BlTCONS00113970 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113970
Unique NameBlTCONS00113970
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000232:62785..65040+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113970 ID=BlTCONS00113970|Name=BlTCONS00113970|organism=Branchiostoma lanceolatum|type=mRNA|length=2256bp|location=Sequence derived from alignment at Sc0000232:62785..65040+ (Branchiostoma lanceolatum)
TTGTGCCTAGCTGTCAGAGTTTCTAAAATACCGTGTGACCCCTGTACAGA TTGAGTTATTCATGTTTATAGTGTGAGCTCATTCCGTCTGGAGTAACAAT TAGGGCAAATATATCTAATTGTCACGTCACCTTTGTTGGGTTGATGACGT CTTTATTCGAGAATAATGGAGGTTTGTGTTCGTGCACATTTGTCACGTCA GGTTTCCAACGGCAACGCCAGGAGTTGACCGCGGAGAGAGATCTGGCCCT AGCCCGCTTGCAGGAGGCGGTACAACGCGCTAGTCTGGCGGAGCAGCTCG CTTCGGACGCCGTCAGAGATCGCGAGGAGGTCATCGGAGAGAAGGAAAAG CTGACGAAGGAACGGGACTACGCCACGAGGTTGTACGAGAGTCTACGGCG GTCTGTGGACGTGGAAGACTCGGATTTTCCGTTGAGCATTCGGAAAACAG TCGACAGACAGGTACAGACATTGACGTTGGGTGACGATATTGCTTGGGTA CTTTATCATATATATATATTCCACATTAATCTTTTAGCGGATTATCCAGC AGTGAAAAAAACTCTCACCGTAACACGGATTTCTTAGCGTTTCACTAGTC GATCACATTACCGTATTTGGGGTCAAACGGACGTTTTGGGGGTCCTCACC CAAAATAGGGGGCCGGGGTGAAAAGGAGGGAAAATTCACTCTTTTTAACC CAGTTTTCACTCCTTGGGTCCAGGTAAAATGGGGTAAGGACCCCCAAACG TCCGTCTAACCCCAAATCCAGTTGGTAGTGTTCATAGCGTTAATAACGGT ATATAATGGTGCCTCCTTCGAGAATTTCTATTAGTCACCATCTTTTGTCT TCATGAAAAATTACATTTGGTGTCGACTTAGACCTTTGCATGCTGATTAG CGTTTTTTTCTAAGGGTTAGTGACATCACTATTGTTGACCAGTACTTGTA CAGGTGATTTTCTACCTTCTCCGTTATGCTGCGAACACGGTAGACTTCTA TGTTGCATAGTGCCCAGATATTGTATCAGTTCACTAATATCTTAGCGTTA ATTCCTACTTACACACTACTACCAGTGGACTACCCCCTGCTGTAGTTCTT GCACACCCGTGTGGCCTAAACGCTATAGTAACGGAGATGGGTGTCACTTA TAGAGGCTTTTCAATGACGTCATAATGATTATAATTTGCGTCATAATGAT TGGATAAGCCCACAGCGACCATGTTGGCGGGTAATCGGATTAACCTTGAG CACACTAGTAGCCGTTTGGCACCCAATCCCTTGTTGGTTACAAAGTTAGA CAGCAGGAAGAAGGTTGAGCAGCAGCATATTGACGTGTTTAGTAGACGTA CACACACACTGAAATCCAACATGTCGCAGATGTCGCCAATGAAAAGCCTG TTGAAGGCAACCAAAGCAATATTAGAGCCAACAAATAGAAATCAAAAATG CTGAAATCTCTATGGTTGTGACGTTTACTAGCATTGTTTAGCACATTCGC GTAAGGATTTCATATTTTGAGCCTTTAAAAACGCACAAAATCGTGTTGTA CGATGATCCTCTTAGTTTTGTGAGCCTGCAAAAAGTCCGGCCACGATTTT CAGTTCACATCACAACGACGTCATATTTTTGCAGAATTGACGTTGCTATA CATTGTGATAATGTTTTTTGAACTAATCATGTATAGAAAAGACTACATAA ACAGACTTTCAAAATTCAAACTTTTCGGGCCCTAATATTGCTTGGGTTTC CTTTGAGCATGGAAAGGATTTTAACCAACTTATAGCTTACTGTTTCTAAA TATAGATTAGTTACGAGAATATTCTTCGAACAGTGACTTAGAAAATGGTA GCGAAAATACGCACCTCCAAATTTTCGACGACTCCTGTCCGTCTTGTTCA CGGAGTGGCCTAGTCTCGCGAGAACACGAGACTAGGCCGAGACTTGTGAC GATCTTCTTGCCTCCCCCGCCTCCTTGCGGAGCAGGGGTAGATATAGATT ACTTTTTCTAAATATAGATTTCTGTTTCTAAATATAGAACACTGTTTCTA AATAAAGATCACTGTTTCTAAATATAGATCACTGTTTCTAAACCCAGGTT CAGACGTACCTGTCTCTAGCACACGGACAGGGCGGTGCCTTCAACATGAT GTTCGGCCAGGCCGCAGGGACTGACGGGATATCTGACGTCACCTCAGGAA ACCGTCGTGCCGCAAAAGTCGTCCAAAAGACGTCGTTCACGAACGGAAGA AGCATC

Coding sequence (CDS) from alignment at Sc0000232:62785..65040+

>BlTCONS00113970 ID=BlTCONS00113970|Name=BlTCONS00113970|organism=Branchiostoma lanceolatum|type=CDS|length=477bp|location=Sequence derived from alignment at Sc0000232:62785..65040+ (Branchiostoma lanceolatum)
ATGACGTCTTTATTCGAGAATAATGGAGGTTTGTGTTCGTGCACATTTGT
CACGTCAGGTTTCCAACGGCAACGCCAGGAGTTGACCGCGGAGAGAGATC
TGGCCCTAGCCCGCTTGCAGGAGGCGGTACAACGCGCTAGTCTGGCGGAG
CAGCTCGCTTCGGACGCCGTCAGAGATCGCGAGGAGGTCATCGGAGAGAA
GGAAAAGCTGACGAAGGAACGGGACTACGCCACGAGGTTGTACGAGAGTC
TACGGCGGTCTGTGGACGTGGAAGACTCGGATTTTCCGTTGAGCATTCGG
AAAACAGTCGACAGACAGGTTCAGACGTACCTGTCTCTAGCACACGGACA
GGGCGGTGCCTTCAACATGATGTTCGGCCAGGCCGCAGGGACTGACGGGA
TATCTGACGTCACCTCAGGAAACCGTCGTGCCGCAAAAGTCGTCCAAAAG
ACGTCGTTCACGAACGGAAGAAGCATC
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113970-exon-Sc0000232-1564993656:62785..63245BlTCONS00113970-exon-Sc0000232-1564993656:62785..63245Branchiostoma lanceolatumexon
BlTCONS00113970-exon-Sc0000232-1564993656:64882..65040BlTCONS00113970-exon-Sc0000232-1564993656:64882..65040Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113970BlTCONS00113970-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000232genomeSc0000232:62785..65040 +
Properties
Property NameValue
GeneIDBlCUFF055865