Blg00010.0 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00010.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000648:15735..20075-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00010.0 ID=Blg00010.0|Name=Blg00010.0|organism=Branchiostoma lanceolatum|type=mRNA|length=4341bp|location=Sequence derived from alignment at Sc0000648:15735..20075- (Branchiostoma lanceolatum)
GACATATCAACAGGTTATTTTAGTCTCTTTTATGGTTCAGCTTGTTCAGT TTTGCCGAAAAATGCTTCGTAAAGGTGTGATTTTGTTGTACAGTCTTGAT TTCGAATGGTGCACTGAGGAGTATGCCAAGGTGAGTAGCCAAGCTATTCG GAAAAAAGTTGGCTCGTCGTGATAAAATGATCCCCATGCATATGTATAGC TTTGGCATATGTGTATCTTTTTGCTAATTTTGTGTTTCAAGTAATGCGTT CTCGCGTAAGGGAGAGATCTAGAGGTGCCAGATGTCCCCTTTACTCTCAT TTGCTCCGAATCTATAAAAACTATGAAAATTCAAACATGATTTAACACAG TAAGCAATTTTTTACTTCCATACCAAGTTTGATAGCTACCTTCAGGGCCG TTGTACAGCAAAAGTGGCCTTGCTGGTGCGTTAAACTGAATTTGAACAAC TACAGCAGTTCTGAGTCCTTGTACGCGTCAATAGTTGTACATTGCGAAAT GCACTGCTGCCAGGAAAGTAAGGATAAGTAATGCCGCCTGGATCGTCGCA AGCATCCGTTCCTACATGTCCGACTTCACTTCTGTTTAAACGCGGCTCAT GCTGTAAAGGTAGTTTTATCGGACAAAATATACGGCGACAAAACGTGCTA TTTGATACACTTGTACTGTTGTGAATGGAATATTGATATGCGTATTGTGT CAGGCCTACTCTGTCAGTCCAGGTTCCACTTGCAGCTCACGGGGCCCTCA GGGCATCTCTGATTGTGGCAGCTTGACGTACGTGCCCTTTAACAGACATG ACTTATAGTAAGATATATTGAGTCTGTTACTCATGTCAATCTAACGCAAG CGACATGATAGAATTTATTTTTATTTGAGATCTGCGTACTTAACTTGTAA GTAGTCAATATCACCAAATACAAATGTATGCAGCTTACTTCTGTTGTTTA TTACGTTTAAGCTTTGTTTTGTTTTGCTTTGTTTTGTTTTAAGGCAGNAA TTAATAATTGTTTTGTTTTCGTTTTAAGGCAGAAGAAAATGAGCTACACT GAGGACAAAAAGCCTCTCCCGATCCCTCTCCATACGGGACCGCCAGCAGA TCCTGAAACTGACTTCAAGGTACATGTATGCTTCAGATCCTGCGCCCTTA CTAGTTGCTGTGCTTTCTTATTGTGTGTCACATATAACCAAGTTTTGAAT GATCCATATGTTATGACAGCAACTATAGTTTGCTCTACAATGTGTTATTC TCTCTACTCATGTTTACTGCAAACCTCCCAGGTATTTTCTCCAGGGTGAT AGCAACTATCATCATTATTTGTTCTACATTGTGTTATCAATATTTTTCAA TATTAACTACACTTGAACTAATTTTTTTCTGAAAACCGTCCTGATATTTT CTCCAGGGTTTGCTTTTCTATCGAAGTAGAATAATATTAACTCACCTGTT GTGTATGACATAGAATAAGCAGAGATATTAGCGTGACCTAATTGTTCACC TTTTCGCCTCTTTAGAACCTTGCTGGCTACCAGAAGAACCTGAAGAAATG GCTTATCGTGGGAGCCGTTTTCCTGGTGCTGCTGGTGACTGGAGCCACCC TGCTGGGCGTGTTTTTGTCCAGGAACCCCAACAGGATCCTTACGGTAAGA ACTGACATGTTCTTTTCCATGGACCCGACTTAAACTTACGTTGATTTAGG TCTAGTAAATAAGCTTTTCAGTCTCCTCAAACCAATTGGAACATTTGTGT AATCATTCCTCTTCCACACTGACTATAAGATAGCGTGCGTAGTCCATGTG GTTAGCGATCTTGCCTCTGGAACTAGAAGCCCCGGGTTCGATCCCGGCTG TGTCGCTCACCCGACATGCACGCTACCGTTAAAGATCGCAGTCCTTAGGA CGGGACGTTAAGCCGTGGTCCACTGTTCATTGTGCTTGTCGAAAAGAGCT ATGGGAATTTCCCCGGTACAATGAACCTGTATAAACTGTACATAGCGTCT GTCTCCTCTGTCACGACCAGTGGAAGAGTAGCTCATCTGTTCAATGAGTT CATTTGAGCTAAACTGATTCGAGATTCCTTTCCTTTATCAGGCGGAAAAA AAGCTGAAGTATGACGGGAAAGTCATCGAGGAGAAGGTGGAGGTCGATGT CAACTTGAAGACTGAGACTTTCTACACCAAGAGTGAAGATGGAGAAACCG CCATCATGTATGACACCAAAAATGTGAGAAGAAGCTCATTCAGCCATGAT TTATTGCCTTTGTAGTTTTGTAATGGAAGCTGCTATCTGGTTATGCCTCT ATTTCTTTCTGGCTACACGTTACTTTCCAGCAGAGCATTGGTTTCGGCTG TTCTTGACGTGCTTTGAGGCGTTTTTGTCGGACTTTCTACTTTGTCGTAT TTTTTTTTCTAAAGCCACCCCCCACCCGAAAAGATGACAAGTAGAAAGCC CGACAAAAACTCCTAAAAACACGTCAGAAACCAGCCGAAACCAATGCTCT GCTTGGAGAGTAGCTACATGTGTATGTTTTCTGGAGGCTTTGCTCATTTT GAGATGATATTCGATATTCTAATAGGCATGGTATATTGACCCTATCTTGA ATTCTGCAATTTCATCTGTGGTTGTAGGATTTGGCTGCATACAAGTTTTC CGGCCTCCATATTTGCTTCATCTTGGAGGACAGCACCTACAGTGAGGATG ACGTAGACAAAATGGCAAACGAGGTGCAGAAAGATGACGAAGTAAGGGAA CACCAATCTTACTTTGACTCCATTATTTTCTGTGTGAAAAGTAGTTTCAG GTCGTTACTAAAGCAACCATAGAACCTGAGTCAAAATATAGTCTCCGGGA CACTCGGTATCGTTAGAAGGAGTGAAAATCCTTGATTCGGAACCGGATTT CTTTGCAAGAGGAGTAAAGGAGGCAATCTGCATCAGAGCCCACAGACCTA CCTTGAACAGAGACGGGGGGAGACACAAGTTATCTGGCACGTACGATCCG CTACTGCGATCACGTGTCGCTGACGTCACGTTGCAGTAGCCGGGTTCATT CCGTGAGCAGGGTTGATGGAGTCAACCGAAAATTTGGGTAAGTCTCAATT TCTCTTACAGTCTTGGACGAAACGTTTAGTCTTGTTAATAATTAATCGTT TTTGTCTGTTAAACAGGGCAAAGTTGAGGAGGCTGAGAGCGGGGGAGAAG TGAACATCACCTTGGATGAAAGCCGTGGAAAGGTCGACAAATCCATCCTG AATGAGAAGATGCTCGACTTCTGCAAGGCTCACGAGATCTACTGGGCCAT CGCTCGCCAGGGAGGGCAGCCAGCCACTGAAACCGGTAAGGACACATTTT TCAGCGACTAGATTTCAGCCAAAGCGATTATCATGGTACTATTTGAGCCA CAAGGAATAAACTGATTTGTAGCTGTCCCAGTGGAGTTCTCTTTTTACCG TATATTCTGTTAATTCTGCTGATTTTCCTGTCATATCACTCTTGAAAACT GATCATGTATCCTAAAGTACGTTATTGCTTGTTTCAGGTGCTGCAAACAG CCGCCAGAAGCGAGGACTACTGTGCCTTAAATACCGATGCTATTTGATTT GTTACAATGGGCGTTGCGTAATCTTTTGCTACCGTTACTGGTGGCCCTGC TATGGGTAAATTCCGTACATGTTAATTTACCCAATCCAGGATGGAGCCAT GACATTTACATTTAATGTCAGAATGGCTGAAAAGTCAACAATAAATGCCA TGCTCACGATACGTTGTAGTAGATTGCAATACTCAAGAAAGAGTATTATT TTTTATAAGTCTTTCGTAACGTTTGAATCATACTAATACAGCGGTGTTAG AAATATTGTTGGTTTGGGATGAGCTATAACTGCAAAACAGTATGCATTAA CAGCTTTTATACAGAGGCTAGATGCGGTGTAGTAATCAATACAGATTTCA ATCATATGTAAAGGAAAACTGTTGTTTTCTACCTTTCGTCAGTTTCCAAA TGACCTTTACCTTATTTCTCAAACAAGCATATGTTGTAATGTAACCAAGA TTTTGGCAATATGGTGCATGTTACAAAGCATTACATCAGGTGCAATCAAA AGATATGAAAAATCAGCTCAAAATGTTTTGTTGTTTCTCAAGTTTTTCAA ATAGAAAAGACGGAAGAGAGTTTCTAAAGAAAGCATGATATAGTTAACAA ATGCATGTATATCTTAGGCCACAGCAAGTAAATTTTATGGATGACATCCT CGGCAGACCCCAAAATTAATGAGATAGGGCGGAAAAAAAACAAGGCGGGC CAAAAAAAACAAGATTCCTATATTTTCAAATTTTGAGATCA

Coding sequence (CDS) from alignment at Sc0000648:15735..20075-

>Blg00010.0 ID=Blg00010.0|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=747bp|location=Sequence derived from alignment at Sc0000648:15735..20075- (Branchiostoma lanceolatum)
ATGAGCTACACTGAGGACAAAAAGCCTCTCCCGATCCCTCTCCATACGGG
ACCGCCAGCAGATCCTGAAACTGACTTCAAGAACCTTGCTGGCTACCAGA
AGAACCTGAAGAAATGGCTTATCGTGGGAGCCGTTTTCCTGGTGCTGCTG
GTGACTGGAGCCACCCTGCTGGGCGTGTTTTTGTCCAGGAACCCCAACAG
GATCCTTACGGCGGAAAAAAAGCTGAAGTATGACGGGAAAGTCATCGAGG
AGAAGGTGGAGGTCGATGTCAACTTGAAGACTGAGACTTTCTACACCAAG
AGTGAAGATGGAGAAACCGCCATCATGTATGACACCAAAAATGATTTGGC
TGCATACAAGTTTTCCGGCCTCCATATTTGCTTCATCTTGGAGGACAGCA
CCTACAGTGAGGATGACGTAGACAAAATGGCAAACGAGGTGCAGAAAGAT
GACGAAGGCAAAGTTGAGGAGGCTGAGAGCGGGGGAGAAGTGAACATCAC
CTTGGATGAAAGCCGTGGAAAGGTCGACAAATCCATCCTGAATGAGAAGA
TGCTCGACTTCTGCAAGGCTCACGAGATCTACTGGGCCATCGCTCGCCAG
GGAGGGCAGCCAGCCACTGAAACCGGTGCTGCAAACAGCCGCCAGAAGCG
AGGACTACTGTGCCTTAAATACCGATGCTATTTGATTTGTTACAATGGGC
GTTGCGTAATCTTTTGCTACCGTTACTGGTGGCCCTGCTATGGGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00010.0Blg00010.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00010.0-exon-Sc0000648-1570713199:20063..20075Blg00010.0-exon-Sc0000648-1570713199:20063..20075Branchiostoma lanceolatumexon
Blg00010.0-exon-Sc0000648-1570713199:18957..19047Blg00010.0-exon-Sc0000648-1570713199:18957..19047Branchiostoma lanceolatumexon
Blg00010.0-exon-Sc0000648-1570713199:18432..18560Blg00010.0-exon-Sc0000648-1570713199:18432..18560Branchiostoma lanceolatumexon
Blg00010.0-exon-Sc0000648-1570713199:17853..17984Blg00010.0-exon-Sc0000648-1570713199:17853..17984Branchiostoma lanceolatumexon
Blg00010.0-exon-Sc0000648-1570713199:17335..17448Blg00010.0-exon-Sc0000648-1570713199:17335..17448Branchiostoma lanceolatumexon
Blg00010.0-exon-Sc0000648-1570713199:16741..16909Blg00010.0-exon-Sc0000648-1570713199:16741..16909Branchiostoma lanceolatumexon
Blg00010.0-exon-Sc0000648-1570713199:15735..16538Blg00010.0-exon-Sc0000648-1570713199:15735..16538Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000648genomeSc0000648:15735..20075 -
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00010