BlTCONS00113738 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113738
Unique NameBlTCONS00113738
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000230:38743..47442-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113738 ID=BlTCONS00113738|Name=BlTCONS00113738|organism=Branchiostoma lanceolatum|type=mRNA|length=8700bp|location=Sequence derived from alignment at Sc0000230:38743..47442- (Branchiostoma lanceolatum)
AAGTGTGAAAAGTTTTCATTACCAACGTACCAGTGTTGACAAGTAAGAAG
TAATTCCGAGTATTTGATTTTACAGATGACTAGATTTTGCTCTTTGGCTG
ATAGCAACAATATGGTTGTTATGTGAGATTAGCACTACTTAATTCTTAAT
CATATTTTTATAGTACATAGTCATTAATATCTGTGTCACAGATAAAGTGA
TGTGAAGTGTGATGGAGTGATCGAGGATCAGGTGAAGTAAGACAACTGTG
CATTTACGAATTATGGGTAAACCACGATTCTGTGTGAAGATATCACAATA
CAGCACAATCGCTTTTTGATTTATCAACTCACTCTTTTGAAAGTGTCCAA
CGAACAATAGTCATGTTGACTTTCCCCCGCGGGCACGTAGCTATAGGTAC
AGTAATTGTTCTCGGGAGGTCAAAGGCCATCTTCAGGGAGTGTCCGTTTA
CCATGTTTACGTGGCTGTACTCACATCTGGCACAACGACGTCACAAGGAA
GTAAAGTCTTCGTCGAAAATGCGTTTCTCTTCCGAGAAAAGGTGGGCAAA
GGTACATAAACATGAGTTCAGTGAATATAAAGGAGTTGAGAAGCTGGTCG
GGAGCTCGAGCGCCTGTCGACAACATACATGACATACGTGTAAAGGCTAG
GGTTTGCCCAGGAACGCACAGTGTTGGTGAGTTCCTACCACAGTGTGGAA
ACCTGTTCTCACACAGCACGACCAGCGGATATCGGCGGACTACATTCACA
AGGTTAGACTTGTGTGAACGAATTCGGGACACATTTACAGAATACGCACG
CCCTTTATTTTAAGTTTTATAGGAATATATTTCATGGCTTATTTTATTTT
CCGGCCACCTATTGTGTGTGTACTAATGCCACGGTCGCAAACGTCGTAGG
TCACCGAACGATTGTGTCAAGGGAGGGTTCGTGGGTCAGCCGCACGATAA
TCGCAGGTGAAATAAGCTATCGCTGAGCGTCGTGCGTGATCTTCTTCCAT
CGTCGTACGATTTCTCTAGACACATTCATGCTGTACAGTGTACATCTTTT
AGTTTTATCTGTCGGGCCCTAGGAGCTACTGTTATGTTCCAGTATCCCAG
CTGGCCTGCTATTTGCTATTTTTCTTGGTGGGGACTTTCTGGGGGCCATC
ACAAGCAAAATATCCCAGCTCTTGGCAAACTGACCACAGAGACAGTGATG
AGGTCTGATCTAGTTGTGTACCTACGACATTCCTACGTGGATATAGCCGT
GTAACAATTGTATGCATCACATGCACGTGATTCTGGATCTGACAACGGGC
GAGCTGTTCTCTGGTTGCTACTGTGTTCTCAAAATGGCTACATTTTTCAA
CTGTCAATATCAAGGAAAATCAAAATCGCCAGAACGCGGTCTAATTTGTC
ACCTCATAAAGAAAAAGAAGGCAATCACTGTGTATCCTGCCATGGGCGCT
GCCATGGGGGCTACAAAAGTTGAACGACGATGACAACATTTTGAACATAT
TCAAAACCCCTTTCCAGCCGGCACGCCATGGGCTTCACAGAACACGAATC
GAACAGTTTTTCTATGCAGTTCGAATCGATCCGCGGTCCTTAGCAACGCG
TTGCTAAGGAATCTCTCGCTGCAGAGCAGAGAGATGAAATTTCATCCGAC
TTTGACAGCCCCGTGGAGCCTGTTTGGCGGCCTTTTTATGAATGTTGCGT
TATGTGTACCAGACGGGAATACCATGTGGCCTCGATTTCATTCATTTTCT
AAGGGTTTTACAACGATTCTAGTTAGGTTCGTGCTCATATACGTTATATA
GTGAAATCATGAACATGTCGGTGCCGTACTGAGCTACATTTTTGACAAAT
TTGAATTTCGGGGGAATTGCATTACGCCCTCGATTTTATTTTCAGTGACC
AGTACGTCAGAATCTTTCAATCTTCTAGTTTAACTCTTCTAAAATTCTTG
TTGGTTTGAAATTTGGACAGGTTTGTAATTTCACTTCTATTGAGGTCACA
TTCTCAACTGTTTTACACCAAAAATGTTGCAAGGCGTCGGTGTAGTTGAT
TTGAGTGCAGTCGACTTTTGGCAAAAGTTGCGGTACCGAAATGCCTGTCC
AGTATTGTCAAAGGAAGACTACAGCAACTTAATGCGTGAAGACGGGCTGA
ATTCGCAAAGGCTATCTTAGTTTTAAGGTTACTGGTACATAAACATAGCG
GCGCGGGTCTGGCGCGCGCGCTCTGGAACGGGCATGGGCGCCGGGGCTGA
CGCGTTCTTTTTTAGAATCAAAACGACGCCTATGATAAAGTGGCATCGCG
CGATTTAGCAGGAAGCCCATTTCGCACTCGAAATTGATAATAAATTATAT
ACCACCTAAAAGTACAGATTTTGATTTATTCTACGCAGTACATTTCTTTT
TGTTTTAAAATCGAAAATAGCGTAAAAACTCGAGGGGGATTTGCTCTAAA
ATCAACTGATTTCAGGTCATACCATCAGAAGGGTACAGGTAAAAAATCGG
TTCAAAAACTCTATATTAGTGAAATAGAAAACTTGAAAATTATAGATGCG
ATGAAATATTGAATATACATAGTTGTAAACTTAAGCAACAAGCTTTGTTG
TAGGTAGTCCCGAAGCCCGGGGGTCATGGAACGTACAACTGGCTCAAAAA
GCCGCGCGGTTCGGCATGGTACTTAATCAGAAATTTTGAACTTAGATTTA
TGTGACTTTGGGCTGGTATATTTACTTAAAACTCGGAATTCATAAACGGG
GGACCCCCTAAAACATAATTCTTGTCATAAATTTAAGACTTGTGGAACGA
TGATCTGTCCATAGTAGATAATTACAAAAAAGGTCGAACCGGGCGCGTTC
TATTCTGGAATCAAAATGATGACATGACCATGTGCGATTTCGGGGGAAAT
GCATTACGCCCTCGAAATCTATCACAAGTCATATACCACCAGAAACTAGA
AAGATTTCTCTTTTTCACGCAGTACATTTCCTGTTGGTTTGAAGTATACA
ACTGGATAAAAATAAGGGGAGAAAATACACGAAAATAACCTAATTTCGGG
GCGTATTGCTGACAAGAAAGTAATAAAATATCGGTTTAGAAATCTATAGG
AGTAGAAAACAAAGCTAAAATAGTGTAATTAACTTCAAATCAAAATGATA
TACGGTGATATACTCCCGCAACAAGCTTTCTTGTAAGGGGTGTTGACGCC
CGGAGTGATGGAACGGACTACTTTCTCTCGCGGAAGGAAAAGAAAACTGC
ATAGAACTCTCGGCATGGCGTGCCGGCTGTTTCAGCTGTATTTTCCGTCG
TACGACGCTCGGCGATCGCTAAACTGGCAATTTACCTGCGAGTGACCCAA
GTGAACTTGTGACTACGAAATAGTTGTCATGTGTAGTTCATTTGTTTATC
CTCCATAGCCATGGGTTCTAAGAGAGTGGCCATTATTGGAGCCGGAGTGA
GCGGACTCACGTCAATCAAAGCTTGTCTGGAGGAGGGGCTGCAGCCTGTT
TGTTTCGAGCAACATGAGGATCTCGGTAAGAACCAGACATTACAAGTCTT
AGATATTCATTTCAATAGCGTTCAAGAACAGAAGTAGCTAATTCCATTTA
ATGATGACAGACAATAAACATGCACCGTGGAATAGAATAGTGAAGCAGCA
GTACTGACTGTCCTTGAAGCATAAAAGAGATGAAGACAGAAGGGAAGGAT
GAAAGATTGTAAGTAATCCATGTGAACATGCGTGAGCGTATGTGGCTGTT
GGGGTATGGTAAATCATGCTAAACCTGTTGAAAAATCCCTATCATTTGTA
AAGTCAATAGGCTACCTGCTGCCATGCTGCTATCTTACTTATGATAACAT
GACTGTAGTCCCTAGAGGTACTTTGCATAGTAATGATATGTATACACAGA
AGGGCATAGACATGTCTTAGACTGGAGGTGAATCTAATTTGTTCCCTTGA
CTTCTACCTGCTGTGTGCTACTGCAAATAATCTCGATGCAAACTGCAATT
CCAGGCGGCGTGTGGTACTACTCTGACGATGTCAGGCCCAACCAGGGGGC
CGCCATGTACCGCTCTCTCATCACAAACTCCAGTAAAGAAATGATGTCAT
TCAGCGACTTCCCCTTTCCCAAGGACACGCCCCCCTACCTGCCGTACCAC
CGTGTGCACACATATCTACAGGACTACGCTCAGCACTTCGACCTGAAGAA
ACACATCCGATTCGGCACACAGGTGGGGATATTCTTGTTGAACCATTGAT
TCTATAACATCTGTACTAAGATCTTTGTTTTGATGTCCTTCTTTCTTACG
TTCAACGCTGTCTATCACTCCAGGTCAGTCGCATAGAGAAGACAGAAGAC
TTTGATGAGACTGGCCGGTGGGAGGTCCGTACTGTACAGACGGGTCACAG
CGATGGGGAACAGACAGAGATTTTTGACGCCATCATGGTACGTGCTAAGC
GCCGCCATAGAAACAGAAATGTTAAACACAGCAATGACTGATGATCTCCG
ATAAGAGTGAAGCGTAATAGACCCAGCCGTCCACTTACGCCATCTTCTAC
ATGAGGCTGAGGATGTGATGGTCCACCGTTCTTTGTAGCCTTGTATACAA
ACCTACTATAGCTCCCGAGTCTCCTCTCCGGAGAGGAGACTCGGAAGCTA
TAGTTTGGATACCAGGCTACGTTATTTGGCCCTTCCATACTAAGTAAACG
TCTCTCAACTTTGTCTCACTACTTTACTTCCTCCCTAGGTGTGTAACGGC
GTGTTCGCCCGGCCGTACGTTCCAGACGTGCCTGGTCTGTCGGACTTTGC
AGGTGTCACCATGCACAGTCAGGAGTACCGGACTGCCCAACAGTTCACGG
GGAAGAAGGTGGTTGTTGTAGGTAGGTCAGCTATTACCTTCCACTTACAC
ACCCAGGTTAAGTCATTCTTGTCTATACGTTTATCCCTACTACCCACATG
ACTTCAAATAACCTTCTTCATCCGCGATTCTGTCTCCAGGGGCGGGAAAC
TCTGCAGGCGACGTGGCGGCGGAGATCGCTCAGGTGGCGTCACAGGTGAG
ATTTTATGACAACTGTTGTCCTGTCGTCTCCTTCGATTCCTACGTTTTCT
CTTCTCTGCCAAACCGACAAATATTCATTATCCTAAAGGGACATACATGT
TTACATTGTAAACTGTTTGTATCAGTACTGAGAACACACGAAAGCTCCGT
TAGTCCATCCTTCCCTTCTCTATAGACGTAACGTTACACTGCTCACNAAA
TGGACATACATGTTTACATTGTTCTCTGTTTGTATCAGTACTGAGAACAC
ACGAAGGCCCCGTTAGTCCATCCTTCCCTTCTCTAAAGACGTAACATTAC
ACTGCTGACTGTTGACCACACTGACAACCCCATCCCGTTCCCAGGTATAC
CTGAGTCTGAGGGACGGTGCCTGGGTGCTTCCCCGGCTGGCTCAGGCCGG
GGTGCCGCGGGACATGATGCTGCGCCGGGTACTTATGGGCATGCCCGAGG
TCATCGTCAACAAAATCATCAAGGGCGAGGCGAACGCCAGAGTGTGTCAT
GACAACTACGGGCTGACGTGTCCGGCGGACCCGCTCAAACACTCCGTCAT
GGCGAATGACGAGATAGGTTTCAGACTGGCCNAGATAGGTTACAGACTGG
CCACTGGGCAGGTACGTTTATACAATAGTGTTTATCAATCTGATATATAA
CTGTTAATTGTGTTTGTTTAATGATAGACATGCAATATGTTTGGCGTTAT
TTCTGATGAGGTGATTAATGTATCTGTGGGGTACATGTGTATCTCGTCGT
TTATCTTGGCGGCAAATACTACTCATTTCTAAAGTCATGTCTGATCTGAT
GTGCTTCATATCTAATCTGATATGTACATGTAACCGTGACTGTCTGTCCT
TAACAGGTCCTCACGAAGCCCCAGCTCTCCCGGTTCACCCAGCACGCTGC
CCGGTTCGCGGACGGCAGTACAGTGGACGGGCTAGACGCCGTGGTATTCG
CCACTGGATTCAACCTGGCCTTTAACTTCAGTGACAAGTCCATCCTTAAT
AGTAAGTCCTAGCCCTATGCAGGGTTTTCAGTCCGTCACCTACACCGCAG
TTGAAAGCAAACTTAAGCTTATGTGGACTTTGATAGAGTTATCAGAAATG
TTTGTTTTCCTCTATAAAGCTGATAAGACTCACGTGGTGATTGCAAATCT
GTCTGTAGTGTATCTTTCCTTCACTTCATTTGTGTTTTAAATCAATGGAA
TATGGTACATGTATTTGAAAGCTCAAAGTGTCAAAGGTGTTCTTGTACCT
GCAGCTCAGAAGTACATTGCAAGATTAGAAACTTCGTTCATCCTATTCTT
CCTCAGATAACGCGGAGGACCTGAACTTGTACAAGTTGGTGTTCCCTGCG
GAGCTTACAAAACCCACCCTGTCTGTGATCGGCTGCCTGTCTACCATCGG
GGCACATCCTCCTATCTACGAACTACAGGCTCGCTGGGCCGTCAGGGTGT
TCTTGGTAAGTAGAACGTTTCAGTCATTCCGCCCTACGGGCATTCTTGTC
AAGTTGTTTGGATAGCCTAAATATATCAAATTGACTGAAGTGACCATGGC
AAACAAACGGGCAATTTATGATCAAATAAGCAAACAGCAGGTGTTTAAGT
AACTTTAACGTTTTCCATGGCAGCAAACCAATGCTATCTAAGTTATCAAT
CAAACACAAGAGACCGTGTTTTCACACAGGCGACTTATTTTGTTCCAGGG
TCTGAATAAGCTTCCCGATAAGGAGACCATGCTGAAGCGGATCCGCTCCG
ACAAACAGGAGCTGAAGCAGCGGTTCGGCTACGTCAAGCTGCAGGTAACA
TGATATTCTCATTTTTCAGACCGTTATAAATGGGCAGTATAAACTTAGGG
ACAGAGGAATAATGGGTATTATTGTTGTGCAGAAAAGAAAGTTGGGCAAG
AGACAATACACAGTTATGACTACAATTACACTAAAGTTAAAGCTGGTGTT
TCAGGCAATAATGGATATTTAGAAGAACATTGGATTCAAGCTATTCTCCT
TATATAGGAGCATAGGGGTCGTGCTTTTTTACTTATTATGTGCTGTATTT
TAGGTGGTGTATTAGTTCTGAATGTACCCCGTTTCTCACGGTAGTCAGCC
TCCCATGTTGACTTACAATCAGAAAATATATGATCCCTCCCCCAAGCAAA
ACCCGTACAATGAGCCTGCTAAGAAGTCTAAGAAGTGTTTATCTTAAGAA
ATAACGTAACGTGATAGGGACAGTCACGAAGTGTGTACTTCATGTTCACA
CTAACTTAAATGGCATCCTGTCTATGTTACAGATGATGAACGTGCCGTAC
CGGGATGACATTGCCGAAGAGATCGGAGTCAAACCATCATTTTGGAGGCT
CCTTCCTCGGGACCCAAAATTAGCTTTCCTCTGCTACTTCGGCCCCGCCT
TCTCTGTCCAGTACCGCCTGCTGGGGCCGCATCCCTGGTCAGGTGCAGCC
GGCCACGCCAAGTCAGCCCTGGCCAACACCCTGTACCCCTTCGGGTCACC
TGCTCTGGACAAGGAACAGTCGGGCCTTTCACTGGCCAAAGTTGTCAAGT
TTCTCTTGTTGGTCGGGGTGCTGATGGCGGTGTTTAATCGTTTTATGTAA
TATCAATCTAAACAAAGATCCCCAATTCCATACTTTGGAATGGTGATGTA
TTCTAGGATTGTTTTGATAAAGTGCTTCCTTGAAATCCCACTAAGGCTGC
ACCAAGTAATTTTTATGGATGACGTCCTTTGGAAACCCTAAATCTAATGC
GAGAGCGCGAAAAAAAAACAAGAAGGGCCGAAAAAACAAGATGCCTAGAT
TTGAAAAATCTTGTCAGCAGGAAACATCTGCACTGCTGACAGGATGATCA
GTAGAAAAATTGCACTACTGAGAGGACGATCCTGTCAGCAGTAGAAAAAA
TGCACTGCTGACAGGATGATCCAATTTTTTTTACTGATGACAGGATCATC
CTGACAGTAGGTAGCCACTTCCTTATCTATGCATTTTGCGTGACGAGTTA
TATGCATTTTGCGTGACGAGTTTTACATTAATCTTACGATTTCCGGCACT
GTCGTAACTCTTTGGTCATAGTTACAGGAAGCGGAATTTCTTGTTTTTTT
TCTGGGTACAGACCAAAATCAATGCGCGCGCGGACGTCATCCATAAAAAT
TACTTGGTGCAGCCTAATGTGAGTTTCACAAGAATCAATATTGTTATTTC
AAATGGAGTCTATGTACCATAGTTCAATGACATGTTGTTGTTTTGCCGCG
GTGTTCCACACTCACGATTTGAAAACAGAGCTAAGGGTTTGGTACTTCAT
ATAGTTTATAATGGGTGGATTAGTTACGATAAAATTGAGTAATACGGTTA
CAAATGGAGCTCATTAGACATTCACTACGCAGTGAGTATAGATATAGAGA
ATGTTATGATAAAATGCTATGGAGATCTCGAGAAGATGGGTGAATGCTGT
CTGTAGTTTCAAACGATAGTGACAATGCCTGTTACTGCCTACCTAGACAT
GGCAAAAGTTAAACTAAAGTGTAACGTTATAGTGAATAAAATGAAGAACG
AATATTGCATCCACTCAAAATGTACCAAGATTCTTTTTTTCAATCCGTCT
TGTCAATTTTTACTATTGCAACCGACTGAGTTTAGTAAAGACTAATGAAC

Coding sequence (CDS) from alignment at Sc0000230:38743..47442-

>BlTCONS00113738 ID=BlTCONS00113738|Name=BlTCONS00113738|organism=Branchiostoma lanceolatum|type=CDS|length=942bp|location=Sequence derived from alignment at Sc0000230:38743..47442- (Branchiostoma lanceolatum)
ATGGGTTCTAAGAGAGTGGCCATTATTGGAGCCGGAGTGAGCGGACTCAC
GTCAATCAAAGCTTGTCTGGAGGAGGGGCTGCAGCCTGTTTGTTTCGAGC
AACATGAGGATCTCGGCGGCGTGTGGTACTACTCTGACGATGTCAGGCCC
AACCAGGGGGCCGCCATGTACCGCTCTCTCATCACAAACTCCAGTAAAGA
AATGATGTCATTCAGCGACTTCCCCTTTCCCAAGGACACGCCCCCCTACC
TGCCGTACCACCGTGTGCACACATATCTACAGGACTACGCTCAGCACTTC
GACCTGAAGAAACACATCCGATTCGGCACACAGGTCAGTCGCATAGAGAA
GACAGAAGACTTTGATGAGACTGGCCGGTGGGAGGTCCGTACTGTACAGA
CGGGTCACAGCGATGGGGAACAGACAGAGATTTTTGACGCCATCATGGTG
TGTAACGGCGTGTTCGCCCGGCCGTACGTTCCAGACGTGCCTGGTCTGTC
GGACTTTGCAGGTGTCACCATGCACAGTCAGGAGTACCGGACTGCCCAAC
AGTTCACGGGGAAGAAGGTGGTTGTTGTAGGGGCGGGAAACTCTGCAGGC
GACGTGGCGGCGGAGATCGCTCAGGTGGCGTCACAGGTATACCTGAGTCT
GAGGGACGGTGCCTGGGTGCTTCCCCGGCTGGCTCAGGCCGGGGTGCCGC
GGGACATGATGCTGCGCCGGGTACTTATGGGCATGCCCGAGGTCATCGTC
AACAAAATCATCAAGGGCGAGGCGAACGCCAGAGTGTGTCATGACAACTA
CGGGCTGACGTGTCCGGCGGACCCGCTCAAACACTCCGTCATGGCGAATG
ACGAGATAGGTTTCAGACTGGCCNAGATAGGTTACAGACTGGCCACTGGG
CAGGTACGTTTATACAATAGTGTTTATCAATCTGATATATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113738BlTCONS00113738-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113738-exon-Sc0000230-1564993656:46691..47442BlTCONS00113738-exon-Sc0000230-1564993656:46691..47442Branchiostoma lanceolatumexon
BlTCONS00113738-exon-Sc0000230-1564993656:43918..44034BlTCONS00113738-exon-Sc0000230-1564993656:43918..44034Branchiostoma lanceolatumexon
BlTCONS00113738-exon-Sc0000230-1564993656:43221..43438BlTCONS00113738-exon-Sc0000230-1564993656:43221..43438Branchiostoma lanceolatumexon
BlTCONS00113738-exon-Sc0000230-1564993656:43006..43119BlTCONS00113738-exon-Sc0000230-1564993656:43006..43119Branchiostoma lanceolatumexon
BlTCONS00113738-exon-Sc0000230-1564993656:42572..42704BlTCONS00113738-exon-Sc0000230-1564993656:42572..42704Branchiostoma lanceolatumexon
BlTCONS00113738-exon-Sc0000230-1564993656:42398..42453BlTCONS00113738-exon-Sc0000230-1564993656:42398..42453Branchiostoma lanceolatumexon
BlTCONS00113738-exon-Sc0000230-1564993656:41392..42048BlTCONS00113738-exon-Sc0000230-1564993656:41392..42048Branchiostoma lanceolatumexon
BlTCONS00113738-exon-Sc0000230-1564993656:40938..41086BlTCONS00113738-exon-Sc0000230-1564993656:40938..41086Branchiostoma lanceolatumexon
BlTCONS00113738-exon-Sc0000230-1564993656:40599..40694BlTCONS00113738-exon-Sc0000230-1564993656:40599..40694Branchiostoma lanceolatumexon
BlTCONS00113738-exon-Sc0000230-1564993656:38743..40110BlTCONS00113738-exon-Sc0000230-1564993656:38743..40110Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000230genomeSc0000230:38743..47442 -
Properties
Property NameValue
GeneIDBlCUFF055760