BlTCONS00114408 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00114408
Unique NameBlTCONS00114408
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000235:250567..258713+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00114408 ID=BlTCONS00114408|Name=BlTCONS00114408|organism=Branchiostoma lanceolatum|type=mRNA|length=8147bp|location=Sequence derived from alignment at Sc0000235:250567..258713+ (Branchiostoma lanceolatum)
AATGGACCCGACGGGAGCGAAACTTGTCAGCCTTACCGCTGTTCTTATAG
GCAAGCTTGTTTTTAACTTGCTTCCTCTAAAATGTATGTCTCGTCGGTCC
TCTGGCGGAGACTCTGAACACACCTCAAACGCGGGACACCACGGCCGGAC
GGTGACTTTCCTCAACTGTTTCGCGGGAGGCGTTTTTCTGGGGACGTGTT
TTTTGGGCCTCCTGCCCACCGTCAGGAAGAAGATGTCGTTGCTTCTGGAG
GCGCGGAACTTCAACCCTGACTACCCCGTGGCGGAGTGCGTGTCCGTCAT
GGGCCTGCTGTTGTCCATCCTGGTGGAACAGTTCGTGATGACGTGGCGCT
CGTACGGACAGTCCACGGTCTTTGAGCTCAGCTTTCATGGTACGCAACCT
TCCCTTACTTTGTTTGAAAACCTTGAACTCAAACGTTGAATGCAGCCAAT
GAGCAGATTTAGTTTTGAGTTAGTTTGTTATNTGTTCGAAAACCTTGAAC
TCAAATGTTGAATGCAGCCAATGAGCAGACTTCGTTTTGTATCAGTTTGA
TATAAGGGCTATAAAGCCTCAGTGTCCTGAGCCATTGAGCAATTGAGTTT
ATGTAGGATTATCATGTGACAAATTGGATAGCCATAGCCTGACTATTCTT
TATATGTGCCTTTTTAGATATCATACATCACGAGTGTAATATGGTTATGG
ATTGCACTACAAAGCTGTTTCTATGCGATGATTTTCTGGTGCAGTCATGA
ATAGTATTCACAAGAAAATAATTCGTTCGGGGTTCTTTTCAGGTCATAGT
CACTCTACAGAGGAAGAAGGTATCCTTGAAAAACCCCGGAACAAGTCACC
CTCGTCCCCACTGCAGATCCAGCGTCACAAGCCAGATGGCGACTCCTTCA
GTATCAGACCTTACGCGCTACTTCTGGGCTTGTCTGTCCATTCTGTGTTC
GAAGGGCTGGCTATAGGTCTTCAAGACAACGTAACTCTCGTTCTTAAGAT
CTTTGCTGGGATAGAAATTCACGAATGCCTCGTGGCGTTCGCCTTAGGAG
TGAATCTCGTCAAACACGGCATGGCAACGAAAACAATAATCAAAGTGGCC
ATCCTGTTTTCTTCCATGATTCCGCTCGGTATCGTTATAGGGATGGGCGT
TCAGAGTATCAAGAGCTTCGGTGGTGAAGTGTTGGGTGCAGTTCTCCAAG
GATTCGCTGGAGGGACCTTTTTGTACGTGACCTTCCTGGAGGTTCTAGGT
CAGGAATTCAACTCCAGAGACCGCAAGGTGGCGAAGGTCTTATTTGTAGC
GACGGGGTTTCTACTGATTTCAATTTTGACGTATTTCTTGAAGAATCATG
TCTGACTCCATTTACTTCCGTAAGAGGTGAAGCAGATGCCATAGTGAAAG
GGTGGACCACAACTCGCTCCCGGCACTGAAGGAAGTCACTGACCCATCAT
AGTAAAGACCAGCTAATCATTCTTCATGCCTTCTCTATTTACTTACATCA
GTATATGAAGCACTGAGTGCCTTTTCATGGTATATTGTATATAGCATTGT
TACTAAATTTGCCAATTAGTAGTGTGTGGATTTTAGACATATGTGCAGTG
CATACATATTTTCTGTCTGTAAACTTGCCTCTCTTTCAGCTGTTGTTGGG
AAGAGAACAATATCCGATGGGTATTCTTTAGATTATGCAAAGGTTTTGTT
CATTATATGGCTTTGATTTCGTGTCTGATTTTACTTTGAGGCTAGAATTT
GCTCAGTATACAATGTCAACTGAACGAACAAGCTTTTCACCACGTACTGG
TCTCTTTCTTTGTGTCATAGACATGTGCAATTTGAAACTTTATCATGTAT
TCCAAATTGCACTATTAAAATTTGAATTCAACAATGTTCCTTGTCGCAGA
CAGATTGTACAAATATGTATCAATAGATGATACAAATGCTTTTGTACTTT
TTTGTACCCAAAATGTTCCATCCAAATATATATGATCGCATAATATTCAC
AATGAAGTCAGACAATGAAAAAACAATAGACACACTGAGATTCAAATCAC
TATAAGTGTTTATTCATATACTTGACACAGAATGTTAGAAGGAACAGATG
GCGTAAGGTAAGGAGCCATACTGGAGATTACGTGACATTTTTTCCACCGT
GTAAAAATGTTCAAACAAGCTGCAACAGGCTTTTTCATTGGTCAGCCATG
CAGAAACAACACAACACTTACAAGTCGAGATAGAGGAGTTGAAATATATT
TCACCAATCACAACAACATGTATATTGTAGGGCCCTCAAAGTTAGGTACT
ACTTAGAACATTTTTTCATCATCCCTTCTCTCTTCATAAGTGCTCTTTTG
ATATAGGCTATCTATTCTCGCTAATCTGAGGAGATTTGGTATTATCAATA
GTATAATTATAGCTTCGTAAAGAATACAGTATATTACACCAGAGCTTAAA
AGTAGTTATTTGACTAATTCGACTTCCGGTGTCTATTGAATGCGACTTCA
AAATCGGTAATGTGTTGTGCTGAGACGACCATATTTTGAAAAAGATTGTG
AATTTAAAAAAAGGGTTTCCAAGCCTTTTGAAGTGGTAGTTTTCCTGTTT
CTGTGACAATTGAAAAATAGAAAACCGTCCTAATGTTTCTGCCAAACAGT
GCAAACTTTGTCTTGAATATGTAAATTAGGATGGATTACAGTAAAAAAAA
ACTTGCTGATACATACAACCGTCAAAAGTAGCAGAACATAATTTCCATGT
TATTGTTGCCAAACTGCGCCGCTTTTTACTCCATGTCTGGGAATCCAGGT
GAGCTGTTTGCTCACCCTTCATCTCCCGACACGTCATCAATATGGCGTCA
CATCTCGTAACGTCATCACTCTGCGTGCTTGTACAATCCTTAAACAAAAA
AACTGCAAGTTTATACGGAAGCAACATTTTTTACGCAAGAGTACCTGATT
TCACTGTGGCATGATTACGGGAAATCACAAGCAACATGTTGCAACAATTT
TTTCTCTTAACACACTTCAGCATACTGAATATCTACATATGGTAGACCTG
CAAAATAGATCTACTTGAGCAGAGTCGAAATAGCGCTGTGGTACATACAA
GTAACATTTGTCTTGCGTACGCTGTTTGTCTAGAGTGAGCCTTTCTAGAA
AAGTCAATATATTCATTGTTCCATATTGCACTACCGTGTTAACTTCACAT
GCCTTTGCTACATATATTATATTGTACTGGGATCACATGACATCGTGGGG
AGTGTTTCTGGTCAATCAGGATAGTTATCGAGGGAACGGGTACACTCGTT
AACTTGAGTAAAACTTTCGAAAACCATGTGTTGAACCATTCGTAAAATAT
AACCAGACTGTAATCAAGGGCCTAGAGTAAGTGTTTCTGGAAACAACTGT
TTGGTGGTGAAGAAGCTGGTATAAAGGACGATTAAAAAAAAATGTTTAAG
CCATTTCGAGGAAAAGTTGGTCAGGGAGGTGTTGAAGTTGGTTGGTTGTT
TTAGTGGATAGAAAGTAGTGGAAAATTGTACATCGAAAGCCGAGGATTGA
ATCGTTGCTTCTCTTGGCCATACGGCTAACTCCATAAAAACTGTCACCAC
ACAAATTGAGGTTGTCCTTTCCCATAACGGTCACAGCTATGGACGTTGGA
ATGGAAATGGTTTCGAGTTTCCTAAGTCCTTAATAAACAACAATGTCTTT
CCTTCCTTCAGAGGGAAAACTTCAACAATCTGCAGAACAAATTTCCCAAC
GCTGTAACTTCGGATCTGTACAAAAGTTCAAGTGAACTTCCCCACGATAG
GTCATGTGCGACATAGTGCAGAGTAGAAACTCATGTGATACAAACGCAAC
CCGAAAGGTCACAAGAACACCAAAATTATCAACTATTGGCACCCTGTTCA
TACATACCTATACATCATACATCTTCTATACCAATACCATTCTTTTTTTT
GCGATTGTACTGACATTCGATTGAATGTTTAGCACGATAAACGCCTCCTT
TGTTACATTCGCTTCAGACATGCCATTTTCAGTACGCGGATTTTGTGAGG
AACCCCTCGGCATGCACATTGGTCGTTCGGCTAAAGTCTGTACAAAACAC
TACTATACATATATAGTAGGGCCAACGGGAGCATTTCATGCTTTGCTTTG
TTACTGTTCTTCAACGATATACAACAAGGATGGACGGTACAAGAGTTTCA
GTCACGTTCAAGGTCAGAATGAACACACAGTTACGAGACTCGGCAATACC
TAGAGTGTATATGTCCCCTACTCTATTCACGGCACGGTTTAGGTTCCCTT
CGTTACAAGCTGAGCTTTCTTCCTTCCGGTAAGATTACTCGGACGTACGA
GGGAAATTGTTCCCAGGTACGTCCCTTTATAACAGACCCTTAACATTCTT
TCTACCAGTCTGGAGTAGTTTATGTCTTTACACTCATTCCCATCATATTT
AGTGCATCAATAAATACTCTGTGCAGCATTTGCCCTTTATCACACTATCT
TCAACCTATTGTGATAATAATTTCCTCATTTTTGTTCCATTTGGGTTAGT
CATAGTCATACCACGCTATCGTTACTAAATATTACCCGCCCCAGTCTAAC
ACACCTTACAGTCTACAACTCTTCCCTTCTAACCTATTTAAACTCTACAC
ACTGCAGATTAGACTGGGTACGGTGACTTACACAAAGCCAGAGGACAGCA
ATGACAATTTTTCACCATCTTCCATTCCTTTTGCCTGTCGTTAAACGATT
GTCTTGCGTTTCACGTAGCCCCTCGCGTGTCGAGCGGAACATCGGTGTGT
TGTCGTGAGAATACTTAGGTCAGTGCTCCTGAGGTGGACATCAACATTGT
ACACTCACTGTAGGACGGGAACGCTTCTCTACACATCAAGAGAGACAGAC
ACTGTACAGTTCTTCTTCTCTGGTACAACCATCTCTGATATCAACGAGTA
TCACATGTTTCGTACAATCTCTGAACTTCATCTGTATGTGGAACTCAAAT
TAGCATCACTACTTATTTCATTCTACAAAATCAAGTGAAATGCGTTTTTT
TCACAAGTAATAAGAAATGAGACGTCTCTCTGATGCCATGTTGGCCCTTG
GATTGAGAGGTCATTGTCATTTGACCACGACATAAAGTTGACAAAGTATA
TATTTCACACAGACGCAGTTCAGGGATGACACAGAATAAATCTGATCCCC
AACAAAACTGTAAACTTCTGTCGCTCTTCTCCGATTCTTTAAAAGTCTTG
TNTCACAACTGGTAAGATATGAGACGTCTCTCTGATGCCATGTTGGCCCT
TGGGTTGAGAGGTCATTGTCATTTGACCACGACATAAAGTTGACAAAGTA
TATATTTCACACAGACGCAGTTCAGGGATGACACAGAATAAATCTGATCC
CCAACAAAACTGTAAACTTCTGTCGCTCTTCTCCGATTCTTTAAAAGTCT
TGTTGCGTGCCGTGAGTTTCCGTGCGGTTGATGAGTTGTTCTTGTCCTGT
TGTCCTCTAGTTTTGGAAGTCAGCCGGCCTCATCTTGAGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGGACACACATAACGTCTAGG
AATGGACCCGACGGGAGCGAAACTTGTCAGCCTTACCGCTGTTCTTATAG
GCAAGCTTGTTTTTAACTTGCTTCCTCTAAAATGTATGTCTCGTCGGTCC
TCTGGCGGAGACTCTGAACACACCTCAAACGCGGGACACCACGGCCGGAC
GGTGACTTTCCTCAACTGTTTCGCGGGAGGCGTTTTTCTGGGGACGTGTT
TTTTGGGCCTCCTGCCCACCGTCAGGAAGAAGATGTCGTTGCTTCTGGAG
GCGCGGAACTTCAACCCTGACTACCCCGTGGCGGAGTGCGTGTCCGTCAT
GGGCCTGCTGTTGTCCATCCTGGTGGAACAGTTCGTGATGACGTGGCGCT
CGTACGGACAGTCCACGGTCTTTGAGCTCAGCTTTCATGGTACGCAACCT
TCCCTTACTTTGTTTGAAAACCTTGAACTCAAACGTTGAATGCAGCCAAT
GAGCAGATTTAGTTTTGAGTTAGTTTGTTATAAGGGCTTTAAAGCCTCAG
TGCCCTGAGCCATTGAGCAGAGTTTATGTAGGATTATCATGTGACAAATT
GGATAGCCATAGCCTGACTATTCTTTATATGTGCCTTTTTAGATATCATA
CATCACGAGTGTAATATGGTTATGGATTGCACTACAAAGCTGTTTTTATG
CGATGATTTTCTGGTGCAGTCATGAATAGTATTCACAAGAAAATAATTCG
TTCGGGTTCTTTTCAGGTCATAGTCACTCTACAGAGGAAGAAGGTATCCT
TGAAAAACCCCGGAACAAGTCACCCTCGTCCCCACTGCAGATCCAGCGTC
ACAAGCCAGATGGCGAGTCCTTCAGTATCAGACCTTACGCGCTACTTCTG
GGCTTGTCTGTCCATTCTGTGTTCGAAGGGCTGGCTATAGGTCTGCAAGA
CAACGTAACTCTCGTTCTTAAGATCTTTGCTGGGATAGAAATTCACGAAT
GCCTCGTGGCGTTCGCCTTAGGAGTGAATCTCGTCAAACACGGTATGGCA
ACGAAAACTATCATCAAAGTGGCGATCCTGTTTTCTTCCATGATTCCGCT
CGGTATCGTTATAGGGATGGGCGTTCAGAGTATCAAGAGCTTCGGTGGTG
AAGTGTTGGGTGCAGTTCTCCAAGGATTCGCTGGAGGGACCTTTTTGTAC
GTGACCTTCCTGGAGGTTCTAGGTCAGGAATTCAACTCCAGAGACCGCAA
GGTGGCGAAGGTCTTATTTGTAGCGACGGGGTTTCTACTGATTTCAATTT
TGACGTATTTCTTGAAGAATCATGTCTGACTCCATTTACTTCCGTAAGAG
GTGAAGCAGATGCCATAGTGAAAGGGTGGACCACAACTCGCTCCCGGCAC
TGAAGGAAGTCACTGACCCATCATAGTAAAGACCAGCTAATCATTCTTCA
TGCCTTCTCTATTTACTCACATCAGTGTATGAAGCACTGAGTGCCTTTTC
ATGGTATATTGTATATAGCATTGTTACTAAATTTGTCAATTAGTAGTGTG
TGGATTTTAGACATATGTGCAGTGCATACATATTTTCTGTCTGTAAATTT
GCCTCTCTTTCAGCTGTTGTTGGGAAGAGAACAATATCCGATGGGTATTC
TTTAGATTATGCAAAGGTTTTGTTCATTATATGGCTTTGATTTCGTG

Coding sequence (CDS) from alignment at Sc0000235:250567..258713+

>BlTCONS00114408 ID=BlTCONS00114408|Name=BlTCONS00114408|organism=Branchiostoma lanceolatum|type=CDS|length=951bp|location=Sequence derived from alignment at Sc0000235:250567..258713+ (Branchiostoma lanceolatum)
ATGGACCCGACGGGAGCGAAACTTGTCAGCCTTACCGCTGTTCTTATAGG
CAAGCTTGTTTTTAACTTGCTTCCTCTAAAATGTATGTCTCGTCGGTCCT
CTGGCGGAGACTCTGAACACACCTCAAACGCGGGACACCACGGCCGGACG
GTGACTTTCCTCAACTGTTTCGCGGGAGGCGTTTTTCTGGGGACGTGTTT
TTTGGGCCTCCTGCCCACCGTCAGGAAGAAGATGTCGTTGCTTCTGGAGG
CGCGGAACTTCAACCCTGACTACCCCGTGGCGGAGTGCGTGTCCGTCATG
GGCCTGCTGTTGTCCATCCTGGTGGAACAGTTCGTGATGACGTGGCGCTC
GTACGGACAGTCCACGGTCTTTGAGCTCAGCTTTCATGGTCATAGTCACT
CTACAGAGGAAGAAGGTATCCTTGAAAAACCCCGGAACAAGTCACCCTCG
TCCCCACTGCAGATCCAGCGTCACAAGCCAGATGGCGAGTCCTTCAGTAT
CAGACCTTACGCGCTACTTCTGGGCTTGTCTGTCCATTCTGTGTTCGAAG
GGCTGGCTATAGGTCTGCAAGACAACGTAACTCTCGTTCTTAAGATCTTT
GCTGGGATAGAAATTCACGAATGCCTCGTGGCGTTCGCCTTAGGAGTGAA
TCTCGTCAAACACGGTATGGCAACGAAAACTATCATCAAAGTGGCGATCC
TGTTTTCTTCCATGATTCCGCTCGGTATCGTTATAGGGATGGGCGTTCAG
AGTATCAAGAGCTTCGGTGGTGAAGTGTTGGGTGCAGTTCTCCAAGGATT
CGCTGGAGGGACCTTTTTGTACGTGACCTTCCTGGAGGTTCTAGGTCAGG
AATTCAACTCCAGAGACCGCAAGGTGGCGAAGGTCTTATTTGTAGCGACG
GGGTTTCTACTGATTTCAATTTTGACGTATTTCTTGAAGAATCATGTCTG
A
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00114408-exon-Sc0000235-1564993656:250567..250955BlTCONS00114408-exon-Sc0000235-1564993656:250567..250955Branchiostoma lanceolatumexon
BlTCONS00114408-exon-Sc0000235-1564993656:257783..258713BlTCONS00114408-exon-Sc0000235-1564993656:257783..258713Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00114408BlTCONS00114408-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000235genomeSc0000235:250567..258713 +
Properties
Property NameValue
GeneIDBlCUFF056119