Blg00006.0 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00006.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000648:65077..69111-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00006.0 ID=Blg00006.0|Name=Blg00006.0|organism=Branchiostoma lanceolatum|type=mRNA|length=4035bp|location=Sequence derived from alignment at Sc0000648:65077..69111- (Branchiostoma lanceolatum)
ATGGCGACAGAAGCTTGGGTACCAACTCCGCTGAGCATACGAGAGAAGGT TTTCTATGGAGTGGGGTCGCTGGCCTTCGTTCTACCAAACAACATCCTGA ATTTCTACTTCAACTACTTCATGCTGTTGGTGGCTCAGGTTAGTAAACCA GATAGGTAGTTATCGACATTGTAAATATTTAAAAGCCGTTCAATAGAATT CAAGTTTCTCTTCACTGTCACCTGCACGCAGTGGCACGACAATGACTTGC CACGGATGTGTCAGCACTGGGGCCGGTAAACCGCCTAAGCCGGTCTGTCG AGATTAGTTACCAGGCTACAAAAGAAGGGGCTTAACCATTGTTTCTAGTA TAGGGGAAAACACAAAGAATCAGAGCTTATCTACATAGTCAGACCATATT AGCTCTTGAGGTCTGTGATGTTTTAACAGTTTGAACCAAAGGTATATATA ATATATATTTTTGCCAAGAAATGACAACTATAGAAAAAGAAATGGTTCGG GATTATTTTATCAATGTTTAGTTAATTTTGTAATGATATTAGCCCCTCTA GTTTTCAATATTCTGTGAAGATGTTATTTGTTGTCCGTTCCCGCCCAAGT CGGAACGCTGATAACCTTGTTTACTGTTCCTAGGTCCCACCCAGCATGTT GCTGGTACTTGGGACGCTGACAAAAGCAGTGGACGTCGTAGCCAACCTCG TCGTCAGCCCCTTTGTCGGACGAAAGGACACCAAATGGGGCAGATTAAAA CCATGGGAAGTACTGAGCGAAACTCATATTGCAACCAGAGTCCCACGAAC TCACACCTCCGCCAAATGAGGATTCATGTAACCTTTACAACTGACGTATT ATACATTTTTCTCCTCGGTCGTCATTTGCATAAATCATATCAGTCAATCA TCTTTGCCACTTTGATGACAGAAGTTTGTCAAAGTATGAGTCTTATCTTA ACAAATAAGGCTATGCTAGCATTGCCTCAGAAATTATGCAAATGATTTGC ACCATCTGTTTTTAACGATGGACACCTAATCTCTAAACTTCTAAATGTCG CAAGTAGTTCTTCATTTGCATAATTTCTGTCTATCGATGTTTCTCTCTTT CTCAGTTACATATGTTTGAATAGTCCTATCATGGAACCGATTTATACCAA TTGCTAGATAATACGAATTAATTAGCATTTGATTAGGTCAAGCATCATTT AAGATATCTTCTTACCAAAAAATCACGACGACCCATCAACCCCTTCTTGA GTTATTCTTTTTTTTTAAGTTTCAAACAAAATCGGCCCCTGCAGTTCCAA GAAAAGCCGCATTATGTGACACGATGTGGCACGTCAATAATACGTCACCC AAGTGGGTTTCCACCGTCAAATCTAGGTACTCATTGTCAACCTCCATGTT GGTGTCCCTACGACGACACGTGAAAACGCTTTGAAAATGCTGCTGTCCTT GCCTCCACAGGATTCTTGGCGGGAGTGTGATTGCCATCCCGACATACCTA CTGATGTGGGTGGTTCCTGACACTACAGCGGGCGGGAAACTTGCGTACTA CCTCGACATCTACACCGTGAAGTCTTTATCCGTCACGGTAATGAGATTCA GTTGCCAAGATTTAAAGTATAACCGTTATTCTTGGTTGGTCCTTGATTCA TTTTAGTGTCTCCGAAACAAACATGAGGAACGTAAAACACAATATATAGA CTATCAGCTGTAAATACTGTGCTTGTGAAATTCACAGAAAGATGACTTAG TTCTTCATTTTCCCGGGACTTCTACGGCGAAGATAGAAACATCAGCTAGC CAAACATTGACGTGGTTAAATAACGACCCCATGTGACTGTCACGCAATAT TGATAAGCTTATCCTGGCATTGTTGGTTGCTGTTCAATGATTAAGTATTG TTTAGCTGTTTGAATGAAAGCGATCCTTTGGCCATCGCTGACCCAAGAAA TTCGTAGTCAACAAATTCAACAAGATCTACAGGAGATCTTCTAGGGACCT CTAATGAGCAACCATATGGGGGCCATGGCGAGTACATTGAGAGCTCATTG TGCGACCGCTGACCTATCTGACCAATTCTGATCACTCAGTTATTGTCCAA TGGTCGCCGCCTCAGTGAAACATTGGTTTAAAACGTTAATACTATTCCTT ATCTTTCTTTACCAACAGGCAGTTACGCTGGGTCTCCGAACACTCATCAT GTACATGACTGATGACAGTAGGGAGAGGGACTCTGCACTAGGATACAGTA AGTACTTACTAAACTGTTTCAGGTTATGTTCTCAATGTGGCTAGTAAAGA TTTCACTTGGGAATCAGTAGGGCCGTGTGGCGTAACGGCAGGATTTTCAA CTCAGAACCAAGGGGTTCCGGGTTCAAATCCCCTGCTGCCACCAATCTTG TGCCTTTGGGAAAAAAGGGCACTTAACACGATTTTCCCCACTCCACCCAA GTGTAAAAATCAGATACTTTATGTGTGTGGGTCACGACATCAGCAATAGC TGCCTGTGTCCCACGTGTGTTGCACTGTTGCAATTCCAATAAATCCAAAT CCAAATCCAAAATCCCCTGGCCTACATAAGTTATTGTAGGAAACTAAAAT TGCACATATATGATATCAAACCATTGATATGCATGTGCAATTTTAGCATC TTACAATAACTGGGCGTGGGTCGGGTAAAATCGATATTGAACACATTAGC ATGAAAGATAATCTGAGTTGGTAAAATACGTAATGAGAAATAAACCTAAA AAAAAATACACAAACGGGTGGCGGTACCAACTTCCGACAACCTTTGACCT AGCGGTGACGTCACGTTGGCAATCACGTGTCCACAGCGCTTGGGTCAAAT AGCTGATGATGACCGAAAATTCCGGTGAGTGAAATTTTTTTAGTTAACAG TTTATTTCTCATTACGATATTGAACAAGACATTTTGAGCTGCCTAAAACT GCAAAAAAAAGAGACACAAATCACGTTTGTTACTAAATTTACAGGAATCG TATTTGAAGTTAGCGGGCTGGTCCTGGGCATGGGACTGCAGGGACTTATC GTAGGGGGGTTCGGAGGTTCCGTGTCGTCTTCATCTTGTGCTAATATCAC TGTTAGTAACAGCAGTGATGTCGGCACGGACATGGCCATTCTACAAACAC AGGTATTTGTGTTTGTGTCCTATCAGTTATATGTAGTTAGGGTGCGCTTA CAGGGAAACGAAACCTACTATCTATGTATCGAATGCTTTCATTTACTTGT TAGCTGTTGTATATATCTCACCTGTGTATATACGTATATGACTGTTTGAA TCATATTCCTTTCTTGTCTGATGGCACGTTAATATAAGTTGTATTAACCA GAGTGCGTCGCCATCTTGTCTGTATTTGTTACCTATGTTGTTTAATGAAA AATAAAAAATAAACTACTTGAGCAAGACTAATCACTGATTGACAGGCGTA AATCCATTATAGAATTTCATTTAGATGGGTATTATGATTTAATATCCTAG TACCAGCACATCCTGTCAATAACACATTTTTCACTATTGACAGGAACATA AAAGCCACGGCATATTCTGAATGGTACATGATCTCTGTGTTAGTCTGCTA ATATGCTCATCGGATCGCGGAACAAACATTGAAAAACTAGCGGATGTTTT CTTTCCTTTATGTCCAGAGAACCGGCTACCTTGTGGCCGGTGGAAGTGTC TGCGCCTGCTGCGTACTTGCTGTCATGGCGGTTCTTTTAGGAGTCACAGA ACGAAAAGGTTTGTGAAGTAATTACATTTATTTTCCCGGATAGCAAAGTT TTTGGTTGTTGTACACAACCAAGTGTTTTTGCCTAGCTGACGTTTCGTGG GAACGTATTTCCTCGGGGCAATACTGACAGCATCGGCTAGGTGTCGCTGC TGTAGGGTGGCACAAAACGTAACTGAGTTTATACTCCCCTATATCGCTCT TCATCACTTGATGTGGTGAAGAGTGACTGGAGTATATTTTCTGATCAATA CAGCCCCCTTAGCCCTTGTCCTGCGGGACCTATGA

Coding sequence (CDS) from alignment at Sc0000648:65077..69111-

>Blg00006.0 ID=Blg00006.0|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=642bp|location=Sequence derived from alignment at Sc0000648:65077..69111- (Branchiostoma lanceolatum)
ATGGCGACAGAAGCTTGGGTACCAACTCCGCTGAGCATACGAGAGAAGGT
TTTCTATGGAGTGGGGTCGCTGGCCTTCGTTCTACCAAACAACATCCTGA
ATTTCTACTTCAACTACTTCATGCTGTTGGTGGCTCAGGTTAGTAAACCA
GATAGGATTCTTGGCGGGAGTGTGATTGCCATCCCGACATACCTACTGAT
GTGGGTGGTTCCTGACACTACAGCGGGCGGGAAACTTGCGTACTACCTCG
ACATCTACACCGTGAAGTCTTTATCCGTCACGGCAGTTACGCTGGGTCTC
CGAACACTCATCATGTACATGACTGATGACAGTAGGGAGAGGGACTCTGC
ACTAGGATACAGAATCGTATTTGAAGTTAGCGGGCTGGTCCTGGGCATGG
GACTGCAGGGACTTATCGTAGGGGGGTTCGGAGGTTCCGTGTCGTCTTCA
TCTTGTGCTAATATCACTGTTAGTAACAGCAGTGATGTCGGCACGGACAT
GGCCATTCTACAAACACAGAGAACCGGCTACCTTGTGGCCGGTGGAAGTG
TCTGCGCCTGCTGCGTACTTGCTGTCATGGCGGTTCTTTTAGGAGTCACA
GAACGAAAAGCCCCCTTAGCCCTTGTCCTGCGGGACCTATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00006.0Blg00006.0-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00006.0-exon-Sc0000648-1570713199:68957..69111Blg00006.0-exon-Sc0000648-1570713199:68957..69111Branchiostoma lanceolatumexon
Blg00006.0-exon-Sc0000648-1570713199:67525..67651Blg00006.0-exon-Sc0000648-1570713199:67525..67651Branchiostoma lanceolatumexon
Blg00006.0-exon-Sc0000648-1570713199:66865..66943Blg00006.0-exon-Sc0000648-1570713199:66865..66943Branchiostoma lanceolatumexon
Blg00006.0-exon-Sc0000648-1570713199:65960..66117Blg00006.0-exon-Sc0000648-1570713199:65960..66117Branchiostoma lanceolatumexon
Blg00006.0-exon-Sc0000648-1570713199:65354..65444Blg00006.0-exon-Sc0000648-1570713199:65354..65444Branchiostoma lanceolatumexon
Blg00006.0-exon-Sc0000648-1570713199:65077..65108Blg00006.0-exon-Sc0000648-1570713199:65077..65108Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000648genomeSc0000648:65077..69111 -
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00006