Blg00021.3 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00021.3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:176972..184477-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00021.3 ID=Blg00021.3|Name=Blg00021.3|organism=Branchiostoma lanceolatum|type=mRNA|length=7506bp|location=Sequence derived from alignment at Sc0000280:176972..184477- (Branchiostoma lanceolatum)
GTGACCTCCAGCCTTGAGTTATTTTTTGATTAGTAGTCTACCCTTTTAAT AAAAGAGCAACAACACAGTGGTGCAGACAACGAGGTTGGACTAGGTCCTC GATCATTCAGAGTGACGACGCTGTTGTAACGTCCTCACTGGCACCCCCTA CGTCTCTTCTGAAAGACGGTGCAGCCCCGACTAGGATATCATACCCCTCC CGGATTCGAACCCGGGTCTCCCAGTTACCAACTAATTGGAACCAGGAGGC CCAACTAAAAAGTCGCTACCAATTGAGCTACAGGGACATCCATTATGTAG GAGTTCTCTCCAAAGTGAGCAAAGGCATTTGAGAGATTTCCTTTATTTTA GGTCACCTGAGGCACAAGAGGAACTAGTAAGGTGATATTAAGGTACTGTA ATTAGGTTACCTCAGCCCAAACCATGGTTGTACGCGTTTGTTGTGTTCGC GGAACTCACTACCAGGTCGGGCTGCAGGTTGGGAGGGCCTTCCGTGGACA GATCGCCGAGTACTTTGAACGTTACCGCGTCTTCGCCAAACTCCTGGCGA CCATCCAACAAGACGAAGGAAGGAATGTGTACGAAGGTCAGACTATTACG ATCATAATTATCTCCATGAAAAATGGAGATATTGTTTTTGACGTGTCTGT GTGTCTGTCTGTGTGTGTGTGTGTTTCCAGACTATTGTAGTCAGCATAAC TCAAGAACCTCTGGATGGATTACAATGATATTTAGTGTGTGGGCGGCTGT TGTGAAGCCAAAAAAAAGCCACCCCCTGGTATGTGACCTTGGTACTGCAG CAGAACTTCAATTTTTGTATCTTTTGACCTGGACGTGCTATGGTCTTGTT TGTTGTGTATTTCTAATGGGTTGACTTGTTTTAGTCTAAAGGTAAACTAC CTCTCAGGGGCCCCTGTCCATGTGTACACTGCAGTCGCTGTAACTGTTGG CTTGGGCCCAAACAGGCCAAAGTTCATTGTCCCCTCGCGTCGTAATCTCC AAGCAGATGTAAGGAACCGGCTCAGTCGGCTCATTACATTCATGAACATT GGAGGTATATTTTTAGGACAGTTTGATTATTTGTAGCGTATTGGGAGCTA TGTCTTAAGAACATCTGGATAGATTGTGACGCTATTTGGTTTTTGGACGC AAAGGTCAAGGTTGATTTTGGGCCTCCTGGTGGCTTGCCTTGATGCTGCA GCAGAACTTCAGGTTTTTGTATATTTTGCCCTGGACCTGCTGTGTTCTTA ATTTTCGGTGACAGATAACTTGCGATATGGTGTAGGCTTATCGTGTAAGG AAGTACTGGTGTAGGTTTGGGACCCCTAGCGGCTTGTTTAGTACAGTAGC TTTTTAACATCTGCTTGAAGATTTCAGCCTCGCTCCTTAGTAGCCACCCG ACCGTTACGTTCAAATTTCCAAGTAGATGTAAGCAGGGCGTTTATGACAA AACAAAGATAATGTACGATGCTGCCTTAAGCTCGCAACAACCGTTTGATT TACTTTCTATAGATTAGTACAATGCGTGGGGAAACGTTACCTGGATGTCT GACTTTCATCTGTATTATAATGATTATAATGGAAATATTTATTAACTGTC AAACCTGTACAAGTGACCATTTCTACATAATGACCACCTGGTTATTATTA GACAGACTGATAAGTGACCGTCTCTGCATAAAGACCACCAGACCTTGTCC CCTGTCTAATGTGACCATTTTAATTTCTTGTAGTCCATTGTATGCTTTAG TGGTCTCTATAGACAGGTTTGACTGTATTACAATTTTTTTAATCATTGAT TTGAAACTTTCTAGGCTGCCTGAGCCTTATCTACTGTGACCACTGTCTTC TAGTTCCTTGCCTGCTATAGTGGTCTTTATAGTTTTGACTGTATTACAAT ATGTTTTTTAAATCTTTAATTTTAAACTTTTCAGGTTATCTGCGGGCGGC CAAGTCTGCGTACCCCCACTATGTAGATGAGATAGCGGGGATGTCCGAAG GGTCGGACCTCCCGTTCGAACACCTGTTCCTGATGCACTGTCAGCCCGAG TTTGGGCTCATGTTCAAGGAGGAGTGCAAAGTTGAGGCCGTGGCCGAAGG TACAGACACGAATGAATGAATCTGTAATCGACCCTCAAGGGTAGTTAACT TATGCTTTGGTCCAACTTGCGCCGGGGCCCGTCGGGGGTGTAGTCCCGGC CGGGCCCCGAAGCCACAAATTTGTTCCGGTGGACTGCCGGGTACGGGGTG GGGGGGTACCTCCCGGTGCTCGCACGATTAGCTCACGGCGACTATTTGTT ACCGGGTCCCGCGTTCAAGTTAAGTCTGATTTAAATTGATTCGGGAGCCA TTTTGTTTCTGGAGGTCACGTATTTCACACGTGCTTCGCGCGTCAGTGTG ACCGCAAAGAAAAATTGGCGCAAAGTCTCAAAGTTGCCGTAGTAATTTTT CGCAAACAGGCGCAGTCTAGTGTGATATATATATACCTGCTAGAACAGGC GCAAATAAAGACCCGGGCTTTTCAGCTTATGATGTCCTTTTATGTCCGTT ACAGATCAGTTTTTTTTCACGCAACTGTTCATAGGTCACTATCTTAGTAT TAAAACACAAATATCAGAACGCCATTTATTTCAAACTTTGAATCAAAGAA GGTAAAGATATAGAAACTGAAGTAACTGAATGGTTAAAAGTAGATTCATG GTTGATCAAGTTGATTTGGTCGTTGATCGTGCACCACCGTTTAATTTCTT AAAAAGAAAAAAGAAGGATCAGCTCCGATATGTGGTTTTTAAATAAGACG GTGATAGTGATGTCGAACCAGCTTTCTTTGGTCGTGACGGAGAAGACAGA GGCTACAGTATATGGTTAATTCTACCGGAGAAATTCCTCAAGCTCTTTTC GACAAGCATAATATGATCAATGGACCACGGCTTGACGTCCCGTCCTTAAG CCCCTCTCACTGCGGCCGATCGAATTGACAAAGCACACAACAAATTTCAT CGACAAAAAACGAATCTTTTTAAGCTTTGAGTGTTTTGTTGTCTTTTGGT CATACTTGTACGTTTTGAATGATATTCCCATTATAAAGTCAAAGGTAACA CAAATCCAGTTTTGGAGGCAGCGACGCCGCCAGCGTGCGGCGGGTCCAGT GAGAGGGGACTACAGCCATTTCCTGTAGCGTACATGTCGGGTGAGCGACA ACATACGGGGTTCGGCCTCCCTATCTTTTAGTCGCTGACCACTAGACTAT ACACGCTTCATATAGTTGAATGAGGTTTTTGAAGTCTCGTTTATGCTACA GTCCCATTTCCAATCCGGGACCCCGCCCTGCAAAAACGAAAAATAAAAGA AATGCATAACAAGACAAAAAACTGATGGTTAGGAATAATTTGTTTACGTT TTGTGTTCTTTGTTGTCTTTTTTATCATACTCATCGTTCCCACAAGCTGC CCGACCGGACCCCGCTTTGGAAATGGGACTGTAGCATTAATCATGCTACT TTTTCTACCATTGCCCAGGTTGTACAACCGTGTTTCTTAACGCCAAGAAC GGGCCCAGAATCTTGGCTCACAACGAAGACGGCGACTCCCTCATCAAAGA CCTGGGCTACGTGGTAGTCGCTAGTATAGACCCCTACGAACTGCCAAACG GAGAGGTTATTCCCGCAGAGGGCTTTACCGCTTTCTGCTATCCCGGGCTA CTGGCTGGGAATGCTTACGGATTCAACCAACATGGTTTGTGCAGCACCGG CAACTTTCAACTGGCCAAATGTGTGGAGCGAGACAAAATACGTAAGTACA GATTTTTTTATGTATTCTATTTGCCTTAGGCCCAGCAAGTAAATTTTATG GATGACATCCTCTGCAGACTCCACATTTGGTGCGCACGGACGGAAAAAAC AAACAAGGCGGGCAAAAAAAACACCCCATCTAACCCTCGTGAGACAGGAA ACAACAGACGATAAACGAGTGAGTGCTGTTGCATAGCTGTTTGTTTGTTT GTTTGTTTGTTTAATTGATTGATCTGTTATGACTTATGTCTCACTGTTTG ACGCATATCTAGCTCAGCGGTTCTTGTGCCGCGCCCTGCTGTCAGCTGCG ACCGTGGAACAGGCCGTGGACATGCTCAGGACAGACCGTGTAGGGATGGC CAGCGGATATTCTTACAACATCGTCAGCACCAAGGACAGGTGCAACATGT ACTCGGTGGAGGTGGCTCCGGCGGAGGGAGAAGAAAAAAACATGGTTTCT GTTCACGTCATTGCGTCTGGAGACGGGCAGACTGACGGATGCTACAATCA TTACAATCTGTACGTTTCTCTAAGCAGATGTAGGGGGGAACATTTCTAAA GTTTTCAATCCGACCATCCCGACATCTACCGGGACTAGCATTCACATGAC GAAGCTCATCAAACTAGAAAGGCAACATTTTCGAGAAAATGCAGGATATT CCCCTTCCGTTACCTACACCTCAAATATGACATCCTTAGCATTAACTGTA AAGGAATAATGAGTTTTCTGTATAAATTATGGAAATGAGGTCCTCATTAG CATAAGTTATGTCGAGGAGAGGAATATAACAAGAAGTGCAGCTTGATAAA GCAAATAACAAAAACTTGCACGTTGTTGCAAGTGAGAAAGGGACAAGTGA CAAATATGCACATAACTGAAACATAACAATGCATTTGATCTTACTTCATC TTGCTTTCATTATCTCAGGTACGACCATCTGGATACGCCGCATTGGAGGG ATCCTAGTTCTGACCACAGGAAAGCCCGGGCTGATGTAGTAGGGCCACTC TCGACTAAAGAGGATGTTCTGAAATTCATGGGTACGATGATAAGAAAGAT GGGAAAGGAAATGTAAATGTTGTTTGGGAAGATATGCTTCAATGGACGTG ACTTCATAGTAATGTATTACAACTTAGTCTCCAAGCAAATGTAAGGAGAC GCCTATTCTCTGTTTTAGCCTGCTGTTGCTCGCTGTAGAATAAGACGTTG AAAAAAACAACGGCGTAAAACACGGTTCCTTACATCTGCTTGGAGATTGG CACAACCAGCAGGTAAACGCGTGTATACAAGTCCGTTAAACTTAGCAAAG AAGTGTGCTTAGTTCATGAAACCTCTAATTGGGACATCGCCGTCCCTTCT GATAATAGTCTTTTAACTTTGCGTATTATAGTCGTTATTGTATAGTCGTA ATTGTATTGGCCATACTTGTATTTTGGTCTGAGCTGTAAGTTGCTCCCAC AATCAGAATTGATAAAACCGAGACTTATTTTGCTACATGCAGGCTGCTAT AGTGCGTAAAGTGTATTCTGTGATGAAAATTCCATTGCAACCAATCATAT TTTGCATAGTACTTTGAATATTTTGTTAATTCCTGTGTTTTGACTACTGC CGACAGGGGATACGGAGGACCCAGAGTATCCGGTTTACAGGTCCCAGACT GGAAATGACGTGTTTATGACGACAACAACTGGTAAGCTTGAACAATGTGT CTCAACGTTACACCACGACATATACAAACACAGGTAGACACAACTACCTC CTTGATGGTGCGCCAAATAAAAAGAATCTGATTTAATTTAATACTCAGAC GTAGGTTTTCTTATACTTCGGGGAAATGTATGATACAAAATAAATTAACT AACTGGAAGATTCCTCTGAAGAGTCAAACGTTTCAGGTAGCATCGACAAT TGAAAATTCGGAAATAATGGACCGGTGCCCCTTTTCTAAACTCCGGCGCC ATTTTGAGAACTTCTCTCGCGAGAGCATAATCTGGCGGGAACGCGCGTGA TTTGGATAGATTAGGTTCTCTGTGAAGTATAACGTCTGTATTAGCTGTGT TTAATGAACTTTGAACATCTGGTTTCTTTTTTTCTCCGGTCTCCGCCACA GGTGTGTTTGACCTTGAAGCAGGTGTTCTGGAAGTCTTCACCGGTAATCC GGCCAAGGGAGAAGAGCCTGACGTCATCTTCGTTCTTCCGGTATAGTGTC TACCAGACTCCATCGGTTGTTTTAGAAAATAGTACAAAAGTGCATTCTGA ATGATACGCAAACGCAGTCTGAATGAAACGCCACTGAGTTACCCGGTCGT ACTTCAGTCATCCTCCCAGCAGACCCGATATGTTCGTTACCTCCCATAGC AGCCCTACCCTTCCGAGCCCCTGAACGCGGTTCTGGCGACGTCACCACCA AAACAGCTTTCAGCCAATCAGAGGGTTTGCTAAAGCTCATTTTGAGCAAA GCCGCAAAGGACGCTGGGAAGCTATCAGCCAATCAGCTTACGTCTTACAT CGCTACTTAATCATTCATGAGCAACTTACGACTGTTTGTGCCAAATAAGG CTAGCTCATCAATTATTTATGAGCAACTGTCAGTGACGTCCCCAAAGGCC AAAATCTCCGTTCAAAAGATCAGGGCTGAGACCGGGAGGGTTTGCCGAAC ATTTCCCTTGCGGGTTTCAGCGCTGATAAAGGAGGCCAGGGTGACTTCAT TTTGCAACCTATACTCCTATTGCCTTCTAACTCCTCTGGAATATTATTCA TTTGATCAAATCCTACTATTTTCCTAGCAACCCATTGATTCTGGTGGAGA CTACTTCCAGTTTAGAGATAAAACATCTTTATTTGGCATGAAGTAAACTA CGCCATACCAATTGAATTTGACTCAAGTACATACAGCATGATTATGGTAT ACTTCAAATCTGTTATTACTATATAAGGTCTATTAATAAATAGCTGTAAA GGCGTGGTTATTGACAGAAACATCCTATCAGTAGTGCGAAAAGTTTTATT GACAGGGCAAGCCTGTCAACAATGCCAACAAAATTCTTATCCTGTCGGTA GTGCCAAACATTCAGGAAAATCCTGTCAATAGTGCCAAAAGATTATTATC GACAGGAACATTCTGTCAATAGTGCAAAAATTCTTATTGACAGGAACATC CTATCGATAGTTTAAAGAAATTGTCTTGGCCTAGTTGTAGAAAGTGTACC TCAAATAAAGTTGAACATGAAATATATTTTATTTCATACTGTCTCTTCTA TGAAAACGAAAGAAGTGGGCTCTCTATAGAAGCCGCTGAATTGCACTCTC TCCGCAAAAGAAGTCAAACCTAACTAATTTTAGAATTGACATTTGAAATA CAATAGTCATATACAGTACTGTTCTTCATTCGCTGTTTTTCCCCATTTTC TAATACTGTACTTGCAATTAGCCTTTAGCTTTGGGAAAGAACATGCAATT AACTTTAATAATTTTTATGAATATCCTTGTTATCCGAAGACAATGAGCGA TGTGTTGTAGTCTACTGAAGTTGTTCCAAACAACATGGTTAAGGTTTACA ATATACGTTCCTTTTGGATAATTAATAAAGTTCCAGATCAATTTCTGGGT CAGAGCAACAGCAGAATTAAGTTGCTAAGGGTGGAAATTGATTAACAACT ATTCACACAAACACAACAGACATTATTTTCAACATCGGATCTAGATTTCC CAAGAG

Coding sequence (CDS) from alignment at Sc0000280:176972..184477-

>Blg00021.3 ID=Blg00021.3|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=888bp|location=Sequence derived from alignment at Sc0000280:176972..184477- (Branchiostoma lanceolatum)
ATGGTTGTACGCGTTTGTTGTGTTCGCGGAACTCACTACCAGGTCGGGCT
GCAGGTTGGGAGGGCCTTCCGTGGACAGATCGCCGAGTACTTTGAACGTT
ACCGCGTCTTCGCCAAACTCCTGGCGACCATCCAACAAGACGAAGGAAGG
AATGTGTACGAAGGTTATCTGCGGGCGGCCAAGTCTGCGTACCCCCACTA
TGTAGATGAGATAGCGGGGATGTCCGAAGGGTCGGACCTCCCGTTCGAAC
ACCTGTTCCTGATGCACTGTCAGCCCGAGTTTGGGCTCATGTTCAAGGAG
GAGTGCAAAGTTGAGGCCGTGGCCGAAGGTTGTACAACCGTGTTTCTTAA
CGCCAAGAACGGGCCCAGAATCTTGGCTCACAACGAAGACGGCGACTCCC
TCATCAAAGACCTGGGCTACGTGGTAGTCGCTAGTATAGACCCCTACGAA
CTGCCAAACGGAGAGGTTATTCCCGCAGAGGGCTTTACCGCTTTCTGCTA
TCCCGGGCTACTGGCTGGGAATGCTTACGGATTCAACCAACATGGTTTGT
GCAGCACCGGCAACTTTCAACTGGCCAAATGTGTGGAGCGAGACAAAATA
CCTCAGCGGTTCTTGTGCCGCGCCCTGCTGTCAGCTGCGACCGTGGAACA
GGCCGTGGACATGCTCAGGACAGACCGTGTAGGGATGGCCAGCGGATATT
CTTACAACATCGTCAGCACCAAGGACAGGTGCAACATGTACTCGGTGGAG
GTGGCTCCGGCGGAGGGAGAAGAAAAAAACATGGTTTCTGTTCACGTCAT
TGCGTCTGGAGACGGGCAGACTGACGGATGCTACAATCATTACAATCTGT
ACGTTTCTCTAAGCAGATGTAGGGGGGAACATTTCTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00021.3Blg00021.3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00021.3-exon-Sc0000280-1570713199:183892..184477Blg00021.3-exon-Sc0000280-1570713199:183892..184477Branchiostoma lanceolatumexon
Blg00021.3-exon-Sc0000280-1570713199:182379..182543Blg00021.3-exon-Sc0000280-1570713199:182379..182543Branchiostoma lanceolatumexon
Blg00021.3-exon-Sc0000280-1570713199:180687..180959Blg00021.3-exon-Sc0000280-1570713199:180687..180959Branchiostoma lanceolatumexon
Blg00021.3-exon-Sc0000280-1570713199:179647..180415Blg00021.3-exon-Sc0000280-1570713199:179647..180415Branchiostoma lanceolatumexon
Blg00021.3-exon-Sc0000280-1570713199:178997..179071Blg00021.3-exon-Sc0000280-1570713199:178997..179071Branchiostoma lanceolatumexon
Blg00021.3-exon-Sc0000280-1570713199:176972..178576Blg00021.3-exon-Sc0000280-1570713199:176972..178576Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:176972..184477 -
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00021