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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000234:55856..65708+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00114232 ID=BlTCONS00114232|Name=BlTCONS00114232|organism=Branchiostoma lanceolatum|type=mRNA|length=9853bp|location=Sequence derived from alignment at Sc0000234:55856..65708+ (Branchiostoma lanceolatum)
GTGAAAGCGAGAGACGTCTCCTCGCTTGTTTCTGGCGACTTGTGGCTGTT
TTCTCGGCTTAAGACGCCTCCTTTTGAAGTCTTAAGACGATGGGTTTCTT
CGACACCCTGGCGAGATGGCTGGGGATGCGCAAGAAGGAAGTGAACGTGA
TCTGTGTGGGGTTAGACAACAGCGGGAAGACAACCATCATTAACAAACTC
AAACCTCAGAACGTGAGTTATTATATTTAAAGGAAACCCGAGCAATATTA
ATATATTAGGGCTCGAAAATCGGATTTTGAAAGTCAATTCATTTAGCTAT
TTCTATGTATGATTAGTTCAAACAACACTGTATAGCGACGTCCATCATGC
AAAAATATCACGTCGTTGTGATGTGAGAACTCACTGAAAATCGTCGCCGG
GGTTTTTGTAGACTCGCGAAACTACTATTACTAGTAAGGGAATCATCGTA
TGGCACGTTTTTGCGTGGTTTTGAAATGCTCAAAGTGTGAAGTTATTACG
CAAATGTGCTAAAGAGTAGTAAATGCCATAAAGATTTTTTTTTTATTTCC
AAATTTTGAGCCCTAATATTGCTTTGGTTGCCTTTAAAAATTAAAACGTT
TATGATTATATGTAACACTCATTTCTCTGCTTTTGTTTAGGGAAATGTTT
GATTTTGAAGTGTTCGACGAATGCATGCATGTAGTTTAATGATATAAACA
TGTTTTAATATTGTACTTTCGTTGCAAATAATAAATTCCACCCTCCCCAA
ATTTATGTATGTTACACTCACCTGTCACATATTACTATTTTGTAATATGA
ACTAGCGAGGAGGTTTTCATTCAAAAGTTGTATAGTTACAGATAACTTAT
TTTCAAAAGTGGAAATTGAATTGAACTGAAAAACATTTTTTTGCTAGCGT
TTTACTTATTTTTAGCAAGGAGGTTTTATATAAAACCTCCTTGAGACAAG
TTCCAAAATTTTTACCCTTTCCGAATTGAATGCATGACGACAGTAGCCGG
TGCGACTCTGGGAGGACGTATCAGCTTGTATATTTTGTATTATATCAGAC
CTGGGCCGCGAAAACGTTTGATACGGGTGTTCCGCAACGTGAGATCATTT
TCTTTTTCACACGGCTGGGTTCTAAGTTGTATCACACAGGCTTCCATAGA
ATATTTGGAATGCATTTTGAGTGAGCCAGTTGCGCCGCTGTCTAGAATTT
GAATGCTGGATTCAGAGGTTGGAATCGATGTTGTTACGACTTCTTTGGTC
GAGGACACATAACTCCCTCAACTTCAGGACATTTCGCATTCAAATGTGTG
TTTTTTCGGGTCGGTATGACATAAATGAAATACAACACGGTGTATTCCGT
ATCGTCCTTGGTGCGGCCCTCCTGCGGGTCGCATCGCCCTTCGACCGTCA
GGCGATCCTACCCACGGTCGGGCCTGTACCTCTGGCGATACAGAATACCC
TGTGTTGTATTCTATATTCATAGTCCTCCAAATATGATAAACAAACAAAT
ACGTCCTCCCAGAGTCACCATGGCTAGCAAGCCATGTGTATAACACGTAT
GTAGTGATTGCTGACAACATGCCAATATCTCATCATCATCAGTAATAATA
CCCCCAAATAACCCCACCAGGGGCAAAGAAAGGGGGGAGTTGAGGTCCCG
GGATAGGGCGGGCAGGCCTCCAGCCTAGCACAGAACGTCTCAACAGTGGG
AGCCGTCACAACCGTGCCAGGCAGGGCATTCCAATGCTATGTTAACTACA
TGTGAACGTAAAATGTTTTAAGGAATTCTAATTCTATGTCTTTTGCAGGC
CCAACAGAGCGACATAGTTCCGACCATCGGTTTTACAGTGGAGAAATTCG
CAGCAGCAAGGTACGACACTACTGCACATTTCAAAATTGTGGGATCATGT
GGCGGAATGGCAGCTTGTTTGGCCTAGAACCCAAGAGGCCCTGGGTTCGA
ATCCTGCAATGTGACCGATCTTGGGCCCTTGGGAAAGCCACTTTGCATCG
CTTTCCTCACTTCACTTATTAGGGGAAGATGAGTACCTAGCTTTGGTTAG
GGACATTCCTCAGATAGGACGTTCCTCGGATAGGATGTTGAATGGAGGGC
CTATGTTTCAGGGGAGACAGACCTCTATAGCATGTTAAAGAACCCACAAC
ACGTATCAAAAAGAGTAGGCTAGGGGTCCTTCCCAGTGTGAGTGGATCAA
ACCTTACAGTCGGTACATAGGCTACAGAATCTCTGAAGCAAGTTGAAGTT
GGTTGCCTCAAAAGAAAGAAGAATAATATCAATTCAATGTTAGGTCAAGG
GGTTATTGATATACAGATACAGAGATGTATTTGTCATGTCAATGACAAAA
TATTTTGCCCTGTTTCAGTGCTTGTTCCTCCATATCTGATCATTTAAATA
CATTTATGTATGTATCAATTATTAATCTTTGTCAGTTAATGTTATTAGTA
GGTAGTCCCCTTATAGTATACATGTATTATTAATTTTGATTGGTTAATGT
TGTTATAATAGGTAGTCCCCATAATCTGGCCACATAGAGTACTGAAGATT
GGAATCCATCAATGCAATGTATTACATATCTCTTTTAAGAATGTCATTTA
TATTATTACTCGGGGAAGGAGGATGACCTCCTGATGGTAGTATTGGAAAT
GGTTTTGTTTCCGCATTCGCAGCTAGAACTCACATTCCCGTCGTCGCATT
GGTGTGTAACTTGCTAGGTTGGACGTGGTGATGCACAATGTCTTTGTTAC
ACCGTAACTGCTTTTATACTTATAGTCAATCTATCATGATTGTAATTGCA
CCCCTATATTGACGCACAAGTGGAACTGCCCTCCCATAGAGACCATAGAG
ACGGTCCGCTGTCGCCCAATGTCATAAGCAGATATGGGGAAGATTCTTTC
GCTACTTGTTAACCTTAAGTTTTTTAACTGTGTTGTTTCAGCTTGTCCTT
TACAGTGTTTGACATGTCAGGGCAGGGCAGATACAGGAATCTATGGGAAC
ACTATTACAAGTGAGTATCCAGATAGTAGTCTTCTTTTTAAGTCGATTCT
CTCTGGATAGGAAATTTTATGTACATGTAAAATAAATGTAGTAATACCAG
TGTTGAGAAGTGGACGCCTAAACTAATGTCTTGCTTCCCCAGGGATGCCC
AGGCCATCATATTCGTCATTGACAGCAGCGACAAGTTGAGAATGGTGGTG
GCGAAAGATGAGTTGGAACAACTTCTCAACAACCAAGGTAAACAAACACA
CAAAAAAGCACCAGAACCGTCCCTTTGCTTATTGGGACGGACAGACTAGA
AAGTTCACCCTGTCCTTCCAAAAACTCTGAACTTGATATTTTTGTAAACT
TGGAATGACAGAAACAACAGAAATTTAATAACATTGGCTTTCAAATTCCA
ATTAATTGAATCAAATTTTGCCTTTTCCTTTACGGTGCCCCAATCATGTT
TAATGCCTTTCAACTGGCCTTGCATAGACAATTGCAAGCTATTTGAAAAA
GAGTAGGGGCATGCCCCGGTGTGCGATGGTCAAAAAACCTACAGTCGGCC
TCACATGGGTTCCCCCTTAGTAATAGCCTCCGGCTAGTTGGGCAACCCTG
GCATTTACATGCCAAACCAATAAATAAATAAATAAATTGCAAGCTACCCC
CCAAACTATGAGTGGGATAGACAAAACTTTAAAGCTGGAGACAGCCACGG
TCTCTTATCTAATTGAATCAGTGGTGTTCCTCAGAATTGTAAATAACCTG
TTTCAGCTACACAGTCTCCTCAAATATTTCTAGGAATAAAGCTTTGGGTA
GATTGAACTTCATGGTATAAGTTATAACCCATATTCTCGAATGATATAAT
AATAATAAGTCGTAGGTAAAATTATTTCCATCACTGATGAAAAGTGTCAG
GTGGACACTCGAAACGTTTGATAATTTCATACTGTAATCCAGTGGTAAAG
ATTGGATTTCAATTTTATTCTTCAGTTTCCTGGATGACTAATATTCACAA
ATGTAACCCATATTCTCATTCCAATACTGTAAATGCAGAAATGTTTGTGG
TGGTTTTATGTTTGCAGTTTTCGCGGCAACCGTTTCACCGCGAACTTAAA
ACCACTGCGAACATTTTTGTCCAGTGCTGTAACAGTATGTGACTATAGCC
CTGCTGCAGACTTAAAACCACTGCAAACACTTCATTTTCACCTTAGCGCG
AAATAAAAACCACCCGAACTTAAATACATTTACAGTAATGTGTCATATGT
TTGCATTCTGAAAAGTCAGTTTTTGTACTTTTTTATCCAATGAATTTCTC
CCAGATATCCTGAGCAAGCGGATCCCCATCCTATTCTATGCCAACAAGAT
GGACATGCAGGAATCCTTGTCAGCTGTTAAGGTCAGTCTTGTCCTGAAGG
GAAGGGCTTCTTAGAAAGGGTTTGGATGTCTTTAAGTTGGTTCATTTTTA
GAAGTAAGGCCACACCAATTTTTTTTGTTGCTTCTCGGAATAGCCTATCC
TGTTTTCCCATTTTGAAAAAAAAGGGTCGCTTTTCCCATTCACAAATTTT
TACTCATGATTTTACTATTTTTTCAGTTTTTAAACTCAATAGCCATCAAA
AAAAGGCCTGCACATACCTAAAAAGTGTGGTCAAATGTTATCATAAGTTT
TATTTATTTCTCAATATCAATCCATATATTACATGGCAAAGGGTATACGT
AATTTTGTCACTGAAATTATAGTAGTAGAAAGGGGACGGTGCATTGCAAA
AAACGAGCCATACAAAGCTGACACTTGAATAATCCTTTTATTCTTTATGT
TATTTCAATGCTTATCTTCACCCCAGACTATTTGCAAACAAATTTTTTTT
TTTTTTTGTCCTGTCGCTCCAATTTTTTTCTGAAAAAAATCTGAGAATCA
ACAAATGAAATTGGTGTGGCTTAAGGAAAGTGATCTTGCTCCAGTTTCAG
CTCACTGAAGAGCTATTCATCCACTTGTCAAAGAGAGGAGCCTTTATTTG
AATTCAAAGAAATAAGCAAAAATGATTAATTTTGTTTCACATCGGAATAC
TTGTTTTGCTGAAAATTGACACCTCCATTTTGTTTTTCAGGTTTCCCAGA
TGATGGGTCTTGAAGCCATCAAGGACAAACCATGGCACATATGGTATGTT
AGAAGCTTTTTCTACACATCAACAAATACAACTTTATGCAAGGCTAGTTA
TGTGAGATTTCATGCTACATTTTAGAATAAACAAATAGTTGTCATGTAAC
CTGCCACAGCCTAACAACTTATGACTTATATTATATCATAAAGCATCAAA
CATGTGAATTATTGATACTGCTCTGAAATGATTTGAGAAATAGGAAAAGC
ATCTAGCTCAGTGTGTCATACCAGGTCAAGTGGAAAGTGGTCACTCCTGC
TCAATGTCTTTTGCAATAGTTTGATGTTTGTGAAAATAAAGGAGTCTATT
TCTGAAATTATAAGGGTACAAGAAAATAGGGACATCCCTCAGGTAGGATG
TTAAATGGAGGTCCCGTGTTTGAGGAGAGCCATAGTATCATGAGCACGTG
AAAGAACCCACCACACTTATATCGAAAAGATTATGGTCCTTTCCAGTGTG
ACTGAATCAAATATATCTGTCCGGATATTCAGCTTGTACTCTTCAGTACA
CACCTGGTGTGTTACACATGTATGTCATGGGGCTGTTTATTGGGTATGAA
ATACAAACAAACAAACAGGCTTATAATGTAATGTTTCTAATGTTTTGCAC
ATTGTAAATTACATATTGTCAGACATGTTTGTTTCCCAATGCTTACAGTG
CCAGCAATGCGATATCAGGAGAAGGCCTTGATGAGGGGGTAGAGTGGGTC
ACAGGTCAGACATTACTACGTTTCATCCTGTAGATGAATTCAATTATATT
CCAGGAGTAGACAGACAGTCCTTTCTGTGCGCAAATAGGTCAAGATACTG
TAAATGCAGAAATGTTTGTGGTGGTTTTATGTTCACGGTTTTCGCATTGA
ACTCTTCACTGCAAACCTAAAAGCGTCAGGGAAAGCTGTTCCATAATGTG
ACTGTAGCGCTACTATTGTTTCAAACGTGATCTCAAAACCACCGCGAACA
CTCCATTTTCTCCCTTTCGCAAAATTAAATCTCTACAAACATTTCTGCAT
TTACAGTATTAGAGCATGTTTAGCTCTTAGAAACTGTAGTGTAAAGGGTA
GTTAACCTTGTTCCTGCTACCTAACTCTGTAACTGAGAATGGGGTGCCAA
ACGGCTACATGTACCTCAGTGTGCTACAGGTTTAACCTCAAATAGTGATA
TACATTTGTACTCATATACCTTGTAATTACTATGTTTAAAGCTCTGTATT
TATGGTAGTGTATATGAAGTTGTGGAAGACCTATTCTTTGGTTGTGTCAC
TTGTGTATCATTGGCAACATTGACAACTACCTGTATGTAATTTACTTTGA
ATTTGGAACTGACTAGCTTTTGATATAATTTATTCATGAGAGGAATGGGC
CCAATTTACACACACGTTTTTAAGTGACTGGAAGTCATTCAGTCGGCCAA
TGAGAGACCGCCTTTTAACATACCCACGGAATAATCAAACTCAACCTGAT
TGGTTGAAATAATCAAACTCAGCCAGCAGCTAAGAAAACTCAGAAAATGT
GTGTCTAAATCGGGCCATCTTTACCCCTTCTATCTTTAGAAATAAGACAT
ATTAACTATTCTTTACTTTTACTTGCAGATCAAATCCGATCCATGAAGAA
ATAGTAGCCTGTTTAGAAGACCGGAGGGGAGAATGGGGGTTGAATGTGTC
AAATTGCAATACATGTAAAATACCTTAATGTACTGAAATTGCACGATGTA
ATAATATGTCTGTAGCTGCACCCCCTGTTGTTTGGTTGTGGAACTGCACA
TTGTAGCAGACTGTACTTATTTTGTAAACAGGTAGTACTTTGTTAGGAGG
TGTGTTTTTTAAAGCTGCCATTTCATTTCTGGCAGAATGAGCAAGAAAGT
TACACAAACATTTCAACCAGGGGTCCCAAATAAACCACAATCATAATACA
TTATAGTTTATAAATTTGGATTGCTATGTAAAATAAATGGTAATTGATAA
GAACTTAGATATGCTACAGCATATTCAAAGCGAATACATCAAGATCTTGG
AAATTTCAAAAATTGATTTTGTTATGTGCTTTCCATGTCGACTTTGAGGT
TCTTAATGTATATCAAAATTATGTATATTTGCATATATATTGAAAGCTTT
ATGATTAAATTCAGACCAATGGAGGAAGTATGGACAAACCGAGCAATTTT
AGTTTAAAAGTTACTCTGAAGTGACAGATTTTTTTTTAACATTCCATTTA
TCCCAGTCTTCTCAGTCTGGTCTTCTCAGATTTATGTCAAATATTGAATA
TAAAATTCTCACCATCTTTGAACAAAAATATATTATATTGCCAATTGTTA
AAAGTTTAATGTTGTATCATAGTACATACTTCTGTAATCTACTTTGCTTA
GAAGACTTGTCCAGCCATAGAGTTAGAGAGGGTTGTTAAAATTGGAAGAT
CAAATAGAAACTGGCCAGAACGTCGCCGGAACGTAAACAGTTCGCGTATT
TAAGGTTAATATCTCGCATATAGGTTTATTTAGTTGTGTCCAAAGACATA
GTCTTATGCAACGGCTGTTACTCCGATGCAACGTTGACCCAAGAGAACAA
AAGAGATTCGGCAGTTGTAATAGGTTTAAATAGCAGGCTAATTGCCATAT
ACTCATTACGTTCCGGCGACGTGCTAAACTGGCCAAAATAGGGATACTTT
AGTCTCTACCAGACTGACTACGCCGGCTATAGGGTGAATATTTGCCAGGA
AAGTTTGGCCACCAGAGGGTTTCATTTGCAGGCGCAGTTCGAAGGGGAAA
TATTAACCTTCCCGTGAACTGACTCTCCTAGCCTGGAAACCATACCCTCT
GTGGCTCCCCGATATCTCTACGGCGTTGGGAGTGACCCCCGCCCGCCCAG
ACAGCTTAGCCTGCTCGGGTGTTGGTTTACGGCCTTGGATTAAATTAGCT
CGCCACCCATGGCGGCGAAAGTAGGATGGCAGCGAAAGTAGAAAGACAGG
CTATCAGAAACGGTTCAATAAAGCAGACTGGGCCCGGTCAACCCCTAAGC
CGACCCCCAGAGACTGGGACCAGGCTATGACTCTCCTGGACAATAAGTCC
CCTTTTTTGCCAAATTCTACGACCTGTACCCTTGTAGGAAGGCCTTTTGG
AGGCTAGGGATACTTGGTAGGGGGACTGAGGTTTCCTTGGACGACAATAT
TTATTCTACTGGCATTGGAAATGGTAACTCTATAGCCCGTTAACCCTTCT
GGCAAATGGGTTAGCCATTTTCTACTCTTTTAACAGCAGCCTACAAAGTC
TGGTAGAGACTAGGTTGTTACATATTGTTTGCTTTAACTTTTAGATTAGG
TTAGCTGTGAGGATATGGTGACAAGACTGTGACAGAGATATACATTGTAC
ATGTATGTCGCATACTTTTGATTTGTGATGTGGATATGTACTTGTGGATG
TTCAGTTTATCTTTATGATATTTTCCAGCCTCTTTAAAACCGGACCAACT
TGGAAGGCAACGTGTACATGATACACATGTATGTCCGAGTTCCTTTTCTC
TTGAGAAGACATTGTAGACCATATTGTATATTGGTAGTCCTTTGTTGTAA
GGCACTAGACATGTGCTTTAGGACCCCACCACACTTCTCAAGTCTCTTAT
GATATGGACAAATTGTATTACTCTCCAAGTAGAGGTTGGCGAACAAAATT
GTTACCTTCTTTTTAATGGGTGCCCATCCTGATTAAAGGAGTCAACTGTC
AGAAAACTGGTACTAGTCAGAAGAATGTACATTCAACCTCTGCTTGAGGA
GAAAAATGTCGTTCAGACATTTACATACAGAACGTGATGCTAGTTTACCA
GTTGATCGATGTATAGAATATGTAGTTCATACTTTTCAATGATAACACAT
GGCATAGCTTTGGCCTCATCTTTATGATGTAGGAGTAAAACAGTGTGGCC
TTTCTTGACATGGTTACAACACTGCAGTTCTGCCCTGCTCTGGTAGGGGG
CACTGTGAGCTCATGTTTGTTTCCACCAGTCACAAGCCCCTACGACCATT
GAGGTCATGAATCTGAACTGAACACAAGTTACCAAAAGCAAAGAATGTTA
TTCCAACAGTGAAATGACCATTATGTGTATAATTCGGACTTGAAAACTTT
GTTTTTCTTACATTCCGATGTCTTCTCAAAATACTCAAAGCTGTTCTGAA
ACAACATTTCAAGTAGGAAATTCTTTTATTTTAATAGGTGTCTCATACTA
TCTCAAGTCAAAAGTGGTCACTTCCGCTCCTTGTATTTTGCCGTAGTTTC
ATGTTTGTGTAAATAAAGAGATTTATTTCTGACAGTTTTGTAATATTACC
ATTTGTGGTCTTATCTCACAAGATATTGCAATACACGTCTTTGTATATAT
AACTGCAGCACACAATACAGTGTGTTTGTGTGTTTGTTTGTTTGTGGCTT
GCTGCCTCTCACATCAGACTTTCTACCTAGTAATTTTACCGCACTACTGG
ACAGATATGCGTCACAGACCCCGGGGTATTCTGTTACCATAGTGATGATC
AATCAGGGCATAATTACCGTACCTCAGGCCATTCTTTGCAACTTTTCATG
TCTTGACAAGACAAAAAACATCGAACACAACCACAGTGTTAGAACAACAA
CTTCAAATCAAGAATGACATAAATAGGTGTTCATCTGGCATCAACATGCC
AACAACAATAAACAAATCTGCAAAGAACCCTTATATGAAATTAAAGTGAC
TCC Coding sequence (CDS) from alignment at Sc0000234:55856..65708+ >BlTCONS00114232 ID=BlTCONS00114232|Name=BlTCONS00114232|organism=Branchiostoma lanceolatum|type=CDS|length=354bp|location=Sequence derived from alignment at Sc0000234:55856..65708+ (Branchiostoma lanceolatum)
ATGTCAGGGCAGGGCAGATACAGGAATCTATGGGAACACTATTACAAGGA
TGCCCAGGCCATCATATTCGTCATTGACAGCAGCGACAAGTTGAGAATGG
TGGTGGCGAAAGATGAGTTGGAACAACTTCTCAACAACCAAGATATCCTG
AGCAAGCGGATCCCCATCCTATTCTATGCCAACAAGATGGACATGCAGGA
ATCCTTGTCAGCTGTTAAGGTTTCCCAGATGATGGGTCTTGAAGCCATCA
AGGACAAACCATGGCACATATGTGCCAGCAATGCGATATCAGGAGAAGGC
CTTGATGAGGGGGTAGAGTGGGTCACAGATCAAATCCGATCCATGAAGAA
ATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00114232-exon-Sc0000234-1564993656:55856..56067 | BlTCONS00114232-exon-Sc0000234-1564993656:55856..56067 | Branchiostoma lanceolatum | exon |
| BlTCONS00114232-exon-Sc0000234-1564993656:58797..58865 | BlTCONS00114232-exon-Sc0000234-1564993656:58797..58865 | Branchiostoma lanceolatum | exon |
| BlTCONS00114232-exon-Sc0000234-1564993656:58998..59092 | BlTCONS00114232-exon-Sc0000234-1564993656:58998..59092 | Branchiostoma lanceolatum | exon |
| BlTCONS00114232-exon-Sc0000234-1564993656:60160..60236 | BlTCONS00114232-exon-Sc0000234-1564993656:60160..60236 | Branchiostoma lanceolatum | exon |
| BlTCONS00114232-exon-Sc0000234-1564993656:60946..60998 | BlTCONS00114232-exon-Sc0000234-1564993656:60946..60998 | Branchiostoma lanceolatum | exon |
| BlTCONS00114232-exon-Sc0000234-1564993656:61654..61709 | BlTCONS00114232-exon-Sc0000234-1564993656:61654..61709 | Branchiostoma lanceolatum | exon |
| BlTCONS00114232-exon-Sc0000234-1564993656:62584..65708 | BlTCONS00114232-exon-Sc0000234-1564993656:62584..65708 | Branchiostoma lanceolatum | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000234 | genome | Sc0000234:55856..65708 + |
Properties
| Property Name | Value |
|---|
| GeneID | BlCUFF056038 |
|
