BlTCONS00114086 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00114086
Unique NameBlTCONS00114086
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000233:58558..59881+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00114086 ID=BlTCONS00114086|Name=BlTCONS00114086|organism=Branchiostoma lanceolatum|type=mRNA|length=1324bp|location=Sequence derived from alignment at Sc0000233:58558..59881+ (Branchiostoma lanceolatum)
CAATTGGGTTCCCTGATGGCCAACCTCCACGCCACCTACCCCAGCTTTGT
GCGTTGCCTGATCCCCAACGAACTCAAGACTGGTGGTATCATCGACGGGC
CCCTGGTTTTCAACCAGCTGACTTGCAACGGTGTACTTGAGGGCATCCGT
ATCTGTCAGAAGGGATTCCCCAACAGGAGCATCTATGCCGATTTCTTCGA
CAGGTGTGACTTATGCATTTTATGATGGTTTAGAAAATGTGTTTTACTGC
AAATGGTAAATATATGATATTAGGAAAAGAATATAATTACTTAACAGACA
ATTGACAATTTCATATACATATATATACATACATACATCTCATCTACAGA
TACAAGGTCATGGCCGCTGACTTGTTTGATCCTAACGAATTCTTGGAGGG
TAAGGACGCTTGCCAAATGATCTTGAACCACATCAAGCTGGAAAAGGCTA
GGTATTCCTGTGGTCTCAACAAGGTGTTCTTCAAGGCTGGCACCCTGGCT
ATCCTTGAGGAGATCCGCGAGGAGAAAGTCAACGCAATTTATGTCAAAAT
GCAGGCTCGCGCTCTTGGCTTGAGCGCCCGTAAGAAGTTCAGGAAGATGT
ATGGTTCAAGGTGGGTGATCCACTTTTCCCTAATGACTTTATAGTCTTTC
ATATACTTATTGTGGCTGAATATCAACAATGACTCGTAACTGAAAAAATT
TTTGTAAAAGTATCCTATATATATCCTATGTTACATGGACGTTTGTCCAC
AATTACACTGTACTGCGACGTACAGGCTCGTTCAATGTGATGTTATCTGA
CCAATTGCAGAGCGGCCGTCGGTACACTGCAGCGCAACATCCGTGCGTGG
TTCAGGCTGCGCAACGACTGGTGGATCAAGATGTACCAGGGGCTGGGGCC
CAAGCTGACTGGAGGCATGGCAGAGGAACTGCTCAAGGAAACCAAGATCA
AACTCGCGGTAAACTTCGTGGTTCTCCACGGCACACTATTGAACAAGAAA
CTAATGCGTTCCACCAACCAATTCTCGATGAAAGTATCAATGGAGGTCAA
AGACCAGTGCAATGGCACCAGATAAAATTAAGCAGGAGAGACCTGTCACC
TGACTTGTCAACGGCTGATCACATTTTGCTCACTGTTCAAACTTAACCAA
AATGATTGCAATGAGAATTTTCAGTAAACCCGAACTATTACTCAGCGAAC
ACCGTTCTAAATCCTGGCCAAACGTCAGAGATTCAAGCATGAAGCCTCGA
GCAAAAAGTCAGATGTCTGATCTCATTCTGTGTCCAAGAAACTAATACTG
TCTGGTTTCTTTTAGGCAATGGAG

Coding sequence (CDS) from alignment at Sc0000233:58558..59881+

>BlTCONS00114086 ID=BlTCONS00114086|Name=BlTCONS00114086|organism=Branchiostoma lanceolatum|type=CDS|length=621bp|location=Sequence derived from alignment at Sc0000233:58558..59881+ (Branchiostoma lanceolatum)
CAATTGGGTTCCCTGATGGCCAACCTCCACGCCACCTACCCCAGCTTTGT
GCGTTGCCTGATCCCCAACGAACTCAAGACTGGTGGTATCATCGACGGGC
CCCTGGTTTTCAACCAGCTGACTTGCAACGGTGTACTTGAGGGCATCCGT
ATCTGTCAGAAGGGATTCCCCAACAGGAGCATCTATGCCGATTTCTTCGA
CAGATACAAGGTCATGGCCGCTGACTTGTTTGATCCTAACGAATTCTTGG
AGGGTAAGGACGCTTGCCAAATGATCTTGAACCACATCAAGCTGGAAAAG
GCTAGGTATTCCTGTGGTCTCAACAAGGTGTTCTTCAAGGCTGGCACCCT
GGCTATCCTTGAGGAGATCCGCGAGGAGAAAGTCAACGCAATTTATGTCA
AAATGCAGGCTCGCGCTCTTGGCTTGAGCGCCCGTAAGAAGTTCAGGAAG
ATGTATGGTTCAAGAGCGGCCGTCGGTACACTGCAGCGCAACATCCGTGC
GTGGTTCAGGCTGCGCAACGACTGGTGGATCAAGATGTACCAGGGGCTGG
GGCCCAAGCTGACTGGAGGCATGGCAGAGGAACTGCTCAAGGAAACCAAG
ATCAAACTCGCGGCAATGGAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00114086BlTCONS00114086-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00114086-exon-Sc0000233-1564993656:58558..58760BlTCONS00114086-exon-Sc0000233-1564993656:58558..58760Branchiostoma lanceolatumexon
BlTCONS00114086-exon-Sc0000233-1564993656:58907..59167BlTCONS00114086-exon-Sc0000233-1564993656:58907..59167Branchiostoma lanceolatumexon
BlTCONS00114086-exon-Sc0000233-1564993656:59368..59515BlTCONS00114086-exon-Sc0000233-1564993656:59368..59515Branchiostoma lanceolatumexon
BlTCONS00114086-exon-Sc0000233-1564993656:59873..59881BlTCONS00114086-exon-Sc0000233-1564993656:59873..59881Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000233genomeSc0000233:58558..59881 +
Properties
Property NameValue
GeneIDBlCUFF055961