG
GTCCGATGCACCCCGACGTGTGCACAATGTTGGAGCTGCTGAGGAAGGGG
GTGCGTCTGCAGCAGCCACACAACTGTCCGCGACACTTGTACCGCATCAT
CAGGTCCTGCTGGATAGTCGACCCGTCCAGGCGACCGACTTCTGAAGAAC
TGGTGCGAAAGATCAAGCTTCTGATGCCACCGAGGCATGCTGATCATCTA
TTTAATCACTCACCTACTTCGCCGCCGCTGTCAGCCCGCCACCACGACTT
ACCGCCACCGCTGCCGGCTCGCCACCGCGACTTACCGTCGCCTCGACTCA
CCGACACCGCCGCCGATGCCGCCGCCACTTCCGCCCCGCCGCAGTGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00023.3-exon-Sc0000280-1570713199:77164..77451Blg00023.3-exon-Sc0000280-1570713199:77164..77451Branchiostoma lanceolatumexon
Blg00023.3-exon-Sc0000280-1570713199:73766..76793Blg00023.3-exon-Sc0000280-1570713199:73766..76793Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00023.3Blg00023.3-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:73766..77451 -
Properties
Property NameValue
GeneIDBlg00023