Blg00014.0 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00014.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000280:216427..221269+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00014.0 ID=Blg00014.0|Name=Blg00014.0|organism=Branchiostoma lanceolatum|type=mRNA|length=4843bp|location=Sequence derived from alignment at Sc0000280:216427..221269+ (Branchiostoma lanceolatum)
ATGAAGATACACCTTTCTTACAAATACACAGGTTAGAAGATACAAGGCGT CTTCGAAGATATGGCGGACCCATACGCATACCCGGCGCCAGTGTTTGCGC AACCCCTACCACCACCGCCAGTATATCCGTCAGGTTCGTACCATCTCATG CCAACACTCATAGACCCCGTTCATACTAAGCCTTTCATAGCCAGTTGAAT AAATTAAAATATTTAATCGGCTAATTAACCCGGCTATCTTGGCTTCATGA ACGGCTAAATAAGGGTTTTAGAAAGCTTGCGTTCTCTCTATTAACAAATC GGCACATAACTACCACACATTCAACTCAAATAAAAAGAAAAATTCAATAC CAATTCATATTGATAATTATAAAAAGATCTAGCCCGTAATCGCTAAACTA ACCTAGCAAACCTGAAGTATATGTAGCACAAATACTTAACTCTAGTTTTT TAATTCTGTTTGCAGCACCAGGAACTGAGCCGGGTCCGTTGATGGTTAGG AATCTGGAGGCACATGACGTCGACTTTGTCTCTCGAATGATGGTGGAAGC TTTCAACGATAAGTTTGAACATGCGGTGGGCAAGAGTCGGTGAGTATAAA TTCCTCTGGAGTGTGTTCAGACCTCAGATAATTATAAATCAACTTCAGAC CTGGGAAATTGGTAGGGTAAGGTGTCTGTTTTGCATTTGGGAGATTGAAG GTTCAAAATCCGGTAAGATCATGCAAAAGACTATAGAATGGTACTAGACT CTCCAAAATTCTGCTTTCTCTGTTTAGCACTCGGCAGAAGGAGCTCGAGT ATGGTAGTTTAACACATACCATTACCAGTAGACTAACCGCCGGCTGTGGT GCTTTCATAACTGTGCGGCCAAATGGGTATATAGAGACAAGAAGGGCACC ACCCAGTTTAGAACATATAGAGATGTTCTGAAGTTGAAATCTTCTCACAC CTTTCAGTAAATAGGGGCCCTATATACTGAAAGGTGTGAGAAGATTTCAA CTTCAGAACATCTCTATATGTTCTGAAATGCAAGCCGGAGGCCTCGTATT TGAGGAGAGCCACAGCTCGAGCACGTTAAAGGCAACCAAAGCAATATCAA GGGGGGGGGGGGGNATTTGAGGAGAGCCACAGCTCGAGCACGTTAAAGGC AACCAAAGCAATATCAGGGGGGGGGGGGGGAAATGTAAATAAAAAAGAAA TGCTGAAATATATATGATAGTGATATCTACTGACATTGTTTAGCACATTT GCGTAATAACCTCATACTTTTAGGATTTATAAAACCTCTGAAAATCGTAC CGTACGATGATCCCCTTAGTATACAAAAACTCCAGTCCAGTGAGTTCTCA CATCACACCAACGTCATATCATGCGTAGAGATAACTAAATAAATTGACTT TGAAATCCAATTTTTCGGACCCTGATATTGGTTTCCTTTAAAAAGATCTT ACCGAACTTATTGATAAGAGTAGGCTAGGGGTCCATCCCGTTGTGAGTGG ATCAAACCTTGTACTTACTGTACAAAACTGGTGTGAAATGAACGTCACAT GAAAAATGTTCTGTAGAATGGAAGGTGCCGTCCAACAGTCAGCCAGGATG CTGGGCAGGTCCCGTCAAGTGTGGCACAGATATTTCATCGCCTTGTATGA AGGCAGGCCAGCAGGCGCCATGGCCATCAGATTCCACGGAGACAGGTCAG TTTATAGTGTGTGGCATTGGTGTGGCAAATGGTGTGGCATTAAGCCTCCC CAACTGGAGTCAACGGCAACTGATAGAACAGCCTGGAGAGCACTTATATT CCGAGCTACAACCAACTTTGAAGAAGAACGGAGGCAGCGGCTGAATGCTG CCAGAGCCAAGCGCCACAGGACAGCAGCAACAGCGGTCCAGACAGCGGAC CACCAGTGCACAACATGTGGACGGCTGTGTGCCTCAAGCTTTGGACTGAG AAGCCACATGAGGGCACATCCCCCGTGAATGAGCAACACACGACAGTCAT CTTCGACTTCGAAGGACTACCAAGATAACTCGCACGACTTATAATGTTGG ATGCCTTATTATCTTCGCCAAGAAGATTATGTTTTGGGTAGCGTTTGTAT GTGTGTGTGTGTGTGTAATCTAGCAGCTTAACTCAAGAAGGCTAGGATGG ATTGTCTTGATATTTGGTAGGTTGGTAGGTCTTGTTATTGATGCAGACAT GCCGGGTTTTGATTTGGCAATCGTGAAGATTGTGGGGTCGTGTGGCGTAA CAACAGGGTGTTCAGCCAAGAACCAAGAGCCAAGTCCCGGGTTCAAATCT CCCCAACGCCACCGATGTTGTGCCTTGGGAAAGGCACTTTACACGACTTT CCTCACTCCACCCAGATGTAAAAATTGGTGTATTTGTACGTGGCACTGTT AGAAATAAATTATAAAAACTTGAATGCATTGTCACATCGTCCTTGTCTGT CAAAAAGCGAAGCAAAAAAAAATCGGAATACTTTCAGGCTTCAGTCATAA ACTAGACTACACATTGCAGACAATAATCTATTTTGAGTGGAAATGAACAA CGCGTGAATGTGAATAATTTCTGCTGTCATCAAATCTATCGATCCTGTTT ACTTTTCTATCAAAATGGCCTATACTGTTAGTCCGTGACTCGGTTTTCTA GATATGCTCATCAGAATGTAACCTGGTTCCTTTGTCTCTTGCAGTGCGGA GGAGGATTTCGAATGCGGGGAGGCTTGCTCATATCTCGGCTGCTGGGGCA CTCGTGGGTATGGATCACATTTATTTGTTTGTTTGTTTGTTTGTTTGTTT GTTTGTTTGTTAAATTCCTGGTGTAGATTAACAAACAGTAAACCACCTTG TGGTGTAACACTTCAGTTCGTTACTTGCAGTTAGAATGCAAGTTCATCAA ATACTGTTAAATTGCATTTATTTTCGAAGGGAGAAACCTTCATTTTCCCA ATGTTTTAAGCTCGCGGTTGGTAGTTCTATTGTACAGAAGTACTCCATTG GAAATGCATCTTTATATTGTCATGATTTTTCCGTGGGGAAGTCACTGCAA AAATAAAACCACGGCGAACGAAGTGGCTAAACATTGATGAAATGTTATGT CTTTGTTTTGCATATCTACATTTGAAGCATGGTGCACTGGGCTATGGGAT CTTTCTATTTTCTTACAATCTTTATAAACCATTGCAGACTCATTTGTCTG GGCTGTGCCACGGGAAGCGAAAGCGTTCCTATGGGGGAGTGTTACGTGGA CCATATCGGCGTGGACGCAAGCTTTCGCGGGAGAGGCATCGGCAAGATGC TGATGGATAGGGCTGATTATGAGGCCAGGCAACGGGGATGCAGGGTAGGC TGAATGGCAACATTGTATACATCTTGAAATATTCTATTGTAAATTCATTT TTCAGTAGTTTTATTTCATGCTAATTGCCATTCTCGCATTGGTTGAACTG CTAATTGATAGTGATGGACAGTCAGGATTGGTCTTGATTGGATCAATTTC TTGTCAAACTTTCTCTTTTCTTACAACACTAGATTTGATGTACAGTCAAA CCTGGATTCATCAACCCCTAATTGTAGAGGGACTGAGGACAAATCATTGT TTAGGACAGTTGGTTGCTTAGGACACGGTGGAGTTAATCATGTTAATCAA ATTAAAGTGGACGGGACTGTTTTAATGTGGCTTGTGACTGGAGGTGGCTG GCTGCGACAGGTGGTTGTAAATACTTTGCATTTGGGACCGCATCTGTTAG CAGCGACACCTAGCTGCAGTTACAGTGAAATAGAACCAGTCAGCATTGTC CTGATGAAGGTGGCAGACAGTCATGGAAACATTGGCTTCTGTAAATTTCT TGGTTGTGAATGAAGAACCTTGTTTGTTGTCCAACAGACGATTTTCCTGT GGGTGAAGCAGAGTAACCGCGCTGTTCACCTGTACGAACGTCAAGGCTAC TCAATCTCTGAAACCGTCAACGGGAGCTGCTTGCTGCAATGTGCTTTAGG AAGTGCGGTGAGTCTGATTTACTTATTGGTTTATCAGTAAGAAGATTAAA AGACTGTGTCAAGGGCACATTGTTAGAAGGCGGAGCCCATCCCTAAATTC CTTCCACCACTGTTCACCTCCCTAACCGAAGTCAGGTACCCATTTTTACA CTTTTCCCAGGGACACATTGTCTAGCCAGGAGTACCAGGAACCAAACCCG TGATCTCTTGATCTCGTGTCTGCTATGCCACTTTGCCATTCGATGCCACA AATGGTATTAGTATCTACAGTTACAACCACTGCGAAGCTCAGTGCAAACT AGATGACCTTCGCTTTAGTAACCTTAAAAATCGAGGGGACATTGGACTAG CTGGAAATGGTGAACTAGAATCTGTCATAAAGGACAGAGCGGTGTGTGGA AACATGTTGTGGAGGACATTAACAGAAATAACTAATCTGATGTCCACCTT TTGCATCCCGTACCTCCAATCGCGTGATCAGCTATCATTCCATTAATTTC ATACATGTACTTCTGCACACTATAAGTGCAGGCACATTCGTTGTACGATT TTCTGCAGTACTCAGCTTTTGCATGTAGACTATGACAGAACTGTTGATAA AGATCTGCAACAACCTTATCGAGACAGCTTACAAATCCACGACTGTTCCA ACAATGCTATCAATTTGCACTCATCCATTAATTGTACAAGGAATGTGTCG CCTAATTTTTGTGGAAATCTCAGCTACCAAATTTTATATCTGATGATAGT TGCAGTGTTTTCCAATGTTCATCCCTTGCCTTACAGGTACTGTTTGAAGT AGTTTTTTTGTTTATTGTGACGTCGGCGTGGCGTAACGGTTAG

Coding sequence (CDS) from alignment at Sc0000280:216427..221269+

>Blg00014.0 ID=Blg00014.0|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=681bp|location=Sequence derived from alignment at Sc0000280:216427..221269+ (Branchiostoma lanceolatum)
ATGAAGATACACCTTTCTTACAAATACACAGCACCAGGAACTGAGCCGGG
TCCGTTGATGGTTAGGAATCTGGAGGCACATGACGTCGACTTTGTCTCTC
GAATGATGGTGGAAGCTTTCAACGATAAGTTTGAACATGCGGTGGGCAAG
AGTCGAATGGAAGGTGCCGTCCAACAGTCAGCCAGGATGCTGGGCAGGTC
CCGTCAAGTGTGGCACAGATATTTCATCGCCTTGTATGAAGGCAGGCCAG
CAGGCGCCATGGCCATCAGATTCCACGGAGACAGTGCGGAGGAGGATTTC
GAATGCGGGGAGGCTTGCTCATATCTCGGCTGCTGGGGCACTCGTGGACT
CATTTGTCTGGGCTGTGCCACGGGAAGCGAAAGCGTTCCTATGGGGGAGT
GTTACGTGGACCATATCGGCGTGGACGCAAGCTTTCGCGGGAGAGGCATC
GGCAAGATGCTGATGGATAGGGCTGATTATGAGGCCAGGCAACGGGGATG
CAGGACGATTTTCCTGTGGGTGAAGCAGAGTAACCGCGCTGTTCACCTGT
ACGAACGTCAAGGCTACTCAATCTCTGAAACCGTCAACGGGAGCTGCTTG
CTGCAATGTGCTTTAGGAAGTGCGGTACTGTTTGAAGTAGTTTTTTTGTT
TATTGTGACGTCGGCGTGGCGTAACGGTTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00014.0-exon-Sc0000280-1570713199:216427..216457Blg00014.0-exon-Sc0000280-1570713199:216427..216457Branchiostoma lanceolatumexon
Blg00014.0-exon-Sc0000280-1570713199:216892..217015Blg00014.0-exon-Sc0000280-1570713199:216892..217015Branchiostoma lanceolatumexon
Blg00014.0-exon-Sc0000280-1570713199:217993..218121Blg00014.0-exon-Sc0000280-1570713199:217993..218121Branchiostoma lanceolatumexon
Blg00014.0-exon-Sc0000280-1570713199:219121..219183Blg00014.0-exon-Sc0000280-1570713199:219121..219183Branchiostoma lanceolatumexon
Blg00014.0-exon-Sc0000280-1570713199:219614..219770Blg00014.0-exon-Sc0000280-1570713199:219614..219770Branchiostoma lanceolatumexon
Blg00014.0-exon-Sc0000280-1570713199:220314..220433Blg00014.0-exon-Sc0000280-1570713199:220314..220433Branchiostoma lanceolatumexon
Blg00014.0-exon-Sc0000280-1570713199:221213..221269Blg00014.0-exon-Sc0000280-1570713199:221213..221269Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00014.0Blg00014.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000280genomeSc0000280:216427..221269 +
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00014