BlTCONS00113737 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113737
Unique NameBlTCONS00113737
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000230:38743..46936-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113737 ID=BlTCONS00113737|Name=BlTCONS00113737|organism=Branchiostoma lanceolatum|type=mRNA|length=8194bp|location=Sequence derived from alignment at Sc0000230:38743..46936- (Branchiostoma lanceolatum)
TCTTCGTCGAAAATGCGTTTCTCTTCCGAGAAAAGGTGGGCAAAGGTACA TAAACATGAGTTCAGTGAATATAAAGGAGTTGAGAAGCTGGTCGGGAGCT CGAGCGCCTGTCGACAACATACATGACATACGTGTAAAGGCTAGGGTTTG CCCAGGAACGCACAGTGTTGGTGAGTTCCTACCACAGTGTGGAAACCTGT TCTCACACAGCACGACCAGCGGATATCGGCGGACTACATTCACAAGGTTA GACTTGTGTGAACGAATTCGGGACACATTTACAGAATACGCACGCCCTTT ATTTTAAGTTTTATAGGAATATATTTCATGGCTTATTTTATTTTCCGGCC ACCTATTGTGTGTGTACTAATGCCACGGTCGCAAACGTCGTAGGTCACCG AACGATTGTGTCAAGGGAGGGTTCGTGGGTCAGCCGCACGATAATCGCAG GTGAAATAAGCTATCGCTGAGCGTCGTGCGTGATCTTCTTCCATCGTCGT ACGATTTCTCTAGACACATTCATGCTGTACAGTGTACATCTTTTAGTTTT ATCTGTCGGGCCCTAGGAGCTACTGTTATGTTCCAGTATCCCAGCTGGCC TGCTATTTGCTATTTTTCTTGGTGGGGACTTTCTGGGGGCCATCACAAGC AAAATATCCCAGCTCTTGGCAAACTGACCACAGAGACAGTGATGAGGTCT GATCTAGTTGTGTACCTACGACATTCCTACGTGGATATAGCCGTGTAACA ATTGTATGCATCACATGCACGTGATTCTGGATCTGACAACGGGCGAGCTG TTCTCTGGTTGCTACTGTGTTCTCAAAATGGCTACATTTTTCAACTGTCA ATATCAAGGAAAATCAAAATCGCCAGAACGCGGTCTAATTTGTCACCTCA TAAAGAAAAAGAAGGCAATCACTGTGTATCCTGCCATGGGCGCTGCCATG GGGGCTACAAAAGTTGAACGACGATGACAACATTTTGAACATATTCAAAA CCCCTTTCCAGCCGGCACGCCATGGGCTTCACAGAACACGAATCGAACAG TTTTTCTATGCAGTTCGAATCGATCCGCGGTCCTTAGCAACGCGTTGCTA AGGAATCTCTCGCTGCAGAGCAGAGAGATGAAATTTCATCCGACTTTGAC AGCCCCGTGGAGCCTGTTTGGCGGCCTTTTTATGAATGTTGCGTTATGTG TACCAGACGGGAATACCATGTGGCCTCGATTTCATTCATTTTCTAAGGGT TTTACAACGATTCTAGTTAGGTTCGTGCTCATATACGTTATATAGTGAAA TCATGAACATGTCGGTGCCGTACTGAGCTACATTTTTGACAAATTTGAAT TTCGGGGGAATTGCATTACGCCCTCGATTTTATTTTCAGTGACCAGTACG TCAGAATCTTTCAATCTTCTAGTTTAACTCTTCTAAAATTCTTGTTGGTT TGAAATTTGGACAGGTTTGTAATTTCACTTCTATTGAGGTCACATTCTCA ACTGTTTTACACCAAAAATGTTGCAAGGCGTCGGTGTAGTTGATTTGAGT GCAGTCGACTTTTGGCAAAAGTTGCGGTACCGAAATGCCTGTCCAGTATT GTCAAAGGAAGACTACAGCAACTTAATGCGTGAAGACGGGCTGAATTCGC AAAGGCTATCTTAGTTTTAAGGTTACTGGTACATAAACATAGCGGCGCGG GTCTGGCGCGCGCGCTCTGGAACGGGCATGGGCGCCGGGGCTGACGCGTT CTTTTTTAGAATCAAAACGACGCCTATGATAAAGTGGCATCGCGCGATTT AGCAGGAAGCCCATTTCGCACTCGAAATTGATAATAAATTATATACCACC TAAAAGTACAGATTTTGATTTATTCTACGCAGTACATTTCTTTTTGTTTT AAAATCGAAAATAGCGTAAAAACTCGAGGGGGATTTGCTCTAAAATCAAC TGATTTCAGGTCATACCATCAGAAGGGTACAGGTAAAAAATCGGTTCAAA AACTCTATATTAGTGAAATAGAAAACTTGAAAATTATAGATGCGATGAAA TATTGAATATACATAGTTGTAAACTTAAGCAACAAGCTTTGTTGTAGGTA GTCCCGAAGCCCGGGGGTCATGGAACGTACAACTGGCTCAAAAAGCCGCG CGGTTCGGCATGGTACTTAATCAGAAATTTTGAACTTAGATTTATGTGAC TTTGGGCTGGTATATTTACTTAAAACTCGGAATTCATAAACGGGGGACCC CCTAAAACATAATTCTTGTCATAAATTTAAGACTTGTGGAACGATGATCT GTCCATAGTAGATAATTACAAAAAAGGTCGAACCGGGCGCGTTCTATTCT GGAATCAAAATGATGACATGACCATGTGCGATTTCGGGGGAAATGCATTA CGCCCTCGAAATCTATCACAAGTCATATACCACCAGAAACTAGAAAGATT TCTCTTTTTCACGCAGTACATTTCCTGTTGGTTTGAAGTATACAACTGGA TAAAAATAAGGGGAGAAAATACACGAAAATAACCTAATTTCGGGGCGTAT TGCTGACAAGAAAGTAATAAAATATCGGTTTAGAAATCTATAGGAGTAGA AAACAAAGCTAAAATAGTGTAATTAACTTCAAATCAAAATGATATACGGT GATATACTCCCGCAACAAGCTTTCTTGTAAGGGGTGTTGACGCCCGGAGT GATGGAACGGACTACTTTCTCTCGCGGAAGGAAAAGAAAACTGCATAGAA CTCTCGGCATGGCGTGCCGGCTGTTTCAGCTGTATTTTCCGTCGTACGAC GCTCGGCGATCGCTAAACTGGCAATTTACCTGCGAGTGACCCAAGTGAAC TTGTGACTACGAAATAGTTGTCATGTGTAGTTCATTTGTTTATCCTCCAT AGCCATGGGTTCTAAGAGAGTGGCCATTATTGGAGCCGGAGTGAGCGGAC TCACGTCAATCAAAGCTTGTCTGGAGGAGGGGCTGCAGCCTGTTTGTTTC GAGCAACATGAGGATCTCGGTAAGAACCAGACATTACAAGTCTTAGATAT TCATTTCAATAGCGTTCAAGAACAGAAGTAGCTAATTCCATTTAATGATG ACAGACAATAAACATGCACCGTGGAATAGAATAGTGAAGCAGCAGTACTG ACTGTCCTTGAAGCATAAAAGAGATGAAGACAGAAGGGAAGGATGAAAGA TTGTAAGTAATCCATGTGAACATGCGTGAGCGTATGTGGCTGTTGGGGTA TGGTAAATCATGCTAAACCTGTTGAAAAATCCCTATCATTTGTAAAGTCA ATAGGCTACCTGCTGCCATGCTGCTATCTTACTTATGATAACATGACTGT AGTCCCTAGAGGTACTTTGCATAGTAATGATATGTATACACAGAAGGGCA TAGACATGTCTTAGACTGGAGGTGAATCTAATTTGTTCCCTTGACTTCTA CCTGCTGTGTGCTACTGCAAATAATCTCGATGCAAACTGCAATTCCAGGC GGCGTGTGGTACTACTCTGACGATGTCAGGCCCAACCAGGGGGCCGCCAT GTACCGCTCTCTCATCACAAACTCCAGTAAAGAAATGATGTCATTCAGCG ACTTCCCCTTTCCCAAGGACACGCCCCCCTACCTGCCGTACCACCGTGTG CACACATATCTACAGGACTACGCTCAGCACTTCGACCTGAAGAAACACAT CCGATTCGGCACACAGGTGGGGATATTCTTGTTGAACCATTGATTCTATA ACATCTGTACTAAGATCTTTGTTTTGATGTCCTTCTTTCTTACGTTCAAC GCTGTCTATCACTCCAGGTCAGTCGCATAGAGAAGACAGAAGACTTTGAT GAGACTGGCCGGTGGGAGGTCCGTACTGTACAGACGGGTCACAGCGATGG GGAACAGACAGAGATTTTTGACGCCATCATGGTACGTGCTAAGCGCCGCC ATAGAAACAGAAATGTTAAACACAGCAATGACTGATGATCTCCGATAAGA GTGAAGCGTAATAGACCCAGCCGTCCACTTACGCCATCTTCTACATGAGG CTGAGGATGTGATGGTCCACCGTTCTTTGTAGCCTTGTATACAAACCTAC TATAGCTCCCGAGTCTCCTCTCCGGAGAGGAGACTCGGAAGCTATAGTTT GGATACCAGGCTACGTTATTTGGCCCTTCCATACTAAGTAAACGTCTCTC AACTTTGTCTCACTACTTTACTTCCTCCCTAGGTGTGTAACGGCGTGTTC GCCCGGCCGTACGTTCCAGACGTGCCTGGTCTGTCGGACTTTGCAGGTGT CACCATGCACAGTCAGGAGTACCGGACTGCCCAACAGTTCACGGGGAAGA AGGTGGTTGTTGTAGGTAGGTCAGCTATTACCTTCCACTTACACACCCAG GTTAAGTCATTCTTGTCTATACGTTTATCCCTACTACCCACATGACTTCA AATAACCTTCTTCATCCGCGATTCTGTCTCCAGGGGCGGGAAACTCTGCA GGCGACGTGGCGGCGGAGATCGCTCAGGTGGCGTCACAGGTGAGATTTTA TGACAACTGTTGTCCTGTCGTCTCCTTCGATTCCTACGTTTTCTCTTCTC TGCCAAACCGACAAATATTCATTATCCTAAAGGGACATACATGTTTACAT TGTAAACTGTTTGTATCAGTACTGAGAACACACGAAAGCTCCGTTAGTCC ATCCTTCCCTTCTCTATAGACGTAACGTTACACTGCTCACNAAATGGACA TACATGTTTACATTGTTCTCTGTTTGTATCAGTACTGAGAACACACGAAG GCCCCGTTAGTCCATCCTTCCCTTCTCTAAAGACGTAACATTACACTGCT GACTGTTGACCACACTGACAACCCCATCCCGTTCCCAGGTATACCTGAGT CTGAGGGACGGTGCCTGGGTGCTTCCCCGGCTGGCTCAGGCCGGGGTGCC GCGGGACATGATGCTGCGCCGGGTACTTATGGGCATGCCCGAGGTCATCG TCAACAAAATCATCAAGGGCGAGGCGAACGCCAGAGTGTGTCATGACAAC TACGGGCTGACGTGTCCGGCGGACCCGCTCAAACACTCCGTCATGGCGAA TGACGAGATAGGTTTCAGACTGGCCNAGATAGGTTACAGACTGGCCACTG GGCAGGTACGTTTATACAATAGTGTTTATCAATCTGATATATAACTGTTA ATTGTGTTTGTTTAATGATAGACATGCAATATGTTTGGCGTTATTTCTGA TGAGGTGATTAATGTATCTGTGGGGTACATGTGTATCTCGTCGTTTATCT TGGCGGCAAATACTACTCATTTCTAAAGTCATGTCTGATCTGATGTGCTT CATATCTAATCTGATATGTACATGTAACCGTGACTGTCTGTCCTTAACAG GTCCTCACGAAGCCCCAGCTCTCCCGGTTCACCCAGCACGCTGCCCGGTT CGCGGACGGCAGTACAGTGGACGGGCTAGACGCCGTGGTATTCGCCACTG GATTCAACCTGGCCTTTAACTTCAGTGACAAGTCCATCCTTAATAGTAAG TCCTAGCCCTATGCAGGGTTTTCAGTCCGTCACCTACACCGCAGTTGAAA GCAAACTTAAGCTTATGTGGACTTTGATAGAGTTATCAGAAATGTTTGTT TTCCTCTATAAAGCTGATAAGACTCACGTGGTGATTGCAAATCTGTCTGT AGTGTATCTTTCCTTCACTTCATTTGTGTTTTAAATCAATGGAATATGGT ACATGTATTTGAAAGCTCAAAGTGTCAAAGGTGTTCTTGTACCTGCAGCT CAGAAGTACATTGCAAGATTAGAAACTTCGTTCATCCTATTCTTCCTCAG ATAACGCGGAGGACCTGAACTTGTACAAGTTGGTGTTCCCTGCGGAGCTT ACAAAACCCACCCTGTCTGTGATCGGCTGCCTGTCTACCATCGGGGCACA TCCTCCTATCTACGAACTACAGGCTCGCTGGGCCGTCAGGGTGTTCTTGG TAAGTAGAACGTTTCAGTCATTCCGCCCTACGGGCATTCTTGTCAAGTTG TTTGGATAGCCTAAATATATCAAATTGACTGAAGTGACCATGGCAAACAA ACGGGCAATTTATGATCAAATAAGCAAACAGCAGGTGTTTAAGTAACTTT AACGTTTTCCATGGCAGCAAACCAATGCTATCTAAGTTATCAATCAAACA CAAGAGACCGTGTTTTCACACAGGCGACTTATTTTGTTCCAGGGTCTGAA TAAGCTTCCCGATAAGGAGACCATGCTGAAGCGGATCCGCTCCGACAAAC AGGAGCTGAAGCAGCGGTTCGGCTACGTCAAGCTGCAGGTAACATGATAT TCTCATTTTTCAGACCGTTATAAATGGGCAGTATAAACTTAGGGACAGAG GAATAATGGGTATTATTGTTGTGCAGAAAAGAAAGTTGGGCAAGAGACAA TACACAGTTATGACTACAATTACACTAAAGTTAAAGCTGGTGTTTCAGGC AATAATGGATATTTAGAAGAACATTGGATTCAAGCTATTCTCCTTATATA GGAGCATAGGGGTCGTGCTTTTTTACTTATTATGTGCTGTATTTTAGGTG GTGTATTAGTTCTGAATGTACCCCGTTTCTCACGGTAGTCAGCCTCCCAT GTTGACTTACAATCAGAAAATATATGATCCCTCCCCCAAGCAAAACCCGT ACAATGAGCCTGCTAAGAAGTCTAAGAAGTGTTTATCTTAAGAAATAACG TAACGTGATAGGGACAGTCACGAAGTGTGTACTTCATGTTCACACTAACT TAAATGGCATCCTGTCTATGTTACAGATGATGAACGTGCCGTACCGGGAT GACATTGCCGAAGAGATCGGAGTCAAACCATCATTTTGGAGGCTCCTTCC TCGGGACCCAAAATTAGCTTTCCTCTGCTACTTCGGCCCCGCCTTCTCTG TCCAGTACCGCCTGCTGGGGCCGCATCCCTGGTCAGGTGCAGCCGGCCAC GCCAAGTCAGCCCTGGCCAACACCCTGTACCCCTTCGGGTCACCTGCTCT GGACAAGGAACAGTCGGGCCTTTCACTGGCCAAAGTTGTCAAGTTTCTCT TGTTGGTCGGGGTGCTGATGGCGGTGTTTAATCGTTTTATGTAATATCAA TCTAAACAAAGATCCCCAATTCCATACTTTGGAATGGTGATGTATTCTAG GATTGTTTTGATAAAGTGCTTCCTTGAAATCCCACTAAGGCTGCACCAAG TAATTTTTATGGATGACGTCCTTTGGAAACCCTAAATCTAATGCGAGAGC GCGAAAAAAAAACAAGAAGGGCCGAAAAAACAAGATGCCTAGATTTGAAA AATCTTGTCAGCAGGAAACATCTGCACTGCTGACAGGATGATCAGTAGAA AAATTGCACTACTGAGAGGACGATCCTGTCAGCAGTAGAAAAAATGCACT GCTGACAGGATGATCCAATTTTTTTTACTGATGACAGGATCATCCTGACA GTAGGTAGCCACTTCCTTATCTATGCATTTTGCGTGACGAGTTATATGCA TTTTGCGTGACGAGTTTTACATTAATCTTACGATTTCCGGCACTGTCGTA ACTCTTTGGTCATAGTTACAGGAAGCGGAATTTCTTGTTTTTTTTCTGGG TACAGACCAAAATCAATGCGCGCGCGGACGTCATCCATAAAAATTACTTG GTGCAGCCTAATGTGAGTTTCACAAGAATCAATATTGTTATTTCAAATGG AGTCTATGTACCATAGTTCAATGACATGTTGTTGTTTTGCCGCGGTGTTC CACACTCACGATTTGAAAACAGAGCTAAGGGTTTGGTACTTCATATAGTT TATAATGGGTGGATTAGTTACGATAAAATTGAGTAATACGGTTACAAATG GAGCTCATTAGACATTCACTACGCAGTGAGTATAGATATAGAGAATGTTA TGATAAAATGCTATGGAGATCTCGAGAAGATGGGTGAATGCTGTCTGTAG TTTCAAACGATAGTGACAATGCCTGTTACTGCCTACCTAGACATGGCAAA AGTTAAACTAAAGTGTAACGTTATAGTGAATAAAATGAAGAACGAATATT GCATCCACTCAAAATGTACCAAGATTCTTTTTTTCAATCCGTCTTGTCAA TTTTTACTATTGCAACCGACTGAGTTTAGTAAAGACTAATGAAC

Coding sequence (CDS) from alignment at Sc0000230:38743..46936-

>BlTCONS00113737 ID=BlTCONS00113737|Name=BlTCONS00113737|organism=Branchiostoma lanceolatum|type=CDS|length=1647bp|location=Sequence derived from alignment at Sc0000230:38743..46936- (Branchiostoma lanceolatum)
CTTCGTCGAAAATGCGTTTCTCTTCCGAGAAAAGCCATGGGTTCTAAGAG
AGTGGCCATTATTGGAGCCGGAGTGAGCGGACTCACGTCAATCAAAGCTT
GTCTGGAGGAGGGGCTGCAGCCTGTTTGTTTCGAGCAACATGAGGATCTC
GGCGGCGTGTGGTACTACTCTGACGATGTCAGGCCCAACCAGGGGGCCGC
CATGTACCGCTCTCTCATCACAAACTCCAGTAAAGAAATGATGTCATTCA
GCGACTTCCCCTTTCCCAAGGACACGCCCCCCTACCTGCCGTACCACCGT
GTGCACACATATCTACAGGACTACGCTCAGCACTTCGACCTGAAGAAACA
CATCCGATTCGGCACACAGGTCAGTCGCATAGAGAAGACAGAAGACTTTG
ATGAGACTGGCCGGTGGGAGGTCCGTACTGTACAGACGGGTCACAGCGAT
GGGGAACAGACAGAGATTTTTGACGCCATCATGGTGTGTAACGGCGTGTT
CGCCCGGCCGTACGTTCCAGACGTGCCTGGTCTGTCGGACTTTGCAGGTG
TCACCATGCACAGTCAGGAGTACCGGACTGCCCAACAGTTCACGGGGAAG
AAGGTGGTTGTTGTAGGGGCGGGAAACTCTGCAGGCGACGTGGCGGCGGA
GATCGCTCAGGTGGCGTCACAGGTATACCTGAGTCTGAGGGACGGTGCCT
GGGTGCTTCCCCGGCTGGCTCAGGCCGGGGTGCCGCGGGACATGATGCTG
CGCCGGGTACTTATGGGCATGCCCGAGGTCATCGTCAACAAAATCATCAA
GGGCGAGGCGAACGCCAGAGTGTGTCATGACAACTACGGGCTGACGTGTC
CGGCGGACCCGCTCAAACACTCCGTCATGGCGAATGACGAGATAGGTTTC
AGACTGGCCNAGATAGGTTACAGACTGGCCACTGGGCAGGTCCTCACGAA
GCCCCAGCTCTCCCGGTTCACCCAGCACGCTGCCCGGTTCGCGGACGGCA
GTACAGTGGACGGGCTAGACGCCGTGGTATTCGCCACTGGATTCAACCTG
GCCTTTAACTTCAGTGACAAGTCCATCCTTAATAATAACGCGGAGGACCT
GAACTTGTACAAGTTGGTGTTCCCTGCGGAGCTTACAAAACCCACCCTGT
CTGTGATCGGCTGCCTGTCTACCATCGGGGCACATCCTCCTATCTACGAA
CTACAGGCTCGCTGGGCCGTCAGGGTGTTCTTGGGTCTGAATAAGCTTCC
CGATAAGGAGACCATGCTGAAGCGGATCCGCTCCGACAAACAGGAGCTGA
AGCAGCGGTTCGGCTACGTCAAGCTGCAGATGATGAACGTGCCGTACCGG
GATGACATTGCCGAAGAGATCGGAGTCAAACCATCATTTTGGAGGCTCCT
TCCTCGGGACCCAAAATTAGCTTTCCTCTGCTACTTCGGCCCCGCCTTCT
CTGTCCAGTACCGCCTGCTGGGGCCGCATCCCTGGTCAGGTGCAGCCGGC
CACGCCAAGTCAGCCCTGGCCAACACCCTGTACCCCTTCGGGTCACCTGC
TCTGGACAAGGAACAGTCGGGCCTTTCACTGGCCAAAGTTGTCAAGTTTC
TCTTGTTGGTCGGGGTGCTGATGGCGGTGTTTAATCGTTTTATGTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113737-exon-Sc0000230-1564993656:46902..46936BlTCONS00113737-exon-Sc0000230-1564993656:46902..46936Branchiostoma lanceolatumexon
BlTCONS00113737-exon-Sc0000230-1564993656:43918..44034BlTCONS00113737-exon-Sc0000230-1564993656:43918..44034Branchiostoma lanceolatumexon
BlTCONS00113737-exon-Sc0000230-1564993656:43221..43438BlTCONS00113737-exon-Sc0000230-1564993656:43221..43438Branchiostoma lanceolatumexon
BlTCONS00113737-exon-Sc0000230-1564993656:43006..43119BlTCONS00113737-exon-Sc0000230-1564993656:43006..43119Branchiostoma lanceolatumexon
BlTCONS00113737-exon-Sc0000230-1564993656:42572..42704BlTCONS00113737-exon-Sc0000230-1564993656:42572..42704Branchiostoma lanceolatumexon
BlTCONS00113737-exon-Sc0000230-1564993656:42398..42453BlTCONS00113737-exon-Sc0000230-1564993656:42398..42453Branchiostoma lanceolatumexon
BlTCONS00113737-exon-Sc0000230-1564993656:41782..42048BlTCONS00113737-exon-Sc0000230-1564993656:41782..42048Branchiostoma lanceolatumexon
BlTCONS00113737-exon-Sc0000230-1564993656:41392..41536BlTCONS00113737-exon-Sc0000230-1564993656:41392..41536Branchiostoma lanceolatumexon
BlTCONS00113737-exon-Sc0000230-1564993656:40938..41086BlTCONS00113737-exon-Sc0000230-1564993656:40938..41086Branchiostoma lanceolatumexon
BlTCONS00113737-exon-Sc0000230-1564993656:40599..40694BlTCONS00113737-exon-Sc0000230-1564993656:40599..40694Branchiostoma lanceolatumexon
BlTCONS00113737-exon-Sc0000230-1564993656:38743..40110BlTCONS00113737-exon-Sc0000230-1564993656:38743..40110Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113737BlTCONS00113737-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000230genomeSc0000230:38743..46936 -
Properties
Property NameValue
GeneIDBlCUFF055760