Blg00021.2 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00021.2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:176972..184211-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00021.2 ID=Blg00021.2|Name=Blg00021.2|organism=Branchiostoma lanceolatum|type=mRNA|length=7240bp|location=Sequence derived from alignment at Sc0000280:176972..184211- (Branchiostoma lanceolatum)
TACCAATTGAGCTACAGGGACATCCATTATGTAGGAGTTCTCTCCAAAGT GAGCAAAGGCATTTGAGAGATTTCCTTTATTTTAGGTCACCTGAGGCACA AGAGGAACTAGTAAGGTGATATTAAGGTACTGTAATTAGGTTACCTCAGC CCAAACCATGGTTGTACGCGTTTGTTGTGTTCGCGGAACTCACTACCAGG TCGGGCTGCAGGTTGGGAGGGCCTTCCGTGGACAGATCGCCGAGTACTTT GAACGTTACCGCGTCTTCGCCAAACTCCTGGCGACCATCCAACAAGACGA AGGAAGGAATGTGTACGAAGGTCAGACTATTACGATCATAATTATCTCCA TGAAAAATGGAGATATTGTTTTTGACGTGTCTGTGTGTCTGTCTGTGTGT GTGTGTGTTTCCAGACTATTGTAGTCAGCATAACTCAAGAACCTCTGGAT GGATTACAATGATATTTAGTGTGTGGGCGGCTGTTGTGAAGCCAAAAAAA AGCCACCCCCTGGTATGTGACCTTGGTACTGCAGCAGAACTTCAATTTTT GTATCTTTTGACCTGGACGTGCTATGGTCTTGTTTGTTGTGTATTTCTAA TGGGTTGACTTGTTTTAGTCTAAAGGTAAACTACCTCTCAGGGGCCCCTG TCCATGTGTACACTGCAGTCGCTGTAACTGTTGGCTTGGGCCCAAACAGG CCAAAGTTCATTGTCCCCTCGCGTCGTAATCTCCAAGCAGATGTAAGGAA CCGGCTCAGTCGGCTCATTACATTCATGAACATTGGAGGTATATTTTTAG GACAGTTTGATTATTTGTAGCGTATTGGGAGCTATGTCTTAAGAACATCT GGATAGATTGTGACGCTATTTGGTTTTTGGACGCAAAGGTCAAGGTTGAT TTTGGGCCTCCTGGTGGCTTGCCTTGATGCTGCAGCAGAACTTCAGGTTT TTGTATATTTTGCCCTGGACCTGCTGTGTTCTTAATTTTCGGTGACAGAT AACTTGCGATATGGTGTAGGCTTATCGTGTAAGGAAGTACTGGTGTAGGT TTGGGACCCCTAGCGGCTTGTTTAGTACAGTAGCTTTTTAACATCTGCTT GAAGATTTCAGCCTCGCTCCTTAGTAGCCACCCGACCGTTACGTTCAAAT TTCCAAGTAGATGTAAGCAGGGCGTTTATGACAAAACAAAGATAATGTAC GATGCTGCCTTAAGCTCGCAACAACCGTTTGATTTACTTTCTATAGATTA GTACAATGCGTGGGGAAACGTTACCTGGATGTCTGACTTTCATCTGTATT ATAATGATTATAATGGAAATATTTATTAACTGTCAAACCTGTACAAGTGA CCATTTCTACATAATGACCACCTGGTTATTATTAGACAGACTGATAAGTG ACCGTCTCTGCATAAAGACCACCAGACCTTGTCCCCTGTCTAATGTGACC ATTTTAATTTCTTGTAGTCCATTGTATGCTTTAGTGGTCTCTATAGACAG GTTTGACTGTATTACAATTTTTTTAATCATTGATTTGAAACTTTCTAGGC TGCCTGAGCCTTATCTACTGTGACCACTGTCTTCTAGTTCCTTGCCTGCT ATAGTGGTCTTTATAGTTTTGACTGTATTACAATATGTTTTTTAAATCTT TAATTTTAAACTTTTCAGGTTATCTGCGGGCGGCCAAGTCTGCGTACCCC CACTATGTAGATGAGATAGCGGGGATGTCCGAAGGGTCGGACCTCCCGTT CGAACACCTGTTCCTGATGCACTGTCAGCCCGAGTTTGGGCTCATGTTCA AGGAGGAGTGCAAAGTTGAGGCCGTGGCCGAAGGTACAGACACGAATGAA TGAATCTGTAATCGACCCTCAAGGGTAGTTAACTTATGCTTTGGTCCAAC TTGCGCCGGGGCCCGTCGGGGGTGTAGTCCCGGCCGGGCCCCGAAGCCAC AAATTTGTTCCGGTGGACTGCCGGGTACGGGGTGGGGGGGTACCTCCCGG TGCTCGCACGATTAGCTCACGGCGACTATTTGTTACCGGGTCCCGCGTTC AAGTTAAGTCTGATTTAAATTGATTCGGGAGCCATTTTGTTTCTGGAGGT CACGTATTTCACACGTGCTTCGCGCGTCAGTGTGACCGCAAAGAAAAATT GGCGCAAAGTCTCAAAGTTGCCGTAGTAATTTTTCGCAAACAGGCGCAGT CTAGTGTGATATATATATACCTGCTAGAACAGGCGCAAATAAAGACCCGG GCTTTTCAGCTTATGATGTCCTTTTATGTCCGTTACAGATCAGTTTTTTT TCACGCAACTGTTCATAGGTCACTATCTTAGTATTAAAACACAAATATCA GAACGCCATTTATTTCAAACTTTGAATCAAAGAAGGTAAAGATATAGAAA CTGAAGTAACTGAATGGTTAAAAGTAGATTCATGGTTGATCAAGTTGATT TGGTCGTTGATCGTGCACCACCGTTTAATTTCTTAAAAAGAAAAAAGAAG GATCAGCTCCGATATGTGGTTTTTAAATAAGACGGTGATAGTGATGTCGA ACCAGCTTTCTTTGGTCGTGACGGAGAAGACAGAGGCTACAGTATATGGT TAATTCTACCGGAGAAATTCCTCAAGCTCTTTTCGACAAGCATAATATGA TCAATGGACCACGGCTTGACGTCCCGTCCTTAAGCCCCTCTCACTGCGGC CGATCGAATTGACAAAGCACACAACAAATTTCATCGACAAAAAACGAATC TTTTTAAGCTTTGAGTGTTTTGTTGTCTTTTGGTCATACTTGTACGTTTT GAATGATATTCCCATTATAAAGTCAAAGGTAACACAAATCCAGTTTTGGA GGCAGCGACGCCGCCAGCGTGCGGCGGGTCCAGTGAGAGGGGACTACAGC CATTTCCTGTAGCGTACATGTCGGGTGAGCGACAACATACGGGGTTCGGC CTCCCTATCTTTTAGTCGCTGACCACTAGACTATACACGCTTCATATAGT TGAATGAGGTTTTTGAAGTCTCGTTTATGCTACAGTCCCATTTCCAATCC GGGACCCCGCCCTGCAAAAACGAAAAATAAAAGAAATGCATAACAAGACA AAAAACTGATGGTTAGGAATAATTTGTTTACGTTTTGTGTTCTTTGTTGT CTTTTTTATCATACTCATCGTTCCCACAAGCTGCCCGACCGGACCCCGCT TTGGAAATGGGACTGTAGCATTAATCATGCTACTTTTTCTACCATTGCCC AGGTTGTACAACCGTGTTTCTTAACGCCAAGAACGGGCCCAGAATCTTGG CTCACAACGAAGACGGCGACTCCCTCATCAAAGACCTGGGCTACGTGGTA GTCGCTAGTATAGACCCCTACGAACTGCCAAACGGAGAGGTTATTCCCGC AGAGGGCTTTACCGCTTTCTGCTATCCCGGGCTACTGGCTGGGAATGCTT ACGGATTCAACCAACATGGTTTGTGCAGCACCGGCAACTTTCAACTGGCC AAATGTGTGGAGCGAGACAAAATACGTAAGTACAGATTTTTTTATGTATT CTATTTGCCTTAGGCCCAGCAAGTAAATTTTATGGATGACATCCTCTGCA GACTCCACATTTGGTGCGCACGGACGGAAAAAACAAACAAGGCGGGCAAA AAAAACACCCCATCTAACCCTCGTGAGACAGGAAACAACAGACGATAAAC GAGTGAGTGCTGTTGCATAGCTGTTTGTTTGTTTGTTTGTTTGTTTAATT GATTGATCTGTTATGACTTATGTCTCACTGTTTGACGCATATCTAGCTCA GCGGTTCTTGTGCCGCGCCCTGCTGTCAGCTGCGACCGTGGAACAGGCCG TGGACATGCTCAGGACAGACCGTGTAGGGATGGCCAGCGGATATTCTTAC AACATCGTCAGCACCAAGGACAGGTGCAACATGTACTCGGTGGAGGTGGC TCCGGCGGAGGGAGAAGAAAAAAACATGGTTTCTGTTCACGTCATTGCGT CTGGAGACGGGCAGACTGACGGATGCTACAATCATTACAATCTGTACGTT TCTCTAAGCAGATGTAGGGGGGAACATTTCTAAAGTTTTCAATCCGACCA TCCCGACATCTACCGGGACTAGCATTCACATGACGAAGCTCATCAAACTA GAAAGGCAACATTTTCGAGAAAATGCAGGATATTCCCCTTCCGTTACCTA CACCTCAAATATGACATCCTTAGCATTAACTGTAAAGGAATAATGAGTTT TCTGTATAAATTATGGAAATGAGGTCCTCATTAGCATAAGTTATGTCGAG GAGAGGAATATAACAAGAAGTGCAGCTTGATAAAGCAAATAACAAAAACT TGCACGTTGTTGCAAGTGAGAAAGGGACAAGTGACAAATATGCACATAAC TGAAACATAACAATGCATTTGATCTTACTTCATCTTGCTTTCATTATCTC AGGTACGACCATCTGGATACGCCGCATTGGAGGGATCCTAGTTCTGACCA CAGGAAAGCCCGGGCTGATGTAGTAGGGCCACTCTCGACTAAAGAGGATG TTCTGAAATTCATGGGTACGATGATAAGAAAGATGGGAAAGGAAATGTAA ATGTTGTTTGGGAAGATATGCTTCAATGGACGTGACTTCATAGTAATGTA TTACAACTTAGTCTCCAAGCAAATGTAAGGAGACGCCTATTCTCTGTTTT AGCCTGCTGTTGCTCGCTGTAGAATAAGACGTTGAAAAAAACAACGGCGT AAAACACGGTTCCTTACATCTGCTTGGAGATTGGCACAACCAGCAGGTAA ACGCGTGTATACAAGTCCGTTAAACTTAGCAAAGAAGTGTGCTTAGTTCA TGAAACCTCTAATTGGGACATCGCCGTCCCTTCTGATAATAGTCTTTTAA CTTTGCGTATTATAGTCGTTATTGTATAGTCGTAATTGTATTGGCCATAC TTGTATTTTGGTCTGAGCTGTAAGTTGCTCCCACAATCAGAATTGATAAA ACCGAGACTTATTTTGCTACATGCAGGCTGCTATAGTGCGTAAAGTGTAT TCTGTGATGAAAATTCCATTGCAACCAATCATATTTTGCATAGTACTTTG AATATTTTGTTAATTCCTGTGTTTTGACTACTGCCGACAGGGGATACGGA GGACCCAGAGTATCCGGTTTACAGGTCCCAGACTGGAAATGACGTGTTTA TGACGACAACAACTGGTAAGCTTGAACAATGTGTCTCAACGTTACACCAC GACATATACAAACACAGGTAGACACAACTACCTCCTTGATGGTGCGCCAA ATAAAAAGAATCTGATTTAATTTAATACTCAGACGTAGGTTTTCTTATAC TTCGGGGAAATGTATGATACAAAATAAATTAACTAACTGGAAGATTCCTC TGAAGAGTCAAACGTTTCAGGTAGCATCGACAATTGAAAATTCGGAAATA ATGGACCGGTGCCCCTTTTCTAAACTCCGGCGCCATTTTGAGAACTTCTC TCGCGAGAGCATAATCTGGCGGGAACGCGCGTGATTTGGATAGATTAGGT TCTCTGTGAAGTATAACGTCTGTATTAGCTGTGTTTAATGAACTTTGAAC ATCTGGTTTCTTTTTTTCTCCGGTCTCCGCCACAGGTGTGTTTGACCTTG AAGCAGGTGTTCTGGAAGTCTTCACCGGTAATCCGGCCAAGGGAGAAGAG CCTGACGTCATCTTCGTTCTTCCGGTATAGTGTCTACCAGACTCCATCGG TTGTTTTAGAAAATAGTACAAAAGTGCATTCTGAATGATACGCAAACGCA GTCTGAATGAAACGCCACTGAGTTACCCGGTCGTACTTCAGTCATCCTCC CAGCAGACCCGATATGTTCGTTACCTCCCATAGCAGCCCTACCCTTCCGA GCCCCTGAACGCGGTTCTGGCGACGTCACCACCAAAACAGCTTTCAGCCA ATCAGAGGGTTTGCTAAAGCTCATTTTGAGCAAAGCCGCAAAGGACGCTG GGAAGCTATCAGCCAATCAGCTTACGTCTTACATCGCTACTTAATCATTC ATGAGCAACTTACGACTGTTTGTGCCAAATAAGGCTAGCTCATCAATTAT TTATGAGCAACTGTCAGTGACGTCCCCAAAGGCCAAAATCTCCGTTCAAA AGATCAGGGCTGAGACCGGGAGGGTTTGCCGAACATTTCCCTTGCGGGTT TCAGCGCTGATAAAGGAGGCCAGGGTGACTTCATTTTGCAACCTATACTC CTATTGCCTTCTAACTCCTCTGGAATATTATTCATTTGATCAAATCCTAC TATTTTCCTAGCAACCCATTGATTCTGGTGGAGACTACTTCCAGTTTAGA GATAAAACATCTTTATTTGGCATGAAGTAAACTACGCCATACCAATTGAA TTTGACTCAAGTACATACAGCATGATTATGGTATACTTCAAATCTGTTAT TACTATATAAGGTCTATTAATAAATAGCTGTAAAGGCGTGGTTATTGACA GAAACATCCTATCAGTAGTGCGAAAAGTTTTATTGACAGGGCAAGCCTGT CAACAATGCCAACAAAATTCTTATCCTGTCGGTAGTGCCAAACATTCAGG AAAATCCTGTCAATAGTGCCAAAAGATTATTATCGACAGGAACATTCTGT CAATAGTGCAAAAATTCTTATTGACAGGAACATCCTATCGATAGTTTAAA GAAATTGTCTTGGCCTAGTTGTAGAAAGTGTACCTCAAATAAAGTTGAAC ATGAAATATATTTTATTTCATACTGTCTCTTCTATGAAAACGAAAGAAGT GGGCTCTCTATAGAAGCCGCTGAATTGCACTCTCTCCGCAAAAGAAGTCA AACCTAACTAATTTTAGAATTGACATTTGAAATACAATAGTCATATACAG TACTGTTCTTCATTCGCTGTTTTTCCCCATTTTCTAATACTGTACTTGCA ATTAGCCTTTAGCTTTGGGAAAGAACATGCAATTAACTTTAATAATTTTT ATGAATATCCTTGTTATCCGAAGACAATGAGCGATGTGTTGTAGTCTACT GAAGTTGTTCCAAACAACATGGTTAAGGTTTACAATATACGTTCCTTTTG GATAATTAATAAAGTTCCAGATCAATTTCTGGGTCAGAGCAACAGCAGAA TTAAGTTGCTAAGGGTGGAAATTGATTAACAACTATTCACACAAACACAA CAGACATTATTTTCAACATCGGATCTAGATTTCCCAAGAG

Coding sequence (CDS) from alignment at Sc0000280:176972..184211-

>Blg00021.2 ID=Blg00021.2|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=996bp|location=Sequence derived from alignment at Sc0000280:176972..184211- (Branchiostoma lanceolatum)
ATGGTTGTACGCGTTTGTTGTGTTCGCGGAACTCACTACCAGGTCGGGCT
GCAGGTTGGGAGGGCCTTCCGTGGACAGATCGCCGAGTACTTTGAACGTT
ACCGCGTCTTCGCCAAACTCCTGGCGACCATCCAACAAGACGAAGGAAGG
AATGTGTACGAAGGTTATCTGCGGGCGGCCAAGTCTGCGTACCCCCACTA
TGTAGATGAGATAGCGGGGATGTCCGAAGGGTCGGACCTCCCGTTCGAAC
ACCTGTTCCTGATGCACTGTCAGCCCGAGTTTGGGCTCATGTTCAAGGAG
GAGTGCAAAGTTGAGGCCGTGGCCGAAGGTTGTACAACCGTGTTTCTTAA
CGCCAAGAACGGGCCCAGAATCTTGGCTCACAACGAAGACGGCGACTCCC
TCATCAAAGACCTGGGCTACGTGGTAGTCGCTAGTATAGACCCCTACGAA
CTGCCAAACGGAGAGGTTATTCCCGCAGAGGGCTTTACCGCTTTCTGCTA
TCCCGGGCTACTGGCTGGGAATGCTTACGGATTCAACCAACATGGTTTGT
GCAGCACCGGCAACTTTCAACTGGCCAAATGTGTGGAGCGAGACAAAATA
CCTCAGCGGTTCTTGTGCCGCGCCCTGCTGTCAGCTGCGACCGTGGAACA
GGCCGTGGACATGCTCAGGACAGACCGTGTAGGGATGGCCAGCGGATATT
CTTACAACATCGTCAGCACCAAGGACAGGTGCAACATGTACTCGGTGGAG
GTGGCTCCGGCGGAGGGAGAAGAAAAAAACATGGTTTCTGTTCACGTCAT
TGCGTCTGGAGACGGGCAGACTGACGGATGCTACAATCATTACAATCTGT
ACGACCATCTGGATACGCCGCATTGGAGGGATCCTAGTTCTGACCACAGG
AAAGCCCGGGCTGATGTAGTAGGGCCACTCTCGACTAAAGAGGATGTTCT
GAAATTCATGGGTACGATGATAAGAAAGATGGGAAAGGAAATGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00021.2Blg00021.2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00021.2-exon-Sc0000280-1570713199:183892..184211Blg00021.2-exon-Sc0000280-1570713199:183892..184211Branchiostoma lanceolatumexon
Blg00021.2-exon-Sc0000280-1570713199:182379..182543Blg00021.2-exon-Sc0000280-1570713199:182379..182543Branchiostoma lanceolatumexon
Blg00021.2-exon-Sc0000280-1570713199:180687..180959Blg00021.2-exon-Sc0000280-1570713199:180687..180959Branchiostoma lanceolatumexon
Blg00021.2-exon-Sc0000280-1570713199:180169..180415Blg00021.2-exon-Sc0000280-1570713199:180169..180415Branchiostoma lanceolatumexon
Blg00021.2-exon-Sc0000280-1570713199:178997..179759Blg00021.2-exon-Sc0000280-1570713199:178997..179759Branchiostoma lanceolatumexon
Blg00021.2-exon-Sc0000280-1570713199:176972..178576Blg00021.2-exon-Sc0000280-1570713199:176972..178576Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:176972..184211 -
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00021