Blg00018.0 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00018.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:97202..102655+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00018.0 ID=Blg00018.0|Name=Blg00018.0|organism=Branchiostoma lanceolatum|type=mRNA|length=5454bp|location=Sequence derived from alignment at Sc0000280:97202..102655+ (Branchiostoma lanceolatum)
ATGAATTTAAGCGCAGCTTCCAGTGACACGCGAACGTCGGTCGAGTTCCG AAAAATTGCCCGAAGCCCGCGTAATCGACAGGACGTCGGTCGTACTTCGG CCGAAAACACCCATTTGGAGCTCGCCGACACGTAGGCCGAGCTGAATTTT TGACTTGTAACGGGGGCTTTATTAAAAGGCATACCAACCTTACTGTTATT AACTGTACATAGATTAATTTACAAAGCCTCAAAATGACATCTCCTCTCTG AAACAGTGCTGGACGCAGGTGGAAAACCCCCAAGTGGAATTTTCGATGGA AACCTGGTCTGGGCTGGTAGCTACTCGCAATGTGTGAATATCACGAGCAA AGGCTTCAACATCACATTCGATGGGAAGTTTTACCTGGCTACGCTGGTAC CATTGGCCAGGGCCCAACAATCTGAACAGATAACACGAGTGAGTAGAAGT CACAATAGATAAAAAAATAATACTAAAAGAAAGTAACAAACGAACAAACA AACAAACAGAATGAATGAATGCCTTCCCATATAGATTGCTTACAACGATG CTAGCTCATGAGTCATGCCACTGTTTCTACAGAGCTTAGGTGGAATACTC AATGTGACGAGTATACAGATTGGCATCTGCGTCCCCAACTCCTGCAGTCA ACATGACGTCATTCAAAGATTGGACGGCAGTAAGTCTGGCATCAAATTTC GTACATACATGACTTTGAATTTGAACAGCTGTCGACAGTATGTATCGGAA TTGTGCCAATTAGTTTAATTAGTAATTCTCAGCAATTATCTAGATAATTC TGGCGACTAACGCATATGATTCTGGTAAGGTATTTTATATGCTAGACTGA ATTTAGTTTTATTCGTTGTTATGGCTTCTCGGCTTGTTACCTTCTGAACG CCGACAAATTTCTTTATCGTATTAGGTATCTACTGGCGTTTCCTTGTCCA ACAGGGCATATTACAAGTGACGTCAGCCTATTCACAGGAATCCGCACCAG TCCAAAATGTCACAATTGCTGCAATGTGAGCATATTTAATCCTTTGTTTT TGTTACTAAAGCTATGTTGATTTGATTACTAGTATATAGGTTACATCCTT TGGGAGCACCAAAATTGATGGGGGCGTGCAAATAAACTTGGGCTAATTTT TGGTTGGTTAGAAGACATTGAACTCTTTCTCTTTTCCTACTTGCACTGAT ATGTTTGTCCCCTTTGTTCTTTCTACAGATGTCTCTGCAGTCTCATCCTC ATCCTCCTTGCGATTTGCACTATCTATGACGTCATCATCCACCAACCCCG ACTGATGGCTAATGAAATTCAGAAGGTAAGAAGACATCTCAGGATCATCA AATTGAAAGTTTAAGCTAAATGACGTCTTCGAAATTACACCTAATTGAGC AACGCCATATGACCGTAAGTAGATAAATGTTAGCATACATCTGTAGTATA AAACAGTTACAAATCATTGTTATGTGATGTTACAACTGAAGGGTGGCTGA GGAGTTTTGGGTCGTTATTGAAAAAAAAACCTTCCTCAAGCTTAATTTTT TTCAGTTAGTACCCTTTTTAGGTAATTATTTATGCAAATTGGTATGACGT AATGATTTCGTCATTAAGAGTTATAAGGCCACGCCCATTTTTAGAAAAAA GGCTCTCCTTGGCTTGTACTTCGATGTTTATCAAGATCAGTTTACAGGAA TGTACATGATAGTTATACATCAAGGATTATGCGTGCCTGTGTTAATATTT TGAAATAACGATTTTTGGCGAATTTCTATTGTAATTTTTGATCCTTGTTT GTACGTTGTGCTGTGATGATCTGGGTAAATCATGTTGGGTCCATTTCATG CCAGCAGTAGAAATTTGAGCATTATGAAATAGCCTAATGTATTAAGTAGA TGACCATCGCATAATATCCGTAAGGCGTCTCCGACTGTGATGTTTGTTGA CATAATTTTGTAGGGCGGTGAAGTACAAGGACCTGACTGCACCGTGACTT TACCCGAGGAATTGACGCCGCTGGCGAACACACTCCCTTGCGAGGAAACT TCAGCAGCAAAAGAAGGTCAGAACTAACTTCAATGATACTGTTAAAAGAA TGCAGTATCAGATGTAGGAGGTTATATTATTTTGATGGTTCTATATTCCA TAGGTATCACCGGCCGTATCCTCCTGTGTTTCTCCCTCTACACCAACGTC GGGAAGCTCCTGAGCACCAAGCAGGCGCCCGGCAGCATCAAGTGTCTGCA CGGTATCCGCTTCATCAGCATGACCTGGGTCATCCTGGGACATACTTACA TTGATGCTCAATCACACTTCGGGCAATTAGGTATGTGCACTGTGCTCTAA TCCGAAGCTCGACAATCATCCGACCAACAACTTAACTACAAAGCAAAGGC CGGGTTTAAGCTTTGAGCAATTGCGCAAGTAAAACACTGGTCATTAGTGC ACTGATGGAACGTTCATAGAATCTGGTCCAGGGCGAATCTTGTTGTCACC ACATGATTTGATTTGATGTTGAAATTACCACACAGACCATCGATCTGGAA TCTATGTTAATTTGATTTTTCAGACAACCCTGCGCTAGCTCTTGAGGCCG TTCAAACATTTACAATTCAAGCCATCAACAATAGCTACGTTTCCGTGGAC TCCTTCTTCTTCCTAAGGTAAGACAACGGTTCTTCGGAACATACATGTTA TACTGGTAGAACGTAACTACGTTACATGTACAACTTTATATCTAATTATC ATCTCCAAGAAAAATGGAGATATAGTTTTGGGTGTGTCTGTGTGTGTCTG TGTGTTTGGGTTTCCGCACTACTGTAGTCAGCATAACTCAAGAACCTCTA TAATGGATTACGATGATATTTGGTATGTGGGCTGGTGTGGTGAGACCGAC ATTCAAGGTCGATTTTGCCACCTATTGTGTGACCTTGGTACTTCCATTTT TGTATCTTTTGACCTGGACGTGCTATGGTCTTGATTTTTTTGTGGCAGAT ATCTTGTGATGTAATAAAAAAAGTGGTGTAGGTTTGGGCCCCCTAGCAGC TTGCTCTGGAACTGCAGGTGCGTTATTGTGAAAATCTTCTAAGGAGAATA ACTGAACAATTGATATCTAGTATGCAGGTAGCTTAGACAGAGATGTACAT AATGAAGTGCAAATTATGCTAATTGGAATTTAATTTGCATATTTGATTAG CTTAATCTATATTTGCAATGATTTCCATAATATGACTAAAAAAATGTAAC ATATTTACTTTTGTACTTTGCAATTAGCCATTCAACCTTGCTGTTTAAGC GGAGTTCTTTGAATCAATAGCCCAACCATTTTTTTCTAATCTTCCCTTCC AGCGGACTCCTGATGTCATACCTTCTAATCAAGCAGATAGAGAAGAAGGG AGAAAAGGGAGAATCCGTCTCATACGGGATGGTGTATTTCCACAGGTATT GGAGGTGAGAATATTTCAAAGCTATTTTGAAGCATATACCATCAGATCAA TACATGCTATTAGAGATATTCCAGAAAACCACGTCTTCAAAACCAACGAC TTTGAATTCGAGACATTTTCGACAATCATCTTCTTTCTCAAAGACAAGTA TCGCAGATTTCACCGAACTGATTTTATTTCTTGTTAAGCCAAACTGACTT GATTATATGGATGACATCCTCGTTTTTTCTACCATACTGTAGATCGCGGG AAGCTGCAAAATGAACAAATATATGCTGTTAATTGCAAACAAATATCAGA AAATGGATCCTAATGTCGTGGAATGCCTCTTTCCTTATCGTAAAATGTAC TGATTCTGTCGTAAACGAATTTCTTGCACATTTTATGTTTGATGCAAGTG AAGGTTTCCACACTATAACGTGTAAGGGATTTGAATCGCTTGTATATTAT CCATTGTCTTCATCCTGCGTGCTGCCTATCGCTAGAACCACAGTGCAAAG AACCAAAAGGCTTATGCCGAGTTGATTAAAGATATGATTATTGGTTGAGC CTCCGTGAAATGTTAAGTATATGTATGGCCTCTTTGTATGTTTTGGTGCA AGCATTTTGCCATTTCTATCAATACAAATCAGCTGAAAAATGTTTTTCGA CCCCTGAGCGAGGTCTTCCAAAGTCCAAGAAGAAAATATGAAGGAACAAA AACCATGTTCTGTGAGTTCAGTCAATTGTTGAACATTTCTGACGACTTTT TTGACCCATGTATTTTTCGCTCATGCTCGCATCAGTTTTGTGGTGACGAG GGGATATCATTCATATAATCGCATCAGTTTAGCCTTACTTTAAATCATAC AGCCAGGAGGTTTCTACCAACTTCATCAAAGGAAGCTGGGCTAAGAACAT ACACTGCTGTCAGTAGACAACGAATAGAAACAGCATATCGTGAAAACGTC TTAGTGCACGTAAACAATTGCCTTCATTCTGCCATCCTCAGGTTGACACC TACTTACATGTTTGTCATGATGCTGTACATGTGGGTGCTTCCCTACATGT TCTCTGGCCCCTTCTGGCCACCAGCTCCTTTGGATCCAAACTGTGTGGAC AACTGGTGGACAAACCTACTGTATATCAACAACGTTGTCCACGAAGATAA GATTGTAAGCACATTTCTGTTAGCTTGTATGAGAGACAAGACAAGGGGTG GAAAACAGTGCCATGTTGACAATTATTCACAACACCTGCTGATCATACAC ACAACATCCGTTTCAGTATACGGAGGGGGGCATTCAACTGCACAAAGCAC GCTTGCAGCATATGAAAAGATATTTAGTTTTCCTTTTCCGATGCGGTTCT GTGGAATTCACTGCCACCACATGCAAGAGATGCAAAATCTATCGGTACTT TTAAGATTTTATATACAAAGGAACTCCAGAGATTTTTAATTTCTGTTATC CCTTATATATGTATTTTTTTTCTTCACATATCTATTATAATGTCTGCCAC TCTTCACTTTAGTGTATGCTCTGGACCTGGTACTTGGCCAATGATATGCA GTTCTTCGTCATCGGAGTTCCACTCGTCTACATACTGTACAGGTACTTCG CATGATTTTACATTATCTATAAACCAATAGCGAAATGTTGCCGTTCGTAA AGACATTGTCTAAATCACCTGAATACAATTTTTCAGTTACTATCCATTCA TCATCATGAAGCAATGCAACATGTTGGTAATCTATAGTCTTTTTACAAAC TGAAAATAAGCTTGATGTCATTTTGAATCCAATGGGATTCCATCAGATCA GAAAGACATTGAGCTATGCAAAGAAAGAACGATGTCTTAACTTTTTACTG AGCTTGCCTTTACCATTCGCTGATGATGATTCATCTGCTTACTGACAGGT GGCAGATATGGGGGATTGCTGTGAAGCTGGCTCTTCTGTTGGCAAGCTTC ATCACCACTGCAGTGATCAGCTGGCACTATGGTCTGAAAGCACCAGATGG GTAA

Coding sequence (CDS) from alignment at Sc0000280:97202..102655+

>Blg00018.0 ID=Blg00018.0|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=810bp|location=Sequence derived from alignment at Sc0000280:97202..102655+ (Branchiostoma lanceolatum)
ATGAATTTAAGCGCAGCTTCCAGTGACACGCGAACGTCGGTCGAGTTCCG
AAAAATTGCCCGAAGCCCGCGTAATCGACAGGACGTCGGTCGTACTTCGG
CCGAAAACACCCATTTGGAGCTCGCCGACACATGTCTCTGCAGTCTCATC
CTCATCCTCCTTGCGATTTGCACTATCTATGACGTCATCATCCACCAACC
CCGACTGATGGCTAATGAAATTCAGAAGGGCGGTGAAGTACAAGGACCTG
ACTGCACCGTGACTTTACCCGAGGAATTGACGCCGCTGGCGAACACACTC
CCTTGCGAGGAAACTTCAGCAGCAAAAGAAGGTATCACCGGCCGTATCCT
CCTGTGTTTCTCCCTCTACACCAACGTCGGGAAGCTCCTGAGCACCAAGC
AGGCGCCCGGCAGCATCAAGTGTCTGCACGGTATCCGCTTCATCAGCATG
ACCTGGGTCATCCTGGGACATACTTACATTGATGCTCAATCACACTTCGG
GCAATTAGACAACCCTGCGCTAGCTCTTGAGGCCGTTCAAACATTTACAA
TTCAAGCCATCAACAATAGCTACGTTTCCGTGGACTCCTTCTTCTTCCTA
AGCGGACTCCTGATGTCATACCTTCTAATCAAGCAGATAGAGAAGAAGGG
AGAAAAGGGAGAATCCGTCTCATACGGGATGGTGTATTTCCACAGGTATT
GGAGGTGGCAGATATGGGGGATTGCTGTGAAGCTGGCTCTTCTGTTGGCA
AGCTTCATCACCACTGCAGTGATCAGCTGGCACTATGGTCTGAAAGCACC
AGATGGGTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00018.0-exon-Sc0000280-1570713199:97202..97332Blg00018.0-exon-Sc0000280-1570713199:97202..97332Branchiostoma lanceolatumexon
Blg00018.0-exon-Sc0000280-1570713199:98430..98526Blg00018.0-exon-Sc0000280-1570713199:98430..98526Branchiostoma lanceolatumexon
Blg00018.0-exon-Sc0000280-1570713199:99165..99267Blg00018.0-exon-Sc0000280-1570713199:99165..99267Branchiostoma lanceolatumexon
Blg00018.0-exon-Sc0000280-1570713199:99355..99531Blg00018.0-exon-Sc0000280-1570713199:99355..99531Branchiostoma lanceolatumexon
Blg00018.0-exon-Sc0000280-1570713199:99775..99868Blg00018.0-exon-Sc0000280-1570713199:99775..99868Branchiostoma lanceolatumexon
Blg00018.0-exon-Sc0000280-1570713199:100554..100655Blg00018.0-exon-Sc0000280-1570713199:100554..100655Branchiostoma lanceolatumexon
Blg00018.0-exon-Sc0000280-1570713199:102550..102655Blg00018.0-exon-Sc0000280-1570713199:102550..102655Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00018.0Blg00018.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:97202..102655 +
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00018