Blg00017.0 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00017.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:65505..72329+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00017.0 ID=Blg00017.0|Name=Blg00017.0|organism=Branchiostoma lanceolatum|type=mRNA|length=6825bp|location=Sequence derived from alignment at Sc0000280:65505..72329+ (Branchiostoma lanceolatum)
ATGGCTGAGGTAGGTAGGGCTAAGGTGACCTAAGACGTTCTTGAGCTAAG ATACACAGGCAATTTGTTAATCTGATCGAATGCTATGTTGCGTTTGTCAA TGTTTACACGACGTGACGCCATGTTGGGGAGGGAGGCAGTACTTTCAGGC AGGACAGCACTGTCGATCTAGGATCATCTAGATCTTATTGGAATGTTTAG TATTTCAGGGGGCGGTCCTCGAGGGGGGGAGGGGGTATGACAGAAATAAG ATTGACTGGGGGTTCATACAAAAAATTGGGCGGGGTGTCTCAGGACCTTG AGAAATTTGAAAATACATATGGGGAATGTTCATCAATCTTATCGGGTGGT CAGCAGGAATGAAAATTTATTAAGGTTTCATATTGTGTCGTGTTGACGTT TTTCAATCAGAATGTGAGTCGATGTACGTAATGTTCTTGAATAGTCCAGA GCGAGTTCCCTCCTGGTTGTTCTTTTAGGACAAAAATGAGCATTATTCAG CATGTATAAAATACACAGTTTATTGCACTAGTACATGGCCGATGGCTAAT TGCAAATACATGCAACATATATATATAAGAATAATGGATAAAATGATTTG CTACTTCCGATGTCATACTATATCATGAAATATGACCTTAGCATAACTTG ACTTGTGTTATGTGACAGTTTCTATTTGCCTGTAGTCTTGGTGGATCGCG TTCCGTAGTCCGTTGGAGATCTATGAGAAGCATGGCAACTTTCTGGTGGC TGAAATCGCCCTATACACGATGGCAGTGCTCACATTAGGACACGGTGAGT GGGATGATCGTATGCCAATTAAGTACATGACATTGTGTTGTTACATGAGT AATACAGAAGTAAACGTTATTTAGGTCAGATTCTTTTTTTTCTTCCTCTT CTTCTTCTCCAAACAAATAATGTCACTGACTTGGACCAGAAGACTGTCAC CATGGTTACTGAAGGCGTTGCAGACACCCTGTGGTGTTCAATTATGTTAT GTAGCAAGTGGCAGGACAAAGCTGGAGGGGCTGGTCACCATATATGAATG TGTTTAAGTAAGAATAAACAGAGCAGTACGTAAACTGTTTGTTAGGCTAG ACCATGTACATGTGAAGGGATACATTATGCATAATTTGCTTGTAAATGTG TCAAATGCCTTTACTCTCTAAACCGCTATCCCTACCGAAGCGTTTCGGAT CGGTGGGCGGTACCGGAGCCTGTGGTTTGCGGCTCTGCTGCACGGCGTGG TTACAGAGACGGTTTGCTACTGGACACCGGAAATCAACAACTTCTGGCAT GCGCAGTCTTCCGTCATGATGCTGGGCAAGAGACTTCCTCTCTACATCAT GCTTTGTCGTGAGTATTAATCATGTATACGTAGGAGTGCACAGTATGTGT GGAGACCATAATCGAATAAATCTGTAAACTGTCTCAGTCGCGTTTGGGAC CGCATTCTTCAAACTTGCAGCAGCGACACCTAGCTGCAGTGCCAAGTATA ACCAGTCAGTATTTCCCCGAACAGGTGACAGACGGTTACCTATTATAAAC GTCGGGGAAATGGTTGCACACAGAGAACTTTTTATCATGTATACTGTCTG TGTATCGCCGTATAACGATAATGTTAAATTGTAAGAAAGCGTACAAGAAC AACCACAGATTATGCTGTTACGGCAATGTCAGGGTTCAAATGTCTTTTAA AAAGAGTTTTACGAAAAATTGTCATTACAGGTATGTTGCACATCAGATCT TGTAAAATTCTGTTAAATTGATGATCAGAATTGGTGATCAGACTATGAAA AATGTACACGTGTTTCACAAAATGTCGAATTTAANCATCTGATCTTGTAA AATTCTGTTAAATTGATGATCAGAATTGGTGATCAGACTATGAAAAATGT ACACGTGTTTCACAAAATGTCGAATTTAACTCTATCTACAGATTCTACAT AGATATGGATTGGTGTTTGTGCCATGAAGCTGAATCCGTTTTTGGCGACG CCTCAGGTGCGAGCCTAATAGTATAGTATTGTGTGCAGTTTGCAAGAATT ATAGGAATTGTACAGGCATTTGTCTACAGGAATCCTGTTCCATTTGTGTG TTTTCTCTGTAGATCCAGTCTTCAACTATGTTTCCAACGTCGCCGCCAGT CGGCTGAAGCTAGGTATCTTCCCAACGGCTTATACATCGGCGCTGGCGGA CTGTGTTTCTTTTCACGTGTTTGACATCATCGCCATCAAACTGCTATGGT GGACATGGCATGACACGGATCCGACCATCTACGAACGGCACTTTTGGGTA AACATTTTCCTCTAACTTACTATATCTAGTCTTAATACCATCAAGCCTTC GGGTACTGAAGTAGCCACATCGGCGAAACCGGTCTGGGCGACAGTAATGA TAATCATGATAATGGTTTATTTGTTCAGACATTGCCCGTGCAATGGCAGC TAGTGCTGAATTGCTGCAGGGTTTACAATCACATGATACAAAGCAGATAC ATGTACATATTTGCACTTTGTGGAACTGTCGCAAGGGTTTGGTACACATT TTTATTTGACTATTGTATAGTGCGAGGCGGAAGATGGTGTAACCGTAGTC GATCCATAAAACATACTATATTTCACGGAGGTATGAGATCTTACGTGTGT TTTTAGGTGCCGTTCACCAGTACCTTGTACCGGCTCACATTCTCTCCTAC ATTCACCCTGTTCTTTTACGGAACTCACAAGGTGATGACAGGAAAACGCA TGTTACAAGCCGGAAGGTACGTAACGTTAGGTCAATTTAGTGCATACTTT ATTGAACTGTGTTTTGTTTTACATTATTGGCAAAATCAATTGTTGGCAAA ATCAATTGTCACAAGGAATGATAGATGTCTTTAGGCTTTCGGGACAAAGC TAGTATACTTCCACAGGGGTCGTGTGACGTAACGGCAGGTTGCTCGGCCC AGAACCCAGCGGTTCCTGGTTCGAATCCCTTCACGTCACCGATGTTGTGT CCCTGGGAAAGGCACTTTACACGACTTTCCTCAATCCACCCAGATGTAGA AATGGGTATACTGATCTCTGTACGTGGTACTTGAGTGCAGTGCCACGTCA TCCTTGTCTGTCCAAAAACGACGTAACACAATATCACAGGGAATTTTCTC TGTCTTGGATTGAGAACGGTGACTCATACCAATGACCACCAGAACCGGTC CCGAGCACTTAGGCAAGAACATGTAGCTACACAAACTCGTGATTTAGAGG TTGGGTTATCAACCACAACACCACAGCATACATGATTTTAAAACAATGTC TGTGTTCGACATAGCTCTCCTTGGTACACAGCTGTATAGTCAACTCTTTT CCAGCTGATGTATATGCTACCATCAACGGCATCAGAGCAGCTGATAGCAG AGAAACAATAGTGCTATGTACCAGAGAGAACTATGTTGAATACCTTTCCC AAACTGCAGCTGATGAAATAATTTACGAATGTCTATGTTTTTTTACCAGT TTTCTCCAGGAGACCGCTTCCATCCTTCTCACGGGCCTCCTGACCTTCCC CGCGGCCGTCGCGACGCACTTCATCCCGCTCTACCACAGCCTGCACGACG CGCTCGACGCCAGCTCCGAGGTCTGCGTCCTCGCCGTCATCTACCTGTAC ATCCTCATCGTGTGGGTGTCGGACAGGAACGGTCCGGAGGAGGCCAGGCC CAGGAAGAAAGGTGAGTTAACTCAATACAGTTTTCAAGTCAAGTCAAAGC CTTTATTTCTTTCGAATGTTTGTTCGGCCAGTTTTCCGCTTTTCAACAAG GTCGAAGTGGAGGGGGATCCGGAGGAGTCACGGATAAAGAGTGAGGTTTT GAGGAGGTTTCTGGTGTCTTTTTTCCGCACTCATGTCTTAGGAGGAGTGG TTAGGCTAGCGGACACAAGTTTGAAAGGTGAAGGGTTCGATTCCTGGTAT CCCTGGCTAGACGCTTTGTCCTTGAGAAAGGCACTTAACACGACTTTCCT CACTCCACCCAGGTGCAAAAATGGGTACCTGACTTCGGTTGGGGAGGCAA AAGGTTGTGGAAGGCGAGGGATTGGCACCGCTCTTCCATACCTTGCCCTA AACACATTGCATAACAACCCAAGAGCCACTACAGCCTCAAAAAGGCTATG ACAGTACCTTTGCCCGTTTCGTGTCTTTTAAAAAATATATTTTTCAAATA TATTTTTCCATTCTTAAGTATATGTTTTGCAGAAAATGGATATCATCACG GAAATATTTATGTTGAGCCCAACATACTGTTGGGCGCAACATACTGTGTT CGTAAGGTTTCTTTCTCCTGTCAAATCTTACAGTCGACGCAGCTCGGTCG TCCCCCAGTGGACCAACTGAGCTGAAATTTGGTATACAGGTAGAGTGGGT AAATACCCTGGCTGGGACCTTTTTTTCATTTTTTCGATATTGACCTTGAA AGTGATTTTATTGAGGTTTTTCTGACCAAAAACGTACATTTTGGCCTCCT GTGCTCTGGAAATACATCGAAATGACCTGAAATTTGCTATGGGGGTACAT TGAACAAATTTTCAAAGAATCCCATTCGCACTTTCGGCATAAAACACTTC GCAATACGATTTTAGAGGGTATTTGGAGGAGAATATCGGCTATTTTCCTC ATATGGGGTCACTGACCTTTAGGTCACATCTTTATTCATCTGGCCAGGTG GACTAATTCGGTAAGCCAATGAGAGAGCGCGGATTTAACAAGCTCAACCT GATTGGTTGAAATAGTCAATTTAATTAGGGGCACTGCTCTGACAGGGGCC AACACAACTTCACTACTCCCTGGCTCCCATCCTTGATTTGTTATTGTTGT GTCCTACTGAAGTTAAGTGCAATTGAGAAGGTTGAAAACTTACGACACAC GACATTTTTCGACACACACGGTGTTTTTCTTATTTTAACACTGCATGGAA ACAAAGATTTCCACAAGTTTGCAAGCTTGGACACTATGGTGAAACTTGAC ATTTCCTCGCTATGTACACGAATTTTCTACCCCTGTGTCACCAAGATTGG ACACCAGTGCGCACAATAGTGCACACAAAGTGTCCAAAGTTTCCCACCTT CGGAAACATCCCGTGTCGGGACGTTGACAATAACATTAACAATAACAATA GAGAGTTGTGAAGTGCGTGAAAATTTACCTTGAGCAAGGAGGCCCTCGCT TAGAGTAATTGTTTAAATTTTTAGGCTAAAAATTACGTAAACCTAAGAAT TTTCAACCTCCTTGCGTAAACCCCTGTTACATGTCTACACTATCGGGCCG CGGGAAAGTCTTGAATATCGGCGCTGATCGATAGCGTATTAAACAGAATG TGTGGCGTAGCGTTGTACTAAAAAAATAGTATTTTCATCGCAACCTGACT GGCACTTGTTTAAAAAAGTCGAAGATTTCTCCACACACAATCGTCTGCAA CTTGTTTTGTTTGCGGTACCAGATAGTCGGCTTGATGGCGAGGTTTTGTT GGTCGCCTTTTTGCATATATTAACAGTGTCATGCCAGCGCCATATTGTAT TATCGGCCCTTCATCTATATCGTTAGCCTCTATGCCACAGTCGCTTTTTG CGTGGGGAGGGAAATGGGCGAAACATGTTGCATTTGCTCCCGCAAATGTT GCCTTTCTAGTTCATTCTATTTCTATTCTTCGTGAACAGGTAAGCACCCC TGGAAGGACGAGCTGACCCTGGTTGTTCTGATCCACTTCCTGACCTTCGC TGGACTGGCCGTTTTCGCTAAACCGGAGTCGATCGTGTCTACTGGGGTAC ACGAACCACTCGGACCCTGCAACGAGACAGTGCATTTCTACAATGCCATT GGACAGGTCTGTATATCACAAACTGAAAGAGCACTGTAGACGGTGTGTGT TTCATCGTGCATGCACTTATACGTTGGAAATACATACACCACCACTCTAC CACGATCGTTAGACCGGTTGAACGGCCGGCTGAGTAGAGTGTTCGCTTTG CATTTGGTAGGTCGTGAGTTCGATCCCGGCCGATCATACCACAGAGTTTA AAAAACGATACACACTACTTTCCTACTTAGCACTCAGCATCTGGGAGTGT GGTAGTTGAACACACACAACTACCAGTGAACTAACCCCCTGCTGTAGTGA TTGCACAAAGTTGTGTGGCCCAAGGGCTATTGAAACGGAAATGGGCGCGA CATATTCGCCATCTGGTGAAGGAAGAACTTTGATACTACGCTCATCATTG AAAAATCCATCCAGTTGCTTGAGTAACGTCTGTATTGTGTATACCAAGCT CAAATGTGCTATTCACCCATAGCGTTCATCAGTGATCATGATAGCTTTAC ACTATAACCAAAAATACATAGAATGCTACATTAGGTGTGCATATCACAAG GAAAATACAATGTTATAGTACATATTACGTGACAGTTTTGCAAGGCCTGA CAATTTCCTGAAAGCAAATGAAATGCATTTATTCGTCAGGGAAAGGTGAA GTTATCCTCATTCTCGTTTCTCTGGAACTGTGCTTATCATAATGAAAAAG AGGGTTTTCCCTATTCACAGGTTGTATCTAAGAGGAAGTATCTGTGTCCC ACCGACTATGACGAGGGCTACATGGATTTCCACTGCGTTCACGGTGGTAA GGCTCCCCCTGGCGTGCACCACTGGTACACCATCTGTGGAACCCCTTACG AGAACCATGCCGAATACATTACTGTTGTGTGGGGCTTCTGTCTGCTGGGT CTGGCCTACTACTACAACCTACTGGCCTGTTCTGGTCTGGACGAGGCACC GAACAAGAAACACAAAACAAACTAA

Coding sequence (CDS) from alignment at Sc0000280:65505..72329+

>Blg00017.0 ID=Blg00017.0|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=1215bp|location=Sequence derived from alignment at Sc0000280:65505..72329+ (Branchiostoma lanceolatum)
ATGGCTGAGTCTTGGTGGATCGCGTTCCGTAGTCCGTTGGAGATCTATGA
GAAGCATGGCAACTTTCTGGTGGCTGAAATCGCCCTATACACGATGGCAG
TGCTCACATTAGGACACGCGTTTCGGATCGGTGGGCGGTACCGGAGCCTG
TGGTTTGCGGCTCTGCTGCACGGCGTGGTTACAGAGACGGTTTGCTACTG
GACACCGGAAATCAACAACTTCTGGCATGCGCAGTCTTCCGTCATGATGC
TGGGCAAGAGACTTCCTCTCTACATCATGCTTTGTCATCCAGTCTTCAAC
TATGTTTCCAACGTCGCCGCCAGTCGGCTGAAGCTAGGTATCTTCCCAAC
GGCTTATACATCGGCGCTGGCGGACTGTGTTTCTTTTCACGTGTTTGACA
TCATCGCCATCAAACTGCTATGGTGGACATGGCATGACACGGATCCGACC
ATCTACGAACGGCACTTTTGGGTGCCGTTCACCAGTACCTTGTACCGGCT
CACATTCTCTCCTACATTCACCCTGTTCTTTTACGGAACTCACAAGGTGA
TGACAGGAAAACGCATGTTACAAGCCGGAAGTTTTCTCCAGGAGACCGCT
TCCATCCTTCTCACGGGCCTCCTGACCTTCCCCGCGGCCGTCGCGACGCA
CTTCATCCCGCTCTACCACAGCCTGCACGACGCGCTCGACGCCAGCTCCG
AGGTCTGCGTCCTCGCCGTCATCTACCTGTACATCCTCATCGTGTGGGTG
TCGGACAGGAACGGTCCGGAGGAGGCCAGGCCCAGGAAGAAAGGTAAGCA
CCCCTGGAAGGACGAGCTGACCCTGGTTGTTCTGATCCACTTCCTGACCT
TCGCTGGACTGGCCGTTTTCGCTAAACCGGAGTCGATCGTGTCTACTGGG
GTACACGAACCACTCGGACCCTGCAACGAGACAGTGCATTTCTACAATGC
CATTGGACAGGTTGTATCTAAGAGGAAGTATCTGTGTCCCACCGACTATG
ACGAGGGCTACATGGATTTCCACTGCGTTCACGGTGGTAAGGCTCCCCCT
GGCGTGCACCACTGGTACACCATCTGTGGAACCCCTTACGAGAACCATGC
CGAATACATTACTGTTGTGTGGGGCTTCTGTCTGCTGGGTCTGGCCTACT
ACTACAACCTACTGGCCTGTTCTGGTCTGGACGAGGCACCGAACAAGAAA
CACAAAACAAACTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00017.0Blg00017.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00017.0-exon-Sc0000280-1570713199:65505..65513Blg00017.0-exon-Sc0000280-1570713199:65505..65513Branchiostoma lanceolatumexon
Blg00017.0-exon-Sc0000280-1570713199:66190..66298Blg00017.0-exon-Sc0000280-1570713199:66190..66298Branchiostoma lanceolatumexon
Blg00017.0-exon-Sc0000280-1570713199:66695..66862Blg00017.0-exon-Sc0000280-1570713199:66695..66862Branchiostoma lanceolatumexon
Blg00017.0-exon-Sc0000280-1570713199:67617..67801Blg00017.0-exon-Sc0000280-1570713199:67617..67801Branchiostoma lanceolatumexon
Blg00017.0-exon-Sc0000280-1570713199:68161..68270Blg00017.0-exon-Sc0000280-1570713199:68161..68270Branchiostoma lanceolatumexon
Blg00017.0-exon-Sc0000280-1570713199:69004..69215Blg00017.0-exon-Sc0000280-1570713199:69004..69215Branchiostoma lanceolatumexon
Blg00017.0-exon-Sc0000280-1570713199:71194..71360Blg00017.0-exon-Sc0000280-1570713199:71194..71360Branchiostoma lanceolatumexon
Blg00017.0-exon-Sc0000280-1570713199:72075..72329Blg00017.0-exon-Sc0000280-1570713199:72075..72329Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:65505..72329 +
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00017