Blg00021.1 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00021.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:176972..184478-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00021.1 ID=Blg00021.1|Name=Blg00021.1|organism=Branchiostoma lanceolatum|type=mRNA|length=7507bp|location=Sequence derived from alignment at Sc0000280:176972..184478- (Branchiostoma lanceolatum)
TGTGACCTCCAGCCTTGAGTTATTTTTTGATTAGTAGTCTACCCTTTTAA TAAAAGAGCAACAACACAGTGGTGCAGACAACGAGGTTGGACTAGGTCCT CGATCATTCAGAGTGACGACGCTGTTGTAACGTCCTCACTGGCACCCCCT ACGTCTCTTCTGAAAGACGGTGCAGCCCCGACTAGGATATCATACCCCTC CCGGATTCGAACCCGGGTCTCCCAGTTACCAACTAATTGGAACCAGGAGG CCCAACTAAAAAGTCGCTACCAATTGAGCTACAGGGACATCCATTATGTA GGAGTTCTCTCCAAAGTGAGCAAAGGCATTTGAGAGATTTCCTTTATTTT AGGTCACCTGAGGCACAAGAGGAACTAGTAAGGTGATATTAAGGTACTGT AATTAGGTTACCTCAGCCCAAACCATGGTTGTACGCGTTTGTTGTGTTCG CGGAACTCACTACCAGGTCGGGCTGCAGGTTGGGAGGGCCTTCCGTGGAC AGATCGCCGAGTACTTTGAACGTTACCGCGTCTTCGCCAAACTCCTGGCG ACCATCCAACAAGACGAAGGAAGGAATGTGTACGAAGGTCAGACTATTAC GATCATAATTATCTCCATGAAAAATGGAGATATTGTTTTTGACGTGTCTG TGTGTCTGTCTGTGTGTGTGTGTGTTTCCAGACTATTGTAGTCAGCATAA CTCAAGAACCTCTGGATGGATTACAATGATATTTAGTGTGTGGGCGGCTG TTGTGAAGCCAAAAAAAAGCCACCCCCTGGTATGTGACCTTGGTACTGCA GCAGAACTTCAATTTTTGTATCTTTTGACCTGGACGTGCTATGGTCTTGT TTGTTGTGTATTTCTAATGGGTTGACTTGTTTTAGTCTAAAGGTAAACTA CCTCTCAGGGGCCCCTGTCCATGTGTACACTGCAGTCGCTGTAACTGTTG GCTTGGGCCCAAACAGGCCAAAGTTCATTGTCCCCTCGCGTCGTAATCTC CAAGCAGATGTAAGGAACCGGCTCAGTCGGCTCATTACATTCATGAACAT TGGAGGTATATTTTTAGGACAGTTTGATTATTTGTAGCGTATTGGGAGCT ATGTCTTAAGAACATCTGGATAGATTGTGACGCTATTTGGTTTTTGGACG CAAAGGTCAAGGTTGATTTTGGGCCTCCTGGTGGCTTGCCTTGATGCTGC AGCAGAACTTCAGGTTTTTGTATATTTTGCCCTGGACCTGCTGTGTTCTT AATTTTCGGTGACAGATAACTTGCGATATGGTGTAGGCTTATCGTGTAAG GAAGTACTGGTGTAGGTTTGGGACCCCTAGCGGCTTGTTTAGTACAGTAG CTTTTTAACATCTGCTTGAAGATTTCAGCCTCGCTCCTTAGTAGCCACCC GACCGTTACGTTCAAATTTCCAAGTAGATGTAAGCAGGGCGTTTATGACA AAACAAAGATAATGTACGATGCTGCCTTAAGCTCGCAACAACCGTTTGAT TTACTTTCTATAGATTAGTACAATGCGTGGGGAAACGTTACCTGGATGTC TGACTTTCATCTGTATTATAATGATTATAATGGAAATATTTATTAACTGT CAAACCTGTACAAGTGACCATTTCTACATAATGACCACCTGGTTATTATT AGACAGACTGATAAGTGACCGTCTCTGCATAAAGACCACCAGACCTTGTC CCCTGTCTAATGTGACCATTTTAATTTCTTGTAGTCCATTGTATGCTTTA GTGGTCTCTATAGACAGGTTTGACTGTATTACAATTTTTTTAATCATTGA TTTGAAACTTTCTAGGCTGCCTGAGCCTTATCTACTGTGACCACTGTCTT CTAGTTCCTTGCCTGCTATAGTGGTCTTTATAGTTTTGACTGTATTACAA TATGTTTTTTAAATCTTTAATTTTAAACTTTTCAGGTTATCTGCGGGCGG CCAAGTCTGCGTACCCCCACTATGTAGATGAGATAGCGGGGATGTCCGAA GGGTCGGACCTCCCGTTCGAACACCTGTTCCTGATGCACTGTCAGCCCGA GTTTGGGCTCATGTTCAAGGAGGAGTGCAAAGTTGAGGCCGTGGCCGAAG GTACAGACACGAATGAATGAATCTGTAATCGACCCTCAAGGGTAGTTAAC TTATGCTTTGGTCCAACTTGCGCCGGGGCCCGTCGGGGGTGTAGTCCCGG CCGGGCCCCGAAGCCACAAATTTGTTCCGGTGGACTGCCGGGTACGGGGT GGGGGGGTACCTCCCGGTGCTCGCACGATTAGCTCACGGCGACTATTTGT TACCGGGTCCCGCGTTCAAGTTAAGTCTGATTTAAATTGATTCGGGAGCC ATTTTGTTTCTGGAGGTCACGTATTTCACACGTGCTTCGCGCGTCAGTGT GACCGCAAAGAAAAATTGGCGCAAAGTCTCAAAGTTGCCGTAGTAATTTT TCGCAAACAGGCGCAGTCTAGTGTGATATATATATACCTGCTAGAACAGG CGCAAATAAAGACCCGGGCTTTTCAGCTTATGATGTCCTTTTATGTCCGT TACAGATCAGTTTTTTTTCACGCAACTGTTCATAGGTCACTATCTTAGTA TTAAAACACAAATATCAGAACGCCATTTATTTCAAACTTTGAATCAAAGA AGGTAAAGATATAGAAACTGAAGTAACTGAATGGTTAAAAGTAGATTCAT GGTTGATCAAGTTGATTTGGTCGTTGATCGTGCACCACCGTTTAATTTCT TAAAAAGAAAAAAGAAGGATCAGCTCCGATATGTGGTTTTTAAATAAGAC GGTGATAGTGATGTCGAACCAGCTTTCTTTGGTCGTGACGGAGAAGACAG AGGCTACAGTATATGGTTAATTCTACCGGAGAAATTCCTCAAGCTCTTTT CGACAAGCATAATATGATCAATGGACCACGGCTTGACGTCCCGTCCTTAA GCCCCTCTCACTGCGGCCGATCGAATTGACAAAGCACACAACAAATTTCA TCGACAAAAAACGAATCTTTTTAAGCTTTGAGTGTTTTGTTGTCTTTTGG TCATACTTGTACGTTTTGAATGATATTCCCATTATAAAGTCAAAGGTAAC ACAAATCCAGTTTTGGAGGCAGCGACGCCGCCAGCGTGCGGCGGGTCCAG TGAGAGGGGACTACAGCCATTTCCTGTAGCGTACATGTCGGGTGAGCGAC AACATACGGGGTTCGGCCTCCCTATCTTTTAGTCGCTGACCACTAGACTA TACACGCTTCATATAGTTGAATGAGGTTTTTGAAGTCTCGTTTATGCTAC AGTCCCATTTCCAATCCGGGACCCCGCCCTGCAAAAACGAAAAATAAAAG AAATGCATAACAAGACAAAAAACTGATGGTTAGGAATAATTTGTTTACGT TTTGTGTTCTTTGTTGTCTTTTTTATCATACTCATCGTTCCCACAAGCTG CCCGACCGGACCCCGCTTTGGAAATGGGACTGTAGCATTAATCATGCTAC TTTTTCTACCATTGCCCAGGTTGTACAACCGTGTTTCTTAACGCCAAGAA CGGGCCCAGAATCTTGGCTCACAACGAAGACGGCGACTCCCTCATCAAAG ACCTGGGCTACGTGGTAGTCGCTAGTATAGACCCCTACGAACTGCCAAAC GGAGAGGTTATTCCCGCAGAGGGCTTTACCGCTTTCTGCTATCCCGGGCT ACTGGCTGGGAATGCTTACGGATTCAACCAACATGGTTTGTGCAGCACCG GCAACTTTCAACTGGCCAAATGTGTGGAGCGAGACAAAATACGTAAGTAC AGATTTTTTTATGTATTCTATTTGCCTTAGGCCCAGCAAGTAAATTTTAT GGATGACATCCTCTGCAGACTCCACATTTGGTGCGCACGGACGGAAAAAA CAAACAAGGCGGGCAAAAAAAACACCCCATCTAACCCTCGTGAGACAGGA AACAACAGACGATAAACGAGTGAGTGCTGTTGCATAGCTGTTTGTTTGTT TGTTTGTTTGTTTAATTGATTGATCTGTTATGACTTATGTCTCACTGTTT GACGCATATCTAGCTCAGCGGTTCTTGTGCCGCGCCCTGCTGTCAGCTGC GACCGTGGAACAGGCCGTGGACATGCTCAGGACAGACCGTGTAGGGATGG CCAGCGGATATTCTTACAACATCGTCAGCACCAAGGACAGGTGCAACATG TACTCGGTGGAGGTGGCTCCGGCGGAGGGAGAAGAAAAAAACATGGTTTC TGTTCACGTCATTGCGTCTGGAGACGGGCAGACTGACGGATGCTACAATC ATTACAATCTGTACGTTTCTCTAAGCAGATGTAGGGGGGAACATTTCTAA AGTTTTCAATCCGACCATCCCGACATCTACCGGGACTAGCATTCACATGA CGAAGCTCATCAAACTAGAAAGGCAACATTTTCGAGAAAATGCAGGATAT TCCCCTTCCGTTACCTACACCTCAAATATGACATCCTTAGCATTAACTGT AAAGGAATAATGAGTTTTCTGTATAAATTATGGAAATGAGGTCCTCATTA GCATAAGTTATGTCGAGGAGAGGAATATAACAAGAAGTGCAGCTTGATAA AGCAAATAACAAAAACTTGCACGTTGTTGCAAGTGAGAAAGGGACAAGTG ACAAATATGCACATAACTGAAACATAACAATGCATTTGATCTTACTTCAT CTTGCTTTCATTATCTCAGGTACGACCATCTGGATACGCCGCATTGGAGG GATCCTAGTTCTGACCACAGGAAAGCCCGGGCTGATGTAGTAGGGCCACT CTCGACTAAAGAGGATGTTCTGAAATTCATGGGTACGATGATAAGAAAGA TGGGAAAGGAAATGTAAATGTTGTTTGGGAAGATATGCTTCAATGGACGT GACTTCATAGTAATGTATTACAACTTAGTCTCCAAGCAAATGTAAGGAGA CGCCTATTCTCTGTTTTAGCCTGCTGTTGCTCGCTGTAGAATAAGACGTT GAAAAAAACAACGGCGTAAAACACGGTTCCTTACATCTGCTTGGAGATTG GCACAACCAGCAGGTAAACGCGTGTATACAAGTCCGTTAAACTTAGCAAA GAAGTGTGCTTAGTTCATGAAACCTCTAATTGGGACATCGCCGTCCCTTC TGATAATAGTCTTTTAACTTTGCGTATTATAGTCGTTATTGTATAGTCGT AATTGTATTGGCCATACTTGTATTTTGGTCTGAGCTGTAAGTTGCTCCCA CAATCAGAATTGATAAAACCGAGACTTATTTTGCTACATGCAGGCTGCTA TAGTGCGTAAAGTGTATTCTGTGATGAAAATTCCATTGCAACCAATCATA TTTTGCATAGTACTTTGAATATTTTGTTAATTCCTGTGTTTTGACTACTG CCGACAGGGGATACGGAGGACCCAGAGTATCCGGTTTACAGGTCCCAGAC TGGAAATGACGTGTTTATGACGACAACAACTGGTAAGCTTGAACAATGTG TCTCAACGTTACACCACGACATATACAAACACAGGTAGACACAACTACCT CCTTGATGGTGCGCCAAATAAAAAGAATCTGATTTAATTTAATACTCAGA CGTAGGTTTTCTTATACTTCGGGGAAATGTATGATACAAAATAAATTAAC TAACTGGAAGATTCCTCTGAAGAGTCAAACGTTTCAGGTAGCATCGACAA TTGAAAATTCGGAAATAATGGACCGGTGCCCCTTTTCTAAACTCCGGCGC CATTTTGAGAACTTCTCTCGCGAGAGCATAATCTGGCGGGAACGCGCGTG ATTTGGATAGATTAGGTTCTCTGTGAAGTATAACGTCTGTATTAGCTGTG TTTAATGAACTTTGAACATCTGGTTTCTTTTTTTCTCCGGTCTCCGCCAC AGGTGTGTTTGACCTTGAAGCAGGTGTTCTGGAAGTCTTCACCGGTAATC CGGCCAAGGGAGAAGAGCCTGACGTCATCTTCGTTCTTCCGGTATAGTGT CTACCAGACTCCATCGGTTGTTTTAGAAAATAGTACAAAAGTGCATTCTG AATGATACGCAAACGCAGTCTGAATGAAACGCCACTGAGTTACCCGGTCG TACTTCAGTCATCCTCCCAGCAGACCCGATATGTTCGTTACCTCCCATAG CAGCCCTACCCTTCCGAGCCCCTGAACGCGGTTCTGGCGACGTCACCACC AAAACAGCTTTCAGCCAATCAGAGGGTTTGCTAAAGCTCATTTTGAGCAA AGCCGCAAAGGACGCTGGGAAGCTATCAGCCAATCAGCTTACGTCTTACA TCGCTACTTAATCATTCATGAGCAACTTACGACTGTTTGTGCCAAATAAG GCTAGCTCATCAATTATTTATGAGCAACTGTCAGTGACGTCCCCAAAGGC CAAAATCTCCGTTCAAAAGATCAGGGCTGAGACCGGGAGGGTTTGCCGAA CATTTCCCTTGCGGGTTTCAGCGCTGATAAAGGAGGCCAGGGTGACTTCA TTTTGCAACCTATACTCCTATTGCCTTCTAACTCCTCTGGAATATTATTC ATTTGATCAAATCCTACTATTTTCCTAGCAACCCATTGATTCTGGTGGAG ACTACTTCCAGTTTAGAGATAAAACATCTTTATTTGGCATGAAGTAAACT ACGCCATACCAATTGAATTTGACTCAAGTACATACAGCATGATTATGGTA TACTTCAAATCTGTTATTACTATATAAGGTCTATTAATAAATAGCTGTAA AGGCGTGGTTATTGACAGAAACATCCTATCAGTAGTGCGAAAAGTTTTAT TGACAGGGCAAGCCTGTCAACAATGCCAACAAAATTCTTATCCTGTCGGT AGTGCCAAACATTCAGGAAAATCCTGTCAATAGTGCCAAAAGATTATTAT CGACAGGAACATTCTGTCAATAGTGCAAAAATTCTTATTGACAGGAACAT CCTATCGATAGTTTAAAGAAATTGTCTTGGCCTAGTTGTAGAAAGTGTAC CTCAAATAAAGTTGAACATGAAATATATTTTATTTCATACTGTCTCTTCT ATGAAAACGAAAGAAGTGGGCTCTCTATAGAAGCCGCTGAATTGCACTCT CTCCGCAAAAGAAGTCAAACCTAACTAATTTTAGAATTGACATTTGAAAT ACAATAGTCATATACAGTACTGTTCTTCATTCGCTGTTTTTCCCCATTTT CTAATACTGTACTTGCAATTAGCCTTTAGCTTTGGGAAAGAACATGCAAT TAACTTTAATAATTTTTATGAATATCCTTGTTATCCGAAGACAATGAGCG ATGTGTTGTAGTCTACTGAAGTTGTTCCAAACAACATGGTTAAGGTTTAC AATATACGTTCCTTTTGGATAATTAATAAAGTTCCAGATCAATTTCTGGG TCAGAGCAACAGCAGAATTAAGTTGCTAAGGGTGGAAATTGATTAACAAC TATTCACACAAACACAACAGACATTATTTTCAACATCGGATCTAGATTTC CCAAGAG

Coding sequence (CDS) from alignment at Sc0000280:176972..184478-

>Blg00021.1 ID=Blg00021.1|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=1131bp|location=Sequence derived from alignment at Sc0000280:176972..184478- (Branchiostoma lanceolatum)
ATGGTTGTACGCGTTTGTTGTGTTCGCGGAACTCACTACCAGGTCGGGCT
GCAGGTTGGGAGGGCCTTCCGTGGACAGATCGCCGAGTACTTTGAACGTT
ACCGCGTCTTCGCCAAACTCCTGGCGACCATCCAACAAGACGAAGGAAGG
AATGTGTACGAAGGTTATCTGCGGGCGGCCAAGTCTGCGTACCCCCACTA
TGTAGATGAGATAGCGGGGATGTCCGAAGGGTCGGACCTCCCGTTCGAAC
ACCTGTTCCTGATGCACTGTCAGCCCGAGTTTGGGCTCATGTTCAAGGAG
GAGTGCAAAGTTGAGGCCGTGGCCGAAGGTTGTACAACCGTGTTTCTTAA
CGCCAAGAACGGGCCCAGAATCTTGGCTCACAACGAAGACGGCGACTCCC
TCATCAAAGACCTGGGCTACGTGGTAGTCGCTAGTATAGACCCCTACGAA
CTGCCAAACGGAGAGGTTATTCCCGCAGAGGGCTTTACCGCTTTCTGCTA
TCCCGGGCTACTGGCTGGGAATGCTTACGGATTCAACCAACATGGTTTGT
GCAGCACCGGCAACTTTCAACTGGCCAAATGTGTGGAGCGAGACAAAATA
CCTCAGCGGTTCTTGTGCCGCGCCCTGCTGTCAGCTGCGACCGTGGAACA
GGCCGTGGACATGCTCAGGACAGACCGTGTAGGGATGGCCAGCGGATATT
CTTACAACATCGTCAGCACCAAGGACAGGTGCAACATGTACTCGGTGGAG
GTGGCTCCGGCGGAGGGAGAAGAAAAAAACATGGTTTCTGTTCACGTCAT
TGCGTCTGGAGACGGGCAGACTGACGGATGCTACAATCATTACAATCTGT
ACGACCATCTGGATACGCCGCATTGGAGGGATCCTAGTTCTGACCACAGG
AAAGCCCGGGCTGATGTAGTAGGGCCACTCTCGACTAAAGAGGATGTTCT
GAAATTCATGGGGGATACGGAGGACCCAGAGTATCCGGTTTACAGGTCCC
AGACTGGAAATGACGTGTTTATGACGACAACAACTGGTGTGTTTGACCTT
GAAGCAGGTGTTCTGGAAGTCTTCACCGGTAATCCGGCCAAGGGAGAAGA
GCCTGACGTCATCTTCGTTCTTCCGGTATAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00021.1-exon-Sc0000280-1570713199:183892..184478Blg00021.1-exon-Sc0000280-1570713199:183892..184478Branchiostoma lanceolatumexon
Blg00021.1-exon-Sc0000280-1570713199:182379..182543Blg00021.1-exon-Sc0000280-1570713199:182379..182543Branchiostoma lanceolatumexon
Blg00021.1-exon-Sc0000280-1570713199:180687..180959Blg00021.1-exon-Sc0000280-1570713199:180687..180959Branchiostoma lanceolatumexon
Blg00021.1-exon-Sc0000280-1570713199:180169..180415Blg00021.1-exon-Sc0000280-1570713199:180169..180415Branchiostoma lanceolatumexon
Blg00021.1-exon-Sc0000280-1570713199:179647..179759Blg00021.1-exon-Sc0000280-1570713199:179647..179759Branchiostoma lanceolatumexon
Blg00021.1-exon-Sc0000280-1570713199:178997..179071Blg00021.1-exon-Sc0000280-1570713199:178997..179071Branchiostoma lanceolatumexon
Blg00021.1-exon-Sc0000280-1570713199:176972..178576Blg00021.1-exon-Sc0000280-1570713199:176972..178576Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00021.1Blg00021.1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:176972..184478 -
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00021