Blg00010.1 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00010.1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000648:15735..20363-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00010.1 ID=Blg00010.1|Name=Blg00010.1|organism=Branchiostoma lanceolatum|type=mRNA|length=4629bp|location=Sequence derived from alignment at Sc0000648:15735..20363- (Branchiostoma lanceolatum)
AGATTCTTACACGTTTCCCCTCGGGCTTTTTTGGCAACAAGCAGGTGCAC GTTTTGCAGCGTTGACGGAACTATTTTTCCAAAAGATCGTTTCCTTGTCA GACAGTGGTCTCCATTGTCTTCATTGCTAATAAATACGCACCTGTGCCGC TGTTTCAGACAGATACCGACGGAGGGGGACGACGACTAGAGAAGATCTTA ACCAACCAACCAGCCAAGCTGTGCTCATCTTCGAATCTCAGCGGTCCACC CTACCGGCGTCAGTCTACAGCGGTACTGTGTCTTCATCGACATATCAACA GGTTATTTTAGTCTCTTTTATGGTTCAGCTTGTTCAGTTTTGCCGAAAAA TGCTTCGTAAAGGTGTGATTTTGTTGTACAGTCTTGATTTCGAATGGTGC ACTGAGGAGTATGCCAAGGTGAGTAGCCAAGCTATTCGGAAAAAAGTTGG CTCGTCGTGATAAAATGATCCCCATGCATATGTATAGCTTTGGCATATGT GTATCTTTTTGCTAATTTTGTGTTTCAAGTAATGCGTTCTCGCGTAAGGG AGAGATCTAGAGGTGCCAGATGTCCCCTTTACTCTCATTTGCTCCGAATC TATAAAAACTATGAAAATTCAAACATGATTTAACACAGTAAGCAATTTTT TACTTCCATACCAAGTTTGATAGCTACCTTCAGGGCCGTTGTACAGCAAA AGTGGCCTTGCTGGTGCGTTAAACTGAATTTGAACAACTACAGCAGTTCT GAGTCCTTGTACGCGTCAATAGTTGTACATTGCGAAATGCACTGCTGCCA GGAAAGTAAGGATAAGTAATGCCGCCTGGATCGTCGCAAGCATCCGTTCC TACATGTCCGACTTCACTTCTGTTTAAACGCGGCTCATGCTGTAAAGGTA GTTTTATCGGACAAAATATACGGCGACAAAACGTGCTATTTGATACACTT GTACTGTTGTGAATGGAATATTGATATGCGTATTGTGTCAGGCCTACTCT GTCAGTCCAGGTTCCACTTGCAGCTCACGGGGCCCTCAGGGCATCTCTGA TTGTGGCAGCTTGACGTACGTGCCCTTTAACAGACATGACTTATAGTAAG ATATATTGAGTCTGTTACTCATGTCAATCTAACGCAAGCGACATGATAGA ATTTATTTTTATTTGAGATCTGCGTACTTAACTTGTAAGTAGTCAATATC ACCAAATACAAATGTATGCAGCTTACTTCTGTTGTTTATTACGTTTAAGC TTTGTTTTGTTTTGCTTTGTTTTGTTTTAAGGCAGNAATTAATAATTGTT TTGTTTTCGTTTTAAGGCAGAAGAAAATGAGCTACACTGAGGACAAAAAG CCTCTCCCGATCCCTCTCCATACGGGACCGCCAGCAGATCCTGAAACTGA CTTCAAGGTACATGTATGCTTCAGATCCTGCGCCCTTACTAGTTGCTGTG CTTTCTTATTGTGTGTCACATATAACCAAGTTTTGAATGATCCATATGTT ATGACAGCAACTATAGTTTGCTCTACAATGTGTTATTCTCTCTACTCATG TTTACTGCAAACCTCCCAGGTATTTTCTCCAGGGTGATAGCAACTATCAT CATTATTTGTTCTACATTGTGTTATCAATATTTTTCAATATTAACTACAC TTGAACTAATTTTTTTCTGAAAACCGTCCTGATATTTTCTCCAGGGTTTG CTTTTCTATCGAAGTAGAATAATATTAACTCACCTGTTGTGTATGACATA GAATAAGCAGAGATATTAGCGTGACCTAATTGTTCACCTTTTCGCCTCTT TAGAACCTTGCTGGCTACCAGAAGAACCTGAAGAAATGGCTTATCGTGGG AGCCGTTTTCCTGGTGCTGCTGGTGACTGGAGCCACCCTGCTGGGCGTGT TTTTGTCCAGGAACCCCAACAGGATCCTTACGGTAAGAACTGACATGTTC TTTTCCATGGACCCGACTTAAACTTACGTTGATTTAGGTCTAGTAAATAA GCTTTTCAGTCTCCTCAAACCAATTGGAACATTTGTGTAATCATTCCTCT TCCACACTGACTATAAGATAGCGTGCGTAGTCCATGTGGTTAGCGATCTT GCCTCTGGAACTAGAAGCCCCGGGTTCGATCCCGGCTGTGTCGCTCACCC GACATGCACGCTACCGTTAAAGATCGCAGTCCTTAGGACGGGACGTTAAG CCGTGGTCCACTGTTCATTGTGCTTGTCGAAAAGAGCTATGGGAATTTCC CCGGTACAATGAACCTGTATAAACTGTACATAGCGTCTGTCTCCTCTGTC ACGACCAGTGGAAGAGTAGCTCATCTGTTCAATGAGTTCATTTGAGCTAA ACTGATTCGAGATTCCTTTCCTTTATCAGGCGGAAAAAAAGCTGAAGTAT GACGGGAAAGTCATCGAGGAGAAGGTGGAGGTCGATGTCAACTTGAAGAC TGAGACTTTCTACACCAAGAGTGAAGATGGAGAAACCGCCATCATGTATG ACACCAAAAATGTGAGAAGAAGCTCATTCAGCCATGATTTATTGCCTTTG TAGTTTTGTAATGGAAGCTGCTATCTGGTTATGCCTCTATTTCTTTCTGG CTACACGTTACTTTCCAGCAGAGCATTGGTTTCGGCTGTTCTTGACGTGC TTTGAGGCGTTTTTGTCGGACTTTCTACTTTGTCGTATTTTTTTTTCTAA AGCCACCCCCCACCCGAAAAGATGACAAGTAGAAAGCCCGACAAAAACTC CTAAAAACACGTCAGAAACCAGCCGAAACCAATGCTCTGCTTGGAGAGTA GCTACATGTGTATGTTTTCTGGAGGCTTTGCTCATTTTGAGATGATATTC GATATTCTAATAGGCATGGTATATTGACCCTATCTTGAATTCTGCAATTT CATCTGTGGTTGTAGGATTTGGCTGCATACAAGTTTTCCGGCCTCCATAT TTGCTTCATCTTGGAGGACAGCACCTACAGTGAGGATGACGTAGACAAAA TGGCAAACGAGGTGCAGAAAGATGACGAAGTAAGGGAACACCAATCTTAC TTTGACTCCATTATTTTCTGTGTGAAAAGTAGTTTCAGGTCGTTACTAAA GCAACCATAGAACCTGAGTCAAAATATAGTCTCCGGGACACTCGGTATCG TTAGAAGGAGTGAAAATCCTTGATTCGGAACCGGATTTCTTTGCAAGAGG AGTAAAGGAGGCAATCTGCATCAGAGCCCACAGACCTACCTTGAACAGAG ACGGGGGGAGACACAAGTTATCTGGCACGTACGATCCGCTACTGCGATCA CGTGTCGCTGACGTCACGTTGCAGTAGCCGGGTTCATTCCGTGAGCAGGG TTGATGGAGTCAACCGAAAATTTGGGTAAGTCTCAATTTCTCTTACAGTC TTGGACGAAACGTTTAGTCTTGTTAATAATTAATCGTTTTTGTCTGTTAA ACAGGGCAAAGTTGAGGAGGCTGAGAGCGGGGGAGAAGTGAACATCACCT TGGATGAAAGCCGTGGAAAGGTCGACAAATCCATCCTGAATGAGAAGATG CTCGACTTCTGCAAGGCTCACGAGATCTACTGGGCCATCGCTCGCCAGGG AGGGCAGCCAGCCACTGAAACCGGTAAGGACACATTTTTCAGCGACTAGA TTTCAGCCAAAGCGATTATCATGGTACTATTTGAGCCACAAGGAATAAAC TGATTTGTAGCTGTCCCAGTGGAGTTCTCTTTTTACCGTATATTCTGTTA ATTCTGCTGATTTTCCTGTCATATCACTCTTGAAAACTGATCATGTATCC TAAAGTACGTTATTGCTTGTTTCAGGTGCTGCAAACAGCCGCCAGAAGCG AGGACTACTGTGCCTTAAATACCGATGCTATTTGATTTGTTACAATGGGC GTTGCGTAATCTTTTGCTACCGTTACTGGTGGCCCTGCTATGGGTAAATT CCGTACATGTTAATTTACCCAATCCAGGATGGAGCCATGACATTTACATT TAATGTCAGAATGGCTGAAAAGTCAACAATAAATGCCATGCTCACGATAC GTTGTAGTAGATTGCAATACTCAAGAAAGAGTATTATTTTTTATAAGTCT TTCGTAACGTTTGAATCATACTAATACAGCGGTGTTAGAAATATTGTTGG TTTGGGATGAGCTATAACTGCAAAACAGTATGCATTAACAGCTTTTATAC AGAGGCTAGATGCGGTGTAGTAATCAATACAGATTTCAATCATATGTAAA GGAAAACTGTTGTTTTCTACCTTTCGTCAGTTTCCAAATGACCTTTACCT TATTTCTCAAACAAGCATATGTTGTAATGTAACCAAGATTTTGGCAATAT GGTGCATGTTACAAAGCATTACATCAGGTGCAATCAAAAGATATGAAAAA TCAGCTCAAAATGTTTTGTTGTTTCTCAAGTTTTTCAAATAGAAAAGACG GAAGAGAGTTTCTAAAGAAAGCATGATATAGTTAACAAATGCATGTATAT CTTAGGCCACAGCAAGTAAATTTTATGGATGACATCCTCGGCAGACCCCA AAATTAATGAGATAGGGCGGAAAAAAAACAAGGCGGGCCAAAAAAAACAA GATTCCTATATTTTCAAATTTTGAGATCA

Coding sequence (CDS) from alignment at Sc0000648:15735..20363-

>Blg00010.1 ID=Blg00010.1|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=747bp|location=Sequence derived from alignment at Sc0000648:15735..20363- (Branchiostoma lanceolatum)
ATGAGCTACACTGAGGACAAAAAGCCTCTCCCGATCCCTCTCCATACGGG
ACCGCCAGCAGATCCTGAAACTGACTTCAAGAACCTTGCTGGCTACCAGA
AGAACCTGAAGAAATGGCTTATCGTGGGAGCCGTTTTCCTGGTGCTGCTG
GTGACTGGAGCCACCCTGCTGGGCGTGTTTTTGTCCAGGAACCCCAACAG
GATCCTTACGGCGGAAAAAAAGCTGAAGTATGACGGGAAAGTCATCGAGG
AGAAGGTGGAGGTCGATGTCAACTTGAAGACTGAGACTTTCTACACCAAG
AGTGAAGATGGAGAAACCGCCATCATGTATGACACCAAAAATGATTTGGC
TGCATACAAGTTTTCCGGCCTCCATATTTGCTTCATCTTGGAGGACAGCA
CCTACAGTGAGGATGACGTAGACAAAATGGCAAACGAGGTGCAGAAAGAT
GACGAAGGCAAAGTTGAGGAGGCTGAGAGCGGGGGAGAAGTGAACATCAC
CTTGGATGAAAGCCGTGGAAAGGTCGACAAATCCATCCTGAATGAGAAGA
TGCTCGACTTCTGCAAGGCTCACGAGATCTACTGGGCCATCGCTCGCCAG
GGAGGGCAGCCAGCCACTGAAACCGGTGCTGCAAACAGCCGCCAGAAGCG
AGGACTACTGTGCCTTAAATACCGATGCTATTTGATTTGTTACAATGGGC
GTTGCGTAATCTTTTGCTACCGTTACTGGTGGCCCTGCTATGGGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00010.1Blg00010.1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00010.1-exon-Sc0000648-1570713199:20092..20363Blg00010.1-exon-Sc0000648-1570713199:20092..20363Branchiostoma lanceolatumexon
Blg00010.1-exon-Sc0000648-1570713199:18957..19047Blg00010.1-exon-Sc0000648-1570713199:18957..19047Branchiostoma lanceolatumexon
Blg00010.1-exon-Sc0000648-1570713199:18432..18560Blg00010.1-exon-Sc0000648-1570713199:18432..18560Branchiostoma lanceolatumexon
Blg00010.1-exon-Sc0000648-1570713199:17853..17984Blg00010.1-exon-Sc0000648-1570713199:17853..17984Branchiostoma lanceolatumexon
Blg00010.1-exon-Sc0000648-1570713199:17335..17448Blg00010.1-exon-Sc0000648-1570713199:17335..17448Branchiostoma lanceolatumexon
Blg00010.1-exon-Sc0000648-1570713199:16741..16909Blg00010.1-exon-Sc0000648-1570713199:16741..16909Branchiostoma lanceolatumexon
Blg00010.1-exon-Sc0000648-1570713199:15735..16538Blg00010.1-exon-Sc0000648-1570713199:15735..16538Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000648genomeSc0000648:15735..20363 -
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00010