BlTCONS00113736 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113736
Unique NameBlTCONS00113736
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000230:38743..43941-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113736 ID=BlTCONS00113736|Name=BlTCONS00113736|organism=Branchiostoma lanceolatum|type=mRNA|length=5199bp|location=Sequence derived from alignment at Sc0000230:38743..43941- (Branchiostoma lanceolatum)
GTTTCGAGCAACATGAGGATCTCGGTAAGAACCAGACATTACAAGTCTTA
GATATTCATTTCAATAGCGTTCAAGAACAGAAGTAGCTAATTCCATTTAA
TGATGACAGACAATAAACATGCACCGTGGAATAGAATAGTGAAGCAGCAG
TACTGACTGTCCTTGAAGCATAAAAGAGATGAAGACAGAAGGGAAGGATG
AAAGATTGTAAGTAATCCATGTGAACATGCGTGAGCGTATGTGGCTGTTG
GGGTATGGTAAATCATGCTAAACCTGTTGAAAAATCCCTATCATTTGTAA
AGTCAATAGGCTACCTGCTGCCATGCTGCTATCTTACTTATGATAACATG
ACTGTAGTCCCTAGAGGTACTTTGCATAGTAATGATATGTATACACAGAA
GGGCATAGACATGTCTTAGACTGGAGGTGAATCTAATTTGTTCCCTTGAC
TTCTACCTGCTGTGTGCTACTGCAAATAATCTCGATGCAAACTGCAATTC
CAGGCGGCGTGTGGTACTACTCTGACGATGTCAGGCCCAACCAGGGGGCC
GCCATGTACCGCTCTCTCATCACAAACTCCAGTAAAGAAATGATGTCATT
CAGCGACTTCCCCTTTCCCAAGGACACGCCCCCCTACCTGCCGTACCACC
GTGTGCACACATATCTACAGGACTACGCTCAGCACTTCGACCTGAAGAAA
CACATCCGATTCGGCACACAGGTGGGGATATTCTTGTTGAACCATTGATT
CTATAACATCTGTACTAAGATCTTTGTTTTGATGTCCTTCTTTCTTACGT
TCAACGCTGTCTATCACTCCAGGTCAGTCGCATAGAGAAGACAGAAGACT
TTGATGAGACTGGCCGGTGGGAGGTCCGTACTGTACAGACGGGTCACAGC
GATGGGGAACAGACAGAGATTTTTGACGCCATCATGGTACGTGCTAAGCG
CCGCCATAGAAACAGAAATGTTAAACACAGCAATGACTGATGATCTCCGA
TAAGAGTGAAGCGTAATAGACCCAGCCGTCCACTTACGCCATCTTCTACA
TGAGGCTGAGGATGTGATGGTCCACCGTTCTTTGTAGCCTTGTATACAAA
CCTACTATAGCTCCCGAGTCTCCTCTCCGGAGAGGAGACTCGGAAGCTAT
AGTTTGGATACCAGGCTACGTTATTTGGCCCTTCCATACTAAGTAAACGT
CTCTCAACTTTGTCTCACTACTTTACTTCCTCCCTAGGTGTGTAACGGCG
TGTTCGCCCGGCCGTACGTTCCAGACGTGCCTGGTCTGTCGGACTTTGCA
GGTGTCACCATGCACAGTCAGGAGTACCGGACTGCCCAACAGTTCACGGG
GAAGAAGGTGGTTGTTGTAGGTAGGTCAGCTATTACCTTCCACTTACACA
CCCAGGTTAAGTCATTCTTGTCTATACGTTTATCCCTACTACCCACATGA
CTTCAAATAACCTTCTTCATCCGCGATTCTGTCTCCAGGGGCGGGAAACT
CTGCAGGCGACGTGGCGGCGGAGATCGCTCAGGTGGCGTCACAGGTGAGA
TTTTATGACAACTGTTGTCCTGTCGTCTCCTTCGATTCCTACGTTTTCTC
TTCTCTGCCAAACCGACAAATATTCATTATCCTAAAGGGACATACATGTT
TACATTGTAAACTGTTTGTATCAGTACTGAGAACACACGAAAGCTCCGTT
AGTCCATCCTTCCCTTCTCTATAGACGTAACGTTACACTGCTCACNAAAT
GGACATACATGTTTACATTGTTCTCTGTTTGTATCAGTACTGAGAACACA
CGAAGGCCCCGTTAGTCCATCCTTCCCTTCTCTAAAGACGTAACATTACA
CTGCTGACTGTTGACCACACTGACAACCCCATCCCGTTCCCAGGTATACC
TGAGTCTGAGGGACGGTGCCTGGGTGCTTCCCCGGCTGGCTCAGGCCGGG
GTGCCGCGGGACATGATGCTGCGCCGGGTACTTATGGGCATGCCCGAGGT
CATCGTCAACAAAATCATCAAGGGCGAGGCGAACGCCAGAGTGTGTCATG
ACAACTACGGGCTGACGTGTCCGGCGGACCCGCTCAAACACTCCGTCATG
GCGAATGACGAGATAGGTTTCAGACTGGCCNAGATAGGTTACAGACTGGC
CACTGGGCAGGTACGTTTATACAATAGTGTTTATCAATCTGATATATAAC
TGTTAATTGTGTTTGTTTAATGATAGACATGCAATATGTTTGGCGTTATT
TCTGATGAGGTGATTAATGTATCTGTGGGGTACATGTGTATCTCGTCGTT
TATCTTGGCGGCAAATACTACTCATTTCTAAAGTCATGTCTGATCTGATG
TGCTTCATATCTAATCTGATATGTACATGTAACCGTGACTGTCTGTCCTT
AACAGGTCCTCACGAAGCCCCAGCTCTCCCGGTTCACCCAGCACGCTGCC
CGGTTCGCGGACGGCAGTACAGTGGACGGGCTAGACGCCGTGGTATTCGC
CACTGGATTCAACCTGGCCTTTAACTTCAGTGACAAGTCCATCCTTAATA
GTAAGTCCTAGCCCTATGCAGGGTTTTCAGTCCGTCACCTACACCGCAGT
TGAAAGCAAACTTAAGCTTATGTGGACTTTGATAGAGTTATCAGAAATGT
TTGTTTTCCTCTATAAAGCTGATAAGACTCACGTGGTGATTGCAAATCTG
TCTGTAGTGTATCTTTCCTTCACTTCATTTGTGTTTTAAATCAATGGAAT
ATGGTACATGTATTTGAAAGCTCAAAGTGTCAAAGGTGTTCTTGTACCTG
CAGCTCAGAAGTACATTGCAAGATTAGAAACTTCGTTCATCCTATTCTTC
CTCAGATAACGCGGAGGACCTGAACTTGTACAAGTTGGTGTTCCCTGCGG
AGCTTACAAAACCCACCCTGTCTGTGATCGGCTGCCTGTCTACCATCGGG
GCACATCCTCCTATCTACGAACTACAGGCTCGCTGGGCCGTCAGGGTGTT
CTTGGTAAGTAGAACGTTTCAGTCATTCCGCCCTACGGGCATTCTTGTCA
AGTTGTTTGGATAGCCTAAATATATCAAATTGACTGAAGTGACCATGGCA
AACAAACGGGCAATTTATGATCAAATAAGCAAACAGCAGGTGTTTAAGTA
ACTTTAACGTTTTCCATGGCAGCAAACCAATGCTATCTAAGTTATCAATC
AAACACAAGAGACCGTGTTTTCACACAGGCGACTTATTTTGTTCCAGGGT
CTGAATAAGCTTCCCGATAAGGAGACCATGCTGAAGCGGATCCGCTCCGA
CAAACAGGAGCTGAAGCAGCGGTTCGGCTACGTCAAGCTGCAGGTAACAT
GATATTCTCATTTTTCAGACCGTTATAAATGGGCAGTATAAACTTAGGGA
CAGAGGAATAATGGGTATTATTGTTGTGCAGAAAAGAAAGTTGGGCAAGA
GACAATACACAGTTATGACTACAATTACACTAAAGTTAAAGCTGGTGTTT
CAGGCAATAATGGATATTTAGAAGAACATTGGATTCAAGCTATTCTCCTT
ATATAGGAGCATAGGGGTCGTGCTTTTTTACTTATTATGTGCTGTATTTT
AGGTGGTGTATTAGTTCTGAATGTACCCCGTTTCTCACGGTAGTCAGCCT
CCCATGTTGACTTACAATCAGAAAATATATGATCCCTCCCCCAAGCAAAA
CCCGTACAATGAGCCTGCTAAGAAGTCTAAGAAGTGTTTATCTTAAGAAA
TAACGTAACGTGATAGGGACAGTCACGAAGTGTGTACTTCATGTTCACAC
TAACTTAAATGGCATCCTGTCTATGTTACAGATGATGAACGTGCCGTACC
GGGATGACATTGCCGAAGAGATCGGAGTCAAACCATCATTTTGGAGGCTC
CTTCCTCGGGACCCAAAATTAGCTTTCCTCTGCTACTTCGGCCCCGCCTT
CTCTGTCCAGTACCGCCTGCTGGGGCCGCATCCCTGGTCAGGTGCAGCCG
GCCACGCCAAGTCAGCCCTGGCCAACACCCTGTACCCCTTCGGGTCACCT
GCTCTGGACAAGGAACAGTCGGGCCTTTCACTGGCCAAAGTTGTCAAGTT
TCTCTTGTTGGTCGGGGTGCTGATGGCGGTGTTTAATCGTTTTATGTAAT
ATCAATCTAAACAAAGATCCCCAATTCCATACTTTGGAATGGTGATGTAT
TCTAGGATTGTTTTGATAAAGTGCTTCCTTGAAATCCCACTAAGGCTGCA
CCAAGTAATTTTTATGGATGACGTCCTTTGGAAACCCTAAATCTAATGCG
AGAGCGCGAAAAAAAAACAAGAAGGGCCGAAAAAACAAGATGCCTAGATT
TGAAAAATCTTGTCAGCAGGAAACATCTGCACTGCTGACAGGATGATCAG
TAGAAAAATTGCACTACTGAGAGGACGATCCTGTCAGCAGTAGAAAAAAT
GCACTGCTGACAGGATGATCCAATTTTTTTTACTGATGACAGGATCATCC
TGACAGTAGGTAGCCACTTCCTTATCTATGCATTTTGCGTGACGAGTTAT
ATGCATTTTGCGTGACGAGTTTTACATTAATCTTACGATTTCCGGCACTG
TCGTAACTCTTTGGTCATAGTTACAGGAAGCGGAATTTCTTGTTTTTTTT
CTGGGTACAGACCAAAATCAATGCGCGCGCGGACGTCATCCATAAAAATT
ACTTGGTGCAGCCTAATGTGAGTTTCACAAGAATCAATATTGTTATTTCA
AATGGAGTCTATGTACCATAGTTCAATGACATGTTGTTGTTTTGCCGCGG
TGTTCCACACTCACGATTTGAAAACAGAGCTAAGGGTTTGGTACTTCATA
TAGTTTATAATGGGTGGATTAGTTACGATAAAATTGAGTAATACGGTTAC
AAATGGAGCTCATTAGACATTCACTACGCAGTGAGTATAGATATAGAGAA
TGTTATGATAAAATGCTATGGAGATCTCGAGAAGATGGGTGAATGCTGTC
TGTAGTTTCAAACGATAGTGACAATGCCTGTTACTGCCTACCTAGACATG
GCAAAAGTTAAACTAAAGTGTAACGTTATAGTGAATAAAATGAAGAACGA
ATATTGCATCCACTCAAAATGTACCAAGATTCTTTTTTTCAATCCGTCTT
GTCAATTTTTACTATTGCAACCGACTGAGTTTAGTAAAGACTAATGAAC

Coding sequence (CDS) from alignment at Sc0000230:38743..43941-

>BlTCONS00113736 ID=BlTCONS00113736|Name=BlTCONS00113736|organism=Branchiostoma lanceolatum|type=CDS|length=906bp|location=Sequence derived from alignment at Sc0000230:38743..43941- (Branchiostoma lanceolatum)
ATGATGCTGCGCCGGGTACTTATGGGCATGCCCGAGGTCATCGTCAACAA
AATCATCAAGGGCGAGGCGAACGCCAGAGTGTGTCATGACAACTACGGGC
TGACGTGTCCGGCGGACCCGCTCAAACACTCCGTCATGGCGAATGACGAG
ATAGGTTTCAGACTGGCCNAGATAGGTTACAGACTGGCCACTGGGCAGGT
CCTCACGAAGCCCCAGCTCTCCCGGTTCACCCAGCACGCTGCCCGGTTCG
CGGACGGCAGTACAGTGGACGGGCTAGACGCCGTGGTATTCGCCACTGGA
TTCAACCTGGCCTTTAACTTCAGTGACAAGTCCATCCTTAATAATAACGC
GGAGGACCTGAACTTGTACAAGTTGGTGTTCCCTGCGGAGCTTACAAAAC
CCACCCTGTCTGTGATCGGCTGCCTGTCTACCATCGGGGCACATCCTCCT
ATCTACGAACTACAGGCTCGCTGGGCCGTCAGGGTGTTCTTGGGTCTGAA
TAAGCTTCCCGATAAGGAGACCATGCTGAAGCGGATCCGCTCCGACAAAC
AGGAGCTGAAGCAGCGGTTCGGCTACGTCAAGCTGCAGATGATGAACGTG
CCGTACCGGGATGACATTGCCGAAGAGATCGGAGTCAAACCATCATTTTG
GAGGCTCCTTCCTCGGGACCCAAAATTAGCTTTCCTCTGCTACTTCGGCC
CCGCCTTCTCTGTCCAGTACCGCCTGCTGGGGCCGCATCCCTGGTCAGGT
GCAGCCGGCCACGCCAAGTCAGCCCTGGCCAACACCCTGTACCCCTTCGG
GTCACCTGCTCTGGACAAGGAACAGTCGGGCCTTTCACTGGCCAAAGTTG
TCAAGTTTCTCTTGTTGGTCGGGGTGCTGATGGCGGTGTTTAATCGTTTT
ATGTAA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113736-exon-Sc0000230-1564993656:43918..43941BlTCONS00113736-exon-Sc0000230-1564993656:43918..43941Branchiostoma lanceolatumexon
BlTCONS00113736-exon-Sc0000230-1564993656:43221..43438BlTCONS00113736-exon-Sc0000230-1564993656:43221..43438Branchiostoma lanceolatumexon
BlTCONS00113736-exon-Sc0000230-1564993656:43006..43119BlTCONS00113736-exon-Sc0000230-1564993656:43006..43119Branchiostoma lanceolatumexon
BlTCONS00113736-exon-Sc0000230-1564993656:42585..42704BlTCONS00113736-exon-Sc0000230-1564993656:42585..42704Branchiostoma lanceolatumexon
BlTCONS00113736-exon-Sc0000230-1564993656:42398..42453BlTCONS00113736-exon-Sc0000230-1564993656:42398..42453Branchiostoma lanceolatumexon
BlTCONS00113736-exon-Sc0000230-1564993656:41782..42048BlTCONS00113736-exon-Sc0000230-1564993656:41782..42048Branchiostoma lanceolatumexon
BlTCONS00113736-exon-Sc0000230-1564993656:41392..41536BlTCONS00113736-exon-Sc0000230-1564993656:41392..41536Branchiostoma lanceolatumexon
BlTCONS00113736-exon-Sc0000230-1564993656:40938..41086BlTCONS00113736-exon-Sc0000230-1564993656:40938..41086Branchiostoma lanceolatumexon
BlTCONS00113736-exon-Sc0000230-1564993656:40599..40694BlTCONS00113736-exon-Sc0000230-1564993656:40599..40694Branchiostoma lanceolatumexon
BlTCONS00113736-exon-Sc0000230-1564993656:38743..40110BlTCONS00113736-exon-Sc0000230-1564993656:38743..40110Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113736BlTCONS00113736-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000230genomeSc0000230:38743..43941 -
Properties
Property NameValue
GeneIDBlCUFF055760