Blg00002.0 (mRNA) - B. lanceolatum

Overview
Name
Unique NameBlg00002.0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at xfSc0001385:289..1463+

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>Blg00002.0 ID=Blg00002.0|Name=Blg00002.0|organism=Branchiostoma lanceolatum|type=mRNA|length=1175bp|location=Sequence derived from alignment at xfSc0001385:289..1463+ (Branchiostoma lanceolatum)
GGAGTTCTTGAGACTGGGATCTCCCTTGTGCTGTGATCCGTGGGATGACA AATTCAACCAAGTGGACCAAAAGGAAGAGGACTCACAAAGCTTAGTTTCT GACAATGACTCTGTGTGCAAAGCCAACGGGGACCTGGCACTGTTGTCTGA CCCTCGAGTTATCAAAACCACACCGAATCTGCTCAAAGCAGGAGGCGACG CAGTCCCTCTCACCAGAGTCAAGTGTCTGGTCTCCATGACGACACCGCGG GACGTACGTCTGCACGGAGCCTCTGTCATGCCAGCGTTTGTGGAATTCGA CATGGGGCCGGAGGGGTTTGGGTGCTTGTACATGCCTAATATAGCTCCCC AAGGCCCCCCTGCTGCCTCTGTTATTGGCGTGACGTCGGTGGGCGGACCG GGAGATGCAAACATTGTGTGTGGTATCGGAACAGGTGGGTTTGAAATGGA AAATCGGGTAATTGGAGAAATTTAGAGATACAAACTTTGACTATCATTTA TTCTTTCTGTTCTTTTGTATGGGGAAATCTACATACATGTGGTAGCGTTG AATGACTGAGTTGATAGGCTAGTAGACACGACATCGAGAGATGTCACAGG TTTGATTCCTGACATTCCTGTCTGGACATTGTGTCCTTTGGAAAGGCATT TTACACGACCTTTCTCACTCCACCCAGGTTTAAAAATGGCTACCTGACTT TGGTTGGGAAGGTTAAAGGCATCTTCCAATACCGTGCCCCACAAAGGATT AACAACAAACTACCGATGCGGCTTTAAAAAAGACTGTAGAACCTTTAACA TCTACAGAACTTAAAAGAAAAAACAATTTGACCGTTCTTGGTTGCAAATG TGCTAGATGTTGGCACATCGACAACCAAATCCGTAGTGTGTTTTGGCAGA CCTTAACGTATGTTGTAACATCATTATTCTGTTTTCCAGGAGACCGCCTG TTCCCACCCTTATCAGGGCTGACCTTCTCTGCCTGGGTGTGTATTGACCG TTACAGCTCCCCTCTAGCGGACCCCCACCCTGTCCGCCTGCTGACCCTGG TGAGGAACGTCCTGGGCACGGACCTGCACTACGTGTGTCTGTCTGTCAAC ATCAGCTCTAGGGACAGGAACATCATCGTCAGCACACAGGAGGAACTACT GCAGTATATCGGTATGTACATATAG

Coding sequence (CDS) from alignment at xfSc0001385:289..1463+

>Blg00002.0 ID=Blg00002.0|Name=|organism=Branchiostoma lanceolatum|type=CDS|length=670bp|location=Sequence derived from alignment at xfSc0001385:289..1463+ (Branchiostoma lanceolatum)
GGAGTTCTTGAGACTGGGATCTCCCTTGTGCTGTGATCCGTGGGATGACA
AATTCAACCAAGTGGACCAAAAGGAAGAGGACTCACAAAGCTTAGTTTCT
GACAATGACTCTGTGTGCAAAGCCAACGGGGACCTGGCACTGTTGTCTGA
CCCTCGAGTTATCAAAACCACACCGAATCTGCTCAAAGCAGGAGGCGACG
CAGTCCCTCTCACCAGAGTCAAGTGTCTGGTCTCCATGACGACACCGCGG
GACGTACGTCTGCACGGAGCCTCTGTCATGCCAGCGTTTGTGGAATTCGA
CATGGGGCCGGAGGGGTTTGGGTGCTTGTACATGCCTAATATAGCTCCCC
AAGGCCCCCCTGCTGCCTCTGTTATTGGCGTGACGTCGGTGGGCGGACCG
GGAGATGCAAACATTGTGTGTGGTATCGGAACAGGAGACCGCCTGTTCCC
ACCCTTATCAGGGCTGACCTTCTCTGCCTGGGTGTGTATTGACCGTTACA
GCTCCCCTCTAGCGGACCCCCACCCTGTCCGCCTGCTGACCCTGGTGAGG
AACGTCCTGGGCACGGACCTGCACTACGTGTGTCTGTCTGTCAACATCAG
CTCTAGGGACAGGAACATCATCGTCAGCACACAGGAGGAACTACTGCAGT
ATATCGGTATGTACATATAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
Blg00002.0-exon-xfSc0001385-1570713199:289..722Blg00002.0-exon-xfSc0001385-1570713199:289..722Branchiostoma lanceolatumexon
Blg00002.0-exon-xfSc0001385-1570713199:1228..1463Blg00002.0-exon-xfSc0001385-1570713199:1228..1463Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
Blg00002.0Blg00002.0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0001385genomexfSc0001385:289..1463 +
Spatial Expression
in the tripal_feature_cv_term.tpl.php
Properties
Property NameValue
GeneIDBlg00002