BlTCONS00159861 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00159861
Unique NameBlTCONS00159861
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at xpSc0039725:13081..16684+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00159861 ID=BlTCONS00159861|Name=BlTCONS00159861|organism=Branchiostoma lanceolatum|type=mRNA|length=3604bp|location=Sequence derived from alignment at xpSc0039725:13081..16684+ (Branchiostoma lanceolatum)
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGACGGCAAGAATGTGATA
AATGTGGATTTCTGAGTGAGGAAACACTTGTTTATAGATAAGTCAAAATC
ACAATTCTAAATAAATATCAAAGGAATTGAAGATAACGAATTGAGCAGGG
TCTGTTCCTCTCATGCAGAGAAGACTGAAAATAGTATAACTAGTCCGTTG
ATGAAGGTTAGAAATCCAGGTAATAAGATACGCCAAAAATCATTACTCAA
GCAACTGAAAAATTTGAAACAGTCAGACGTTTCAGACGACACCCGCTGTC
GTTCGTAAGTGCCCAAGGAAAGGTCTAGGAAACCAGGTCTTATACCAAAA
GTCTGAATAGATATGTTAATGTGGTTAAGACAATTTAGATGTCTTGACAT
AGTTTCAATAGAAGACTCAATACAAGTTTATATACTAATAGTTCAATTAG
TACATATGGCAACCTGTAGTATTGTTGTTTCTTTTGTCACTAATCAAGTC
GGTACTCTCCGGTTGCTATGCAACCATCATCTTTTTTATTAATTTTTATG
TCCTCAGTACATTTCAGTTACCTGGATTATCAGGCAACATTTCCTATCCG
CATTCGGGTCAGGAAGTCCCCACGCCTCTATGATCCTGGAAAAGGTTTTC
ATTTTAACTGTTATTCATCTTTACATAGTTATCTATGGTTTTACACCTTT
TATATATCATAATTATATAAGAGTACTCCAAAATGTGTGGTGTGTTTTAT
CAAAAATCGGACAAGTTTCCCTGAATCATATTAAAATGTTGGAGCCTTTT
TATCACAAAAATGTTAAGTCTAGTAAAAAGGTATGTTTTAGCATTTACCT
TGTATCTGAAGGATCAGTTACAGTCCCAGAATTAAATCCTATCTCGCTCC
GTCTGACTTCTTCCTTAGATAACGACATCAACAATAAGGTGACAATCATC
ACTAAGACATTTCTGAGGTATCCGTCCGTCAAGGCTCTCCTCAACAGTAT
CCGGATGTTCTACCCCAAAATCCGGATAGTAGTTGCAGACGACAGCCGCC
CTGTGAAAGACCTACAGGCGGAAAACATCGACCATTACGTCATGCCGTTT
GGAGCGGTAAGCAAGTCTGTTTACTTTGTGAACTTTCGACGACGTCTCAT
TTTTCAACATTTTCTTTTCACATCTTCCTTTTTACAGCATGAAAACTCAT
CTGTGTTGGTGGTTAAAACTTTATTCCAACTTAAAAAGAATTAGCCCATC
GAATTTGTGACTGTCCTACTGCAGTCTTCCTCTGACTTCCGATCCATCGG
TGACCAATCGACCAGATCACCTGACCTTACAGGCATGTGGCGTCAGCGAT
TGGTCATAATTACCGACAGGAAGTTTAAACCACCAGTCGTCTTTGTTGGG
TAAAGGTCGCTTACCCCCAGCAATATTTTTGTCTAAACAAAGCTATGTAC
TACATAGCTTACTTTAGTATAACTAGAAACGAAAAAGATCAGTATCATTT
TAAGCTATCAAAGCAAATACGCGACCACATTGCACTAATGGCTAACGAAA
AGGCGTCGCGCTTCATACCAAGACGGAGGTTCGACCGATTTGATTTTGAC
TTTAAGACTTTTCAACCACAACGGCAGTAATATGATCATCTTAACTAAAG
ATTTCCGTAAATACTTTCATCAGGTTGGTAGAACACAGCATATTGGGGAT
TCTTTTTTCACAACCAGTAAATATCACCTGTTGACGTTTCGGTGTCTGTC
AAACACCTTCCTCAGAGCTTCTGACTGGAGTACTGCTTCTCGCCGCTATA
AGCAGAAGTAGATGGCGCTTCAGCGACGAAAACACAATCCCAAACGTGGC
TACGGTTGTATCCCCCTCGTTCCGGTTTTTGACGATTACCGTGAGGAACC
GGGTTTACTGGTTGTGAAAAAAGAATCTCCAATATCCCTTTTAAGATTTG
TTTTGAAACATATTTACTTCTTGCAGGGTTGGTTCGGTGGCAGGAATCTA
GCCTTGTCACAGGTAACCACGCCCTACTTTCTGTGGGTGGACGACGACTA
TGTGTTTGTCAACGACACAAAGTTGGAGAAGTTTGTAGAGGTTCTTGACA
ACACTAATATGGATTTGGTAAGAACGCATCAAAATTGACCTTACTGTATA
ATGGGACTTAACTAGAACAGCCAGAATAAAAATATCAAATATAGATTACC
GTCAGCAAATATGGCTATAGGTGAAACATGCCATATAGAAAGGTAGGAAT
TTGAATAAGATTGAGTAGACCTTCTAGGTATTTTGCCTGTGTAGAAAATT
TTCTTAAGTCTGTATTTGGGTGATTTTTGTATGGAAATACATAACTTACT
TTCCAGAACCACGTGATACATTATTTCAGTTAACTCTTACATTTTCAGCA
TTCGGGGTTTTTAATCAGCACATACCTTTCACTTTGTTGGAGATACATGA
TAAATAAATAAACGAACACAAACGAATTAACAGAAACTACAGACACTCAT
CGAAGATTGCTTTCAGAAAATGTTTAATTGATTGTTTGCTTCAATAATTA
AAACATACTGTCAGACTTTTTCAAAAACTTATGTTAATAGTTCTACCCCT
TTTTCTCAATAATACAGGTATCTGGTAGGGTCGGTAACAGGATTCTCATG
TACTCCAAGATGTCGATCATACCAGGAGGCGAACAAGGCGACTGCCTGTT
TCAAGACCACGAGCACTTCGGTCGCGTTCCCGGCTACCCACACTTTTATC
TAACCCCGAAGGTCACCAACTTCTTCATGGGTAGAACGGACGAAGTCCGC
GCTGTGGGATTTGATCCAACCTACTCTCGCTTTGGACATACAAGTGAGGA
ATATGCTTTTAGAGGCTAACTAAACTAAAATACCTGACACAGAACGTCGC
GAGTAGTCCCTCCTTATTTTCCGTTCATAAATGTATTCTTTTGCAAATAT
TGGGCCCTTTGCCATGCTAATTTCTAGTTGATTTTAAGGACTAGTATGAT
CTCACTATTTTCCTTATTCTTGCCTCATCATCATCATATCGGGCAGCTTG
CCCGGACTAAGGTTGCTCTCTCCCTCCAGGCGTCACGGTCTGCCATTCTT
GCCTAACGATTGAAATTTTTCAACGTAGAGCATGAGATAGTTAACTGTGT
ATCTTTGTTGTTGAGCTTTTAATTCCGGTCTATAATAATGTTGATATTTG
GAAAAAAGGCCCGTGAAATTTGTGCATTTATAGTTATAGAAGTCTTAGAC
CTTATTAAAGTGCCTGGTTTTTAAAATCTGTCTTAAACAGATACTTTAGA
AAGAGACGCATGGACAGATTAGTGGAAACTAATGTATTATGTATTATGTA
GATGTGAGATATAAAGACAGTGTACTAACCATAATATTTTGTTCATGTTA
CAGCGTTCTTTGTGGATGCCATGGGAAGATTGCGAATGGCAGCGTGTGAG
GGAGTGCGTATAGACCACAAACGGGTTCAAACCAAGGAATACACTAAGTT
CCGCCAAGGAGGAGGCGTATCTGGGAACTACCGGAATGTGATCATGAGGC
GAACGTACTTTAAAGATAACATACACTGCTGGATTAGACCATAGACGATA
AGAT

Coding sequence (CDS) from alignment at xpSc0039725:13081..16684+

>BlTCONS00159861 ID=BlTCONS00159861|Name=BlTCONS00159861|organism=Branchiostoma lanceolatum|type=CDS|length=873bp|location=Sequence derived from alignment at xpSc0039725:13081..16684+ (Branchiostoma lanceolatum)
ATGCAACCATCATCTTTTTTATTAATTTTTATGTCCTCAGTACATTTCAG
TTACCTGGATTATCAGGCAACATTTCCTATCCGCATTCGGGTCAGGAAGT
CCCCACGCCTCTATGATCCTGGAAAAGATAACGACATCAACAATAAGGTG
ACAATCATCACTAAGACATTTCTGAGGTATCCGTCCGTCAAGGCTCTCCT
CAACAGTATCCGGATGTTCTACCCCAAAATCCGGATAGTAGTTGCAGACG
ACAGCCGCCCTGTGAAAGACCTACAGGCGGAAAACATCGACCATTACGTC
ATGCCGTTTGGAGCGGGTTGGTTCGGTGGCAGGAATCTAGCCTTGTCACA
GGTAACCACGCCCTACTTTCTGTGGGTGGACGACGACTATGTGTTTGTCA
ACGACACAAAGTTGGAGAAGTTTGTAGAGGTTCTTGACAACACTAATATG
GATTTGGTATCTGGTAGGGTCGGTAACAGGATTCTCATGTACTCCAAGAT
GTCGATCATACCAGGAGGCGAACAAGGCGACTGCCTGTTTCAAGACCACG
AGCACTTCGGTCGCGTTCCCGGCTACCCACACTTTTATCTAACCCCGAAG
GTCACCAACTTCTTCATGGGTAGAACGGACGAAGTCCGCGCTGTGGGATT
TGATCCAACCTACTCTCGCTTTGGACATACAACGTTCTTTGTGGATGCCA
TGGGAAGATTGCGAATGGCAGCGTGTGAGGGAGTGCGTATAGACCACAAA
CGGGTTCAAACCAAGGAATACACTAAGTTCCGCCAAGGAGGAGGCGTATC
TGGGAACTACCGGAATGTGATCATGAGGCGAACGTACTTTAAAGATAACA
TACACTGCTGGATTAGACCATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00159861BlTCONS00159861-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00159861-exon-xpSc0039725-1564993656:13081..13724BlTCONS00159861-exon-xpSc0039725-1564993656:13081..13724Branchiostoma lanceolatumexon
BlTCONS00159861-exon-xpSc0039725-1564993656:13999..14186BlTCONS00159861-exon-xpSc0039725-1564993656:13999..14186Branchiostoma lanceolatumexon
BlTCONS00159861-exon-xpSc0039725-1564993656:15057..15197BlTCONS00159861-exon-xpSc0039725-1564993656:15057..15197Branchiostoma lanceolatumexon
BlTCONS00159861-exon-xpSc0039725-1564993656:15698..15923BlTCONS00159861-exon-xpSc0039725-1564993656:15698..15923Branchiostoma lanceolatumexon
BlTCONS00159861-exon-xpSc0039725-1564993656:16484..16684BlTCONS00159861-exon-xpSc0039725-1564993656:16484..16684Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xpSc0039725genomexpSc0039725:13081..16684 +
Properties
Property NameValue
GeneIDBlCUFF085874