BlTCONS00113768 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113768
Unique NameBlTCONS00113768
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000230:195170..201704-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113768 ID=BlTCONS00113768|Name=BlTCONS00113768|organism=Branchiostoma lanceolatum|type=mRNA|length=6535bp|location=Sequence derived from alignment at Sc0000230:195170..201704- (Branchiostoma lanceolatum)
ATCACCTCACTCATACCTATCAACCAAGCACATATTGATTCAGACCATCT
TGAGAGTTCTTTGACCTTACATGGCTTCATTCTTGCATCATGCATGTCAC
GTCTGGTGTTTTACCATAACAGTAACAATCATGGAAGACTTTGAAATGGC
TCTTGAAAATATTTGAACAGACTTGTATATAGGATGGGGGATCTAATCTC
CAAGCAGATCTCCTGGTGGCAGAATCATTATATGGCCCACTGGACACTGT
TTTTCCTATATAACAATTCTGCCACTGGAAAATCTGAAGGAGAGAAAAAT
ATGCAAGGTCTGCACAGATGAGGGAGAGAGATGATTGGATAGCACGTATG
CAGTATGTGGTGAGCTAGAGCAAGATACACATTGGACAAGACGTGAATAC
CGGTTGTAACAAATTTAGTAATCCTATCTCTGCCTGGTAGAGTAAAAGTG
ACAGAAGCCCTACACTGGAACATAACCATGTTGTTTTCATTGCTCTTCTG
TTACAACTTACATGTACATACTGTGAAACTTGAAGAGCGATGTCACTCTC
AGTTCACTTGATGAAAATATGATGAGCCAAATCCACCAATAATTCTAACT
ATTGGTTTTGATATAGCGGTAGGGAGAAAACAAAGTGTTCGCTGTGGTTT
TTAGTTCGCGTTTGAGACAATAGCAGACCAGGGCGTAGGGGGGCAAAAAA
TATCACGGTGGTTTAAAAAATTAAAGTTTGTGGCGAAAAGCTCACTGCGA
AAACCACAGACATAAAACCACTGCAAACACTTCTGCATTTACAGTACTTC
CATACACTAGCAATAATGGGTTCTATCAGATGGGACTTAAAATGATAAGT
AAGTCCACAAGTTGCAGTGTACCATGTTCAGTAGCTCTATTCTTTTGCTT
TTACATAACATGGCTTCATTTGGGAAACTGGTGCTTGAAAAGATTGAAAA
ATTTGTTTCTTGCTTTTCGCAGTTTTCTGATGGTTGCAACCATGACGACT
TCTCGGCCTGACGTCAGTCTATTGAACAATGAGGCAGCTAACGTTACCTT
TCCTGTCACAACGGTGGGCTCATTGGGTACAGATAGGAAGATAACATTTG
GAGACCAGCAACAAGCACCCATCACACCACAAACAGCTCCCCCTGCTGCA
GCAGTAGAGCCCAAGCAAACTGCAGGCGATGCTCCAGTCAATTTGGATGG
AGACAAGCGTGCAGTGTACAGGTCAGTATTTCCTTGCATACAAAGTCATG
TTTCGTAACAGTTTGTGCCACACTTTTTAAAAGTATTCCTCTTTTTTTTA
TATCATTACCCAGTATACCCACCCAAAACATTTCCCAATTGGCAAAACAT
TGTGGGATAGTTTGAAATCTGATGAAAAGGATGTATTTCAGGTGTCTTAA
GTTGATTTTGTTAAGGTGGCTTCCCTCTCTGTTGTAGGCATCCTCTCTTC
CCCTTGCTGGCTTTGCTGTTTGAGAAATGTGAGCAGGCAACCCAGACAAC
AGAGTGTCCATCTTCTGCAAGTTTTGATGTGGATATTGAGGCCTTTGTTC
GACACCAAGAAGCAGACAGGAAGCCATTCTTCAGTGATGACCCAGAGTTG
GACAGTCTGGTCGGTTAACACATTTTGTATTCTTGTCTACACCCTTGTAT
CTAAAAAAGTGGATGTCTGGTTCAGGCATTTTCTATTGATACTGAACTGT
ATCTGTATGTAAGGCAGATATTTGTTTGATGTAGTTAGAAATATCTGCAT
ATACTTGTAGCATGAGTAAACAAGATATCAATATGATGAGTAGGAACCAG
ATCAGCATTTGTAAACACTTGAAATTCAGTTGTGCATGCCCATGGAAGTT
GTAGTTAATTAAGTGTACATGTATTTCCATCCCTGACTCCATGCAGATGG
TGAAGGCCATCCAGGTGTTGAGAATCCACCTGTTGGAGCTGGAGAAGGTG
AACGAGCTGTGTAAGGACTTCTGTAACCGCTACATCACCTGTCTGAAGGG
GAAGATGCAGAGTGAAAACCTATTGAGGACAGACCTGGCATCCTTTCCAG
GCGCACAACAGCCTCAGGTGCAGCCGCAAACACAAGTACACACGCAACAG
GTGATACACAGTCACAGTCGACAGGGCATTTACTAAGTGGTACAGTGCTC
CAAAACCCTTCATCAAATGGTACTTTTGAATGAAGTTCATGATAGATATG
GATAGCTTGATGATATTATACAGATTTCCTGGTAATCAGTAGATAAAAAA
GCAAAACCCTTAGATATATGGTGCACGCAAGCAAATACAAACTTTGTAGA
TACATTCTTTGTACTAATAACTGATTCTGTCATGTCAATGTTTTTGTAGG
ATGGCCAGATGACAGTGCAGCCACAGGTTCTGGTCACAGCCGTGACAAAC
GGCTCCACCTTGAACACTGGGATGGTACTGCAGACTGGCATGGCACAGGG
TGGGCAGACTGTCAGCCTGGCTGCAGTCAACCAAGGTGCCATGGTTGTGG
CAGGTGAGATGTGTGGATTGTAATAATGGCGGATGAAATGTTTTTCTTTG
TATTAATTATCTTCCTTAGTAGGTACCATGTGATTTTATAGGAAGAGAAT
TGTGTAAGTGCTAACTTTTCGCTCCAAAATTTTATTTCAGGATTAATATT
TAAGGTTCACTGTCATTGAGTATCGCTGTAAAGTGGTCAGTAGAAGGCGT
CACAGGCCATTATATGATCTAATAAATCAACCTCTATGAACTTCATTTCA
GAGTGTACTATTGAGTTAGAAAGCTCCAAAACAGTTTGCAATGCTGTTTT
TTCTTGAATTATTGAACGGCTTTATTCACTTTTTTAAGATGGCACGCTGT
ACCAGCCTGTGACTATGGTGGCATCCCCAGCTGTTGTTGCACATGGTGTA
CAACAGTCCTTACCGGCAACTGTACAGCTGCAGCCGGTAGCCCAGGCTGT
TCAACAACAGCCACAGGTGATAGCCACCAGCACAGCACACATCATCTCTG
GCAGCACCCCGCTGTCACAGGTAACAACAGCACTGCAGATGTGCATGTTT
GTTCTTGTTGTGATAGCATTGTATGGGCATGTCAAGAGAATGATGTGATT
TGATTATTGTATATATTTTCTGCATGTAAAAAATCATTTACATTGATTTA
CAATTTTAGGAGTATCTGTCTGATATTCTATGGGGTCATTGTAAAAGAGT
AACCTTTAGTACCTGCAAAGTAGGATACTTTGTTTCAATTTGTCTTTAAC
NAATTTGTTTTAAACATACCTGATTTGCTGTCCACAATCCTTTACATCAT
TATGGTCAAATATTCTAGTCCGGTTTCAGACTGTTTTTAACTGAGAAATC
TAGTTTGAGAACTTATATTTCAATGAAATTGTTGACATGTTTGCACTATG
ACCACAGATAGGTGTGCAGGCTCAACAAGGTATCCCACAGCAGCTGGCCT
GCCCCCCCACCCCTACTGCCACCAATCCTGTGGCATCAGCACAGAGTCCC
CAGGACTCCCCTGGCTCAGAGGACGACTTGAAAAGGCGAAACGGGAAGCG
GGGCATCCTCCCAAAGCAGGCGACAGACGTCATGAGGTCCTGGTTATTTC
AGCATATCGTGGTAAGATGATTCTTGCTCATCTAAGCCAGAACTTTGCTA
AATTTTTCAATTACCAGATGTAATTGCAGCTAACTTACAAACTTTGTATG
CATACTAGTGCATGAGAGGGAGTTAGCATCTTTGCTGTTGTGCTTATGTT
CACAGAATATAGCTGTAAGGAGACTATAAACAAATCAATGTAGTATCTAG
GCAACTGAATTGTAGCAACTGGAATGTAGCACAGTAATTGACAATGTTTT
GTATTTCCTCTTTCTGGACTGCCTTATGTGGTTGTTCATGATAACTCATA
TGGGACAATGATAGCAGTGATATAATTTTAGTATTTGTTTCCCATTTACA
GCACCCATATCCCACAGAGGATGAAAAGCGAGCAATTGCCAACCAGACCA
ACCTGACACTTTTACAAGTCAATAACTGGTTAGTTCCTACTATTCCGGCT
TGATGGTGTATATAATCATAACTTGTAACAATTTAACTGGTTCATGTTTT
ATTGAAACTAGATATGTCATCGTCCAATGAACAGGTTGAAAGTTCTTATT
AAGTTATGTACAATCTCATACCTCTGTGATTAATAACTAATACACTTACA
GCAATTCAGTTATTCTTGCCAATCTATAGTCCAAGCTAACAGCAGTGTTT
TGACAGGTTCATAAATGCCCGTAGAAGAATACTGCAGCCCATGCTTGATG
CAACAAATCCAGACCTTTTGCCCAAAGCTAAGAAGGCCAAACCCCAGCAC
CGTCCTACCCAGAGGTTCTGGCCGGACTCCCTCATCACGTCCATCCCTCA
ACAGCAAGATCAACAGTTACCCACAGGGGAACAAACACCAGGTAGGTTCA
TCTCCTTGATAACCTGTTTCAAATATTGTCAGTAATGTTGTCCACCATTC
CCTCAGTCTATGTTTGACAGTTTATTGAGTGGAGAATTCTTTGTTTATGA
GGTGAGGAATTGGGTATACTTGTGAAACAGAGTATTCTGTGTACCTTCCA
GGTGACCTGTTGGATGCAGTGAGTACAGAGGCAGAACAAGTGGATGGTCT
ACAGAACAACCACTCTGTCACAACTTCAACTGTCGCAGAACAGAGCAATG
TCCTCTCTCAGGTAAGCCACAAATCTGATACTTTACACAACCCTATNACT
TTACACAACTCTATACACCGTTTGGCTTCAGGTTGAAAGATGCAGCAGTA
CACACATCAGCAAATTTTTCTTCACACCCTTCTCTTTTTCATAATCTGTC
ACCATAAGAGTGTTGCTTGTTTGTCTCTGTCCTCTATCTGTTTGTATGTT
TGTGTTTGTATTATAACTTTTGGACCGTACTGATGATAAACAGGTTTAGT
AGTTATCCCTTGGGTAAACATTTCTGGTATCGATAACTTTCCCATTCTGA
AGGTCTCTATTCCTCTGCTTGTTTACTGTAGATGCTGATAGGTCATAGGT
CATCATCTCCATCCCTACAAGACATGGCGTCTAACGGGGAGGAGACTTTG
TTGGAAAGGGAGTCTGGGTCCGATGGTCTGCCCTCGGGAGGCTTGAGTAG
TCTGGACGTGGATAATGCCACTGCTCCAGAGCTATCGAACTAACAAACTT
TTCTTATGTACAGCCATGTGTAAATAAATATTAGTGTATCTAAAGATATT
TACTGATACATGTAGTGGAAAGTCCTGGTAACAATTTATAAACCATTAAC
ACTTCAAGACACCTCTGCTGTCTCATTTTGCCTACAGACCTGTGACCTCC
TGTCTTTATGCTCCATGTTGATCTTTTCTTTTTGTCTATTGAAATTCTTG
TCTCTACTTCCACTGAATTATATGACTGTTCTGTCAAAAAGTTTTGCAGC
AGTGTATTGAGAAAGGGCATTAATGTTGCCCTGCCCTTGTCTGCATTACT
GTTACTAGTGTTAGTAGAGTATCTCAGGAATGACACATGTAGGTTCTCGT
CATTTAAACTGCTGAAGGTAGTTGGTATGGAGCTTATACTCCAGTCAGTG
TGATGTAATGAATGATCGGACATTGAACCACTTTTGCCAAGTACATGTAG
TACATACATGTATATGATTTGCACTTTGCCAAACTTTTGATACAAATTTC
AGTGTTCGTCCATAATAGGAACTATCTTTTGTAAGTTTATAATGTATAAC
GCACACTTAGCAATAACAGAATCATTCGACAAGCAATTTAAATTCATGTC
AGAAGTAATGATAGAATTATAGATGTTGGTAAATTGGAAGTTGAAAATGA
AAAAAAAAATTAAGTACCAATAGAAACATTCGTTATTTTGGACCTTTTTG
TGTAGGATGTCTACTAAGGTATAAAAATGTTGCAAGGTAAGAAATGCTGA
TTTCAGTATTGTTGCTGAGGCATTTATGCATACATGCTTTTTTGCATGAC
CTGTATTCTGAGAATATGTTGGATAAGCATGTTGTTACATACAGATAGAG
GTCACAGGTCATTGAAGTAAGATTGTGAAGAGACAAATGTCTCTAACAAT
ACTGTGTCCAACAATGTGAAGCATGCAATGCTCCCCTCAAGTGAAAAAAG
TATGATTTGAGACAACAATTTTGATATGAAGGTGAACATTTGTAGAGCCA
TGACAGTGTATTCCATTATGTTGTTATTTAGTTGCGTTATTATTAAGTTT
TATGTACTGTTTTGTTAGGTTTACCTTCAGTTAAGAAAATGCCATATTAC
TAAATCTGCCAACCACGCTTGTACAGCTCTAACAAAAAGCAGTGAAACTC
TCATAAAATGAGTGTACAATGTATATGTATTATTGTTATCATTGAATTTT
AGGTAGGTTTTGACAAAAAAGTATAACATTATATGTAACATAATAACTGA
TACAACTAGGCTATATTCTGGCCACTGTAATAAAGTATAATGTTTTTTTT
GTTGAGAATAAAAAAAAAAATATTTCATACAAAAC

Coding sequence (CDS) from alignment at Sc0000230:195170..201704-

>BlTCONS00113768 ID=BlTCONS00113768|Name=BlTCONS00113768|organism=Branchiostoma lanceolatum|type=CDS|length=1704bp|location=Sequence derived from alignment at Sc0000230:195170..201704- (Branchiostoma lanceolatum)
ATGTGTTTTCTGATGGTTGCAACCATGACGACTTCTCGGCCTGACGTCAG
TCTATTGAACAATGAGGCAGCTAACGTTACCTTTCCTGTCACAACGGTGG
GCTCATTGGGTACAGATAGGAAGATAACATTTGGAGACCAGCAACAAGCA
CCCATCACACCACAAACAGCTCCCCCTGCTGCAGCAGTAGAGCCCAAGCA
AACTGCAGGCGATGCTCCAGTCAATTTGGATGGAGACAAGCGTGCAGTGT
ACAGGCATCCTCTCTTCCCCTTGCTGGCTTTGCTGTTTGAGAAATGTGAG
CAGGCAACCCAGACAACAGAGTGTCCATCTTCTGCAAGTTTTGATGTGGA
TATTGAGGCCTTTGTTCGACACCAAGAAGCAGACAGGAAGCCATTCTTCA
GTGATGACCCAGAGTTGGACAGTCTGATGGTGAAGGCCATCCAGGTGTTG
AGAATCCACCTGTTGGAGCTGGAGAAGGTGAACGAGCTGTGTAAGGACTT
CTGTAACCGCTACATCACCTGTCTGAAGGGGAAGATGCAGAGTGAAAACC
TATTGAGGACAGACCTGGCATCCTTTCCAGGCGCACAACAGCCTCAGGTG
CAGCCGCAAACACAAGTACACACGCAACAGGATGGCCAGATGACAGTGCA
GCCACAGGTTCTGGTCACAGCCGTGACAAACGGCTCCACCTTGAACACTG
GGATGGTACTGCAGACTGGCATGGCACAGGGTGGGCAGACTGTCAGCCTG
GCTGCAGTCAACCAAGGTGCCATGGTTGTGGCAGATGGCACGCTGTACCA
GCCTGTGACTATGGTGGCATCCCCAGCTGTTGTTGCACATGGTGTACAAC
AGTCCTTACCGGCAACTGTACAGCTGCAGCCGGTAGCCCAGGCTGTTCAA
CAACAGCCACAGGTGATAGCCACCAGCACAGCACACATCATCTCTGGCAG
CACCCCGCTGTCACAGATAGGTGTGCAGGCTCAACAAGGTATCCCACAGC
AGCTGGCCTGCCCCCCCACCCCTACTGCCACCAATCCTGTGGCATCAGCA
CAGAGTCCCCAGGACTCCCCTGGCTCAGAGGACGACTTGAAAAGGCGAAA
CGGGAAGCGGGGCATCCTCCCAAAGCAGGCGACAGACGTCATGAGGTCCT
GGTTATTTCAGCATATCGTGCACCCATATCCCACAGAGGATGAAAAGCGA
GCAATTGCCAACCAGACCAACCTGACACTTTTACAAGTCAATAACTGGTT
CATAAATGCCCGTAGAAGAATACTGCAGCCCATGCTTGATGCAACAAATC
CAGACCTTTTGCCCAAAGCTAAGAAGGCCAAACCCCAGCACCGTCCTACC
CAGAGGTTCTGGCCGGACTCCCTCATCACGTCCATCCCTCAACAGCAAGA
TCAACAGTTACCCACAGGGGAACAAACACCAGGTGACCTGTTGGATGCAG
TGAGTACAGAGGCAGAACAAGTGGATGGTCTACAGAACAACCACTCTGTC
ACAACTTCAACTGTCGCAGAACAGAGCAATGTCCTCTCTCAGATGCTGAT
AGGTCATAGGTCATCATCTCCATCCCTACAAGACATGGCGTCTAACGGGG
AGGAGACTTTGTTGGAAAGGGAGTCTGGGTCCGATGGTCTGCCCTCGGGA
GGCTTGAGTAGTCTGGACGTGGATAATGCCACTGCTCCAGAGCTATCGAA
CTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113768-exon-Sc0000230-1564993656:201346..201704BlTCONS00113768-exon-Sc0000230-1564993656:201346..201704Branchiostoma lanceolatumexon
BlTCONS00113768-exon-Sc0000230-1564993656:200484..200732BlTCONS00113768-exon-Sc0000230-1564993656:200484..200732Branchiostoma lanceolatumexon
BlTCONS00113768-exon-Sc0000230-1564993656:200096..200267BlTCONS00113768-exon-Sc0000230-1564993656:200096..200267Branchiostoma lanceolatumexon
BlTCONS00113768-exon-Sc0000230-1564993656:199605..199808BlTCONS00113768-exon-Sc0000230-1564993656:199605..199808Branchiostoma lanceolatumexon
BlTCONS00113768-exon-Sc0000230-1564993656:199202..199355BlTCONS00113768-exon-Sc0000230-1564993656:199202..199355Branchiostoma lanceolatumexon
BlTCONS00113768-exon-Sc0000230-1564993656:198685..198866BlTCONS00113768-exon-Sc0000230-1564993656:198685..198866Branchiostoma lanceolatumexon
BlTCONS00113768-exon-Sc0000230-1564993656:198094..198297BlTCONS00113768-exon-Sc0000230-1564993656:198094..198297Branchiostoma lanceolatumexon
BlTCONS00113768-exon-Sc0000230-1564993656:197677..197753BlTCONS00113768-exon-Sc0000230-1564993656:197677..197753Branchiostoma lanceolatumexon
BlTCONS00113768-exon-Sc0000230-1564993656:197264..197448BlTCONS00113768-exon-Sc0000230-1564993656:197264..197448Branchiostoma lanceolatumexon
BlTCONS00113768-exon-Sc0000230-1564993656:196994..197103BlTCONS00113768-exon-Sc0000230-1564993656:196994..197103Branchiostoma lanceolatumexon
BlTCONS00113768-exon-Sc0000230-1564993656:195170..196673BlTCONS00113768-exon-Sc0000230-1564993656:195170..196673Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113768BlTCONS00113768-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000230genomeSc0000230:195170..201704 -
Properties
Property NameValue
GeneIDBlCUFF055775