Blg00011.0 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00011.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000648:26266..28563+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00011.0 ID=Blg00011.0|Name=Blg00011.0|organism=Branchiostoma lanceolatum|type=mRNA|length=2298bp|location=Sequence derived from alignment at Sc0000648:26266..28563+ (Branchiostoma lanceolatum)
ATGTACTACCTACGATGTATCTATGCTGTGTTCTATTCACTCTACCTGCT CTTCGTGTTGAAAGCTCCAACGGACGCCGACATCGTTTGTTTTGTGGAGA ACTCGACCATATGTATGCTCATACGTCCTGCAAAAGACGATAGGTCAGTT CGATATCTTTTTCTTCTTTCAAAAACAACTTTATTGTCCGATGTACATTT AATGTACAGTCAACGTACACATGCTTCGAGGAGGTTAAGTTAAGATGGTA TGAAAACAAAAAAAACTGAGACTATATATATATAATAGTCATACATGATA CATAGATTCCTAGCGTACACATGTATCTCAAACGTTTGCCGATCTTTGTA CAGCAATGAAGAAAATGTTTAGAAAGCTTTGACATATATGATATCAGTGT GCATTCTATGTCGAATAATGAAATGATATCACCAAAATTTGATCTTTAAA AGCATACTTTAAAGCATACGTAAAGCTAGCGTTTTTCAATCCTTATGGAA AACGCAAGCTTTACGCATGCCTTGAGGGTATGCTTAAAGATTAGATTTCA TGAAGTGCGACTAATGACATTCCATATCGAAACATACAAAATCTATGGTT TAGTAATCTGTTTCTTTGTTACTAACGTTGTCAAACCCTTACGGTCGATT CAGGTATGCGGACGAATATGAAGTGACGGTTGACGACTGCAAGCTGCGCG CCACTGGCGGATTTCACCTGAAGCGCATGTCGATGCGTTACAAGAAAGGA GAGGATGGCGACCAGATTTTGTGCTTCACTCGCAACGGAGTGGAGATCAG CGACAGGTCTCAAATATTTTCCACTTGGTACTTCTACGGTACTCATTCAT CGCATGTCAAGAGCCATCTATTCTCCAATAGCTTGGTCCGACACATCGTG GATAGGGATTTGAAGACCCTCCAGGAGTCGACCTACACGGCCATACCCTT ACACTACGGACTCTTACATTCATCCATCAGTGTTCTGAACGGCGAAGGAA ACGTGCCGAGTTTTCTCGGCTACGGAGGGGTGGGCATCAGGGAGAGCCTG GTGGAAGAAAGCAAGAATATGAGCTCGTGGGAGGGGCACCAATCCGGACG ACGCTGGGACTTACTCGGGAAGGAGAGTCTACTCTACAAACTCTTCCGGT TAGTACAAGCGTTTATCTCGAGGTAGAGGTAGGTTCCAACCGGCAGTTGT TGTTGTTGTTCACTCCTTCTAGTGCCTAGTGGCACATAAAGTCAGTAAGT TTCCTTGCTGTTGCAGTAGCAGGGTATGTTTTTACAGGGAGCGGTTGCCA GCCCTTACCCTTTAACGTGCTCTAGGCACCTCCTCTAACACTTTATGTCC CTTCCGAAAGACGGGTGCAGTCCCAACTGAGATGTCTCGTCCTAGGATTT GATCCGGGGTCTCAAAGTTACCAACTAATTGGAACCGGTAGCTCAACTGT GAGTCTGAAACCGGTTGAAGTACAGGAAATTCCCTTTTGACCGGCAGTAA GAAAACGTTAAGATCTAATTCTTCCATCGCGGTATCTGTTCCCTCAGGTC CAGGCGAGCGCTACGTGACGTCATGAAGCGCCACGGGATCGACCTGAAGT TGATGGAGGCGCTTTTCAACCACATCATCGTCCACAGCATGGACCATCAC GGCGGAGATGAGTCGTCGCATCTGAGGTGGGTCGTCATTAATTCATTCAT TCCTTCATGCATTCATTCATGTATTCATTCATAATCATTCATATATTTAT TTATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCACTACAAT GCGTCCTACACACACACACACATACGCACGCATGTACACACAAACACACT CATACATACATATAACATACATATATACAAACACACGTGCACACACACAA ACACACACACACGCACACACACACACGTGCGCGCGCACACACTCACACAA ACACACACACACACACACAATCAAACTCAAGCACACAGACACACGCACAC ACCAACTGAAGCTCATCGCTAGGTGTCGCTGTGGCTAACTTGTGCTACAA CCTTGTATCACCTCTCACCCCATGCTTTCTCCAGGTATTCTCTCCATCCA TGGCACACGGGATGTACCCCCTACCAGGCCTTCAAAACCAACATGTTCCG TGTCCTGATCATCCGGCCCAACCTCAACCCGCTGGCACCGAACACCCTCC GCTCGATCAACAAGCCGTTCTACCAGGACCTGTACCGCGAACTGAAGAAG ATTGATCCAGAAGTGGCGGAGGTAGCCACCGCTAGTGTCATGTACTAG

Coding sequence (CDS) from alignment at Sc0000648:26266..28563+

>Blg00011.0 ID=Blg00011.0|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=981bp|location=Sequence derived from alignment at Sc0000648:26266..28563+ (Branchiostoma lanceolatum)
ATGTACTACCTACGATGTATCTATGCTGTGTTCTATTCACTCTACCTGCT
CTTCGTGTTGAAAGCTCCAACGGACGCCGACATCGTTTGTTTTGTGGAGA
ACTCGACCATATGTATGCTCATACGTCCTGCAAAAGACGATAGGTATGCG
GACGAATATGAAGTGACGGTTGACGACTGCAAGCTGCGCGCCACTGGCGG
ATTTCACCTGAAGCGCATGTCGATGCGTTACAAGAAAGGAGAGGATGGCG
ACCAGATTTTGTGCTTCACTCGCAACGGAGTGGAGATCAGCGACAGGTCT
CAAATATTTTCCACTTGGTACTTCTACGGTACTCATTCATCGCATGTCAA
GAGCCATCTATTCTCCAATAGCTTGGTCCGACACATCGTGGATAGGGATT
TGAAGACCCTCCAGGAGTCGACCTACACGGCCATACCCTTACACTACGGA
CTCTTACATTCATCCATCAGTGTTCTGAACGGCGAAGGAAACGTGCCGAG
TTTTCTCGGCTACGGAGGGGTGGGCATCAGGGAGAGCCTGGTGGAAGAAA
GCAAGAATATGAGCTCGTGGGAGGGGCACCAATCCGGACGACGCTGGGAC
TTACTCGGGAAGGAGAGTCTACTCTACAAACTCTTCCGGTCCAGGCGAGC
GCTACGTGACGTCATGAAGCGCCACGGGATCGACCTGAAGTTGATGGAGG
CGCTTTTCAACCACATCATCGTCCACAGCATGGACCATCACGGCGGAGAT
GAGTCGTCGCATCTGAGGTATTCTCTCCATCCATGGCACACGGGATGTAC
CCCCTACCAGGCCTTCAAAACCAACATGTTCCGTGTCCTGATCATCCGGC
CCAACCTCAACCCGCTGGCACCGAACACCCTCCGCTCGATCAACAAGCCG
TTCTACCAGGACCTGTACCGCGAACTGAAGAAGATTGATCCAGAAGTGGC
GGAGGTAGCCACCGCTAGTGTCATGTACTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00011.0Blg00011.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00011.0-exon-Sc0000648-1570713199:26266..26408Blg00011.0-exon-Sc0000648-1570713199:26266..26408Branchiostoma lanceolatumexon
Blg00011.0-exon-Sc0000648-1570713199:26919..27413Blg00011.0-exon-Sc0000648-1570713199:26919..27413Branchiostoma lanceolatumexon
Blg00011.0-exon-Sc0000648-1570713199:27813..27941Blg00011.0-exon-Sc0000648-1570713199:27813..27941Branchiostoma lanceolatumexon
Blg00011.0-exon-Sc0000648-1570713199:28350..28563Blg00011.0-exon-Sc0000648-1570713199:28350..28563Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000648genomeSc0000648:26266..28563 +
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00011