BlTCONS00113727 (mRNA) - B. lanceolatum

Overview


Name	BlTCONS00113727
Unique Name	BlTCONS00113727
Type	mRNA
Organism	Branchiostoma lanceolatum (Amphioxus)

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Sequence

The following sequences are available for this feature:

mRNA from alignment at Sc0000230:3839..11565-
coding sequence from alignment at Sc0000230:3839..11565-

mRNA from alignment at Sc0000230:3839..11565-

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>BlTCONS00113727 ID=BlTCONS00113727|Name=BlTCONS00113727|organism=Branchiostoma lanceolatum|type=mRNA|length=7727bp|location=Sequence derived from alignment at Sc0000230:3839..11565- (Branchiostoma lanceolatum)
CTCCAAACGTGCTTCTAAGAGGTAAGACTCTAGCCACAAAATGGAGAAAA
ACCATCTGAATCCTTACAGCTGGCATGTTGGTAAAAAGAATCAGCGTGAA
ATGTTTACTGTTGCATATTACCCTTGGGATGACCGGCTCTTTAAACAATT
TAATCAGAACAATTAGTCTTCTTCTTTTGGTTGTTTAAATCACTGCTGAT
ATTGAATGACTGACTTGATGTGTAACTGGCCTCCGTTACCAGGTCTCTGA
GACGAGAGGAATCCACACGTGGTTCCACGCGACTCAGGCGTTCCTACAGC
ATTCGCTCCACACATAGTGCGACCAGTGAGACAGCTGGACATATAGAGGA
GCCTCCTGAGATAGAAGATCTGGATGTAGACCCAGAGGATGGGAAGAACC
TGGATGTAGAAACACCAAAGAAAGAAGGGGATGGCCCTAAAGGTGAGTTA
GATGATACTTGATGTAATGATCTTGTAACTGTTGAGACATGTTGTAGTTG
CTATGATTTCAGTATTAATGAATGAATGAATAAAGACCTTTATTGTACAC
ATATATGATATACCCACTGGGTTCAGTACAGGTCACAACAACAGAACAAA
CTAGAGTTCCACAAACACATTATCTTCACCAAATAATCAAGGCTTATTAT
GGAAAGTGATTTATATTTACGTGCCTATCACCCCCTGCAAATTTGATCAT
GCACCATACCATTTGGACGTTATGATTGGGCGAACGAGTCCAGTTAAGAT
AGGGTTAAAATCATTTGGTGGTACAGGACTGTATATGTGTAGAGTGTGCT
GATATATGTTATAACTGGTCATGAAAAAATATGAGTATGTTGATATTATA
TGGGCCACAAAGGTTCGATATGGCAGTGTTGAAAGTTGAAAGTGATGATG
AAATAGTACAGTCAATACATATGAATAGAATAAATCTGGCACGTTTTTAG
GTGTTTCTAGTCAGGCTTTCTATTTTGTCCCTATTTCGTTATGTCGCCAA
CCGTGTTGAACAAAAATGCTTAAACTGAACGCGTCAAAAACCAGCAGGAC
CCACACCTCTGCTTGGAGAATAGTTTATTTATTTGACCTACATGTACGTT
TATGCAAGGCTATCTGTTTACATGACCTGACACTGTCCCATGTCCCATTG
AAAGGCAGTGGGTTAACAAACTTTCCTTACTAATTATGCAAATTAGCTCC
TTATTTGCATAATTAGTCATTGATTATGTAAAGCACCATCCGAGCTCTCT
ACATACCAAACATCACGACGATCTGTCGACCCATTCTCAAGTTATTCATG
TCCGAATGTCAAAACAAAAACACCCACTGCGGTTCTTAACAAGCCGCTAG
GGGGCCAAAATTTACAGAACTTACTTTCTGTGGCATGAACTATCTACCAC
ACAAAAATCATGACCATAGCACTTTCAGAAAATATGCCCCTAAATTTTGA
AGCTCTGCTGCAGTACCTTTGGTACCCGCTAGAAGGCCCATTATCGAACT
TGACCTTCCTTTCGGTAAATCCTACCCATCCACTAAATATCATAAGGATC
CATCAACAGCTTCTTGAGTTATGTTGTCCACAAGAAAATTCACATCCACA
CAAAGCCCGCTGCAGTACCGACGGAAAGTGCCAGGAGAACCATTTTTGAA
CTTGACCTCCGTTTTCACAACATCTACACACCTGCAAAAAATCATGAAGA
TCCATCAACGTTTCCGTCACTTTTTTTGCCTACATACAAACACAAAAAAA
TGCTAAGTCCGCTGCAGTACTATTGAAAAACGCAAGGTAAACCATTTTCG
AACTTGACCTTCCTTTACACAACCACTACACACCTACCAAAAATCATAAA
GATTCATTGAAGTTTTCTTGAGTTATGCTCCTGACATACATTCAGACCCA
CCCAACAGATTTTTCAACCGAAAACATAATCCTCTCCGAGTACAAGTACT
CGGCGAAGATAATAACGTCACAGTTTACAAATATATATAGTATACACTAT
GACAAGCTACATGTAGCACTACTATTATGTTGCTGTTTTTTCCAGCACTA
GTGACTGAAGAGGAGAAGTTCAGGGGCTCTGTGACCTTTAGAACCTACTG
GTCATATATCAAAGCAAGTGGAGGTAAGACAACCTGCTTACTTAATAGAT
AAAAGACATGATGTTGCATGGCTGCATATGATTTTTATGTACATTACACA
TAACTTGTACGTATCATTGGATTGATGTGCATGATCATGATTGGTGTTGC
TTGCTGATCTATGTTTTAAAAATGTACTTTGCATGAAAACTAGTAATGCT
CATCATTTTGCATCTGCAGGTTTGATTGTTTGTTCCTTCACTCTGTTGCT
GTTTCTCCTGAACACTGGCTCGATGGTCTTCAGCAACTGGTGGCTGACGT
TGTGGCTCAATCAAGGAAGTGGCGTAAGTATTGTTTGTTACAAGCCCTGT
TTGTAATGCATTTAAGGACTTAATTAAATGATTTATGGGGTATGTTGCAT
GTCCACAGTGAAATTGTATATTGTAACACTATCTTATATTGTAACGCTAT
CAGTTTAATACTAGGCTTGATATATCTATCAGTCCATCATACCCAGCACT
TAGGGGCAAAGGTTTATGTAGACTGTCAAATAACATACAGGTTAAAATTA
TGAAATGTAATTTTGTCTGTTTGTCCCCTTAAACAGTTATGTCATTCTGG
TGTTTTCCACAGGTGCCATACAATGAGTCTGACCCCAGTACCCTGAACAT
TACTGAAAACCCCAGGCTGAACTTCTACATTCTCATCTATGGCATGTGTC
TTGTAGCTGTCCTGGTGTTGGCATTCATCAAGGGATTCTGCTACGTTAAG
GTAAGACCTAAGTGCTGCAAGACAGCCTTGGACTGAAATAGGTTTCTGCA
TGAGCATGTGGATTTATTTGAAAATATTGTATTTGATATGTGATTATTCA
AGATAATTCAGGTTTCTTATGATAATGGTTTCATGCATCCTGTGTCCCTA
ACTCCCTAACAGCAATTACAGCACTAAGTAGCTATTTCAATAATTGGTAC
TAGGGCAGTTATGTTCCACATTTCTGCATGACTTGTGTAGATATCATAAC
ATTTCTTTGCATTGAAAGTGCATTCTTGTCATGTGTAGGTCACTCTTGGT
GCCTCATCAAGATTGCACAAGTCTGTGTTTGCATCGGTAAGTTTGTACCT
TTCTAGATTGGTATGTATTAACATGGTCAGTATATGGTTGTCTGTACATG
CTTTCAATTAATAGCTTGTTAAAGTCATGAGTTCTCACTGAACGAATGTC
ACGGCTGGTTGATAGTCTGCTTTATAGGACTAAGTCAATATTGCTTGTTT
CAGATTCTCCGTTGTCCGATGAATTTCTTTGATGTGACCCCAACTGGAAG
GATACTCAATCGCTTCTCAAGAGACCTTGATGAAGGTAAGGATTTAACAT
TTTTTTGGTGTAATTTTATTCTTTTCATCAATCAAATTCTGGTCATGCAA
ATAACTGATATTCTTTAAATGTCTTTCTTAATTCAAAGTTGTTAGATGCT
AAGTGCTTCCTCCTGTAAACCAAAACCTCTCTGTTCTCCACAGTTGACGT
TCGCCTGCCCCTCAACATGCAGGTGTATCTGGAAACCCTCTTCATCGTTG
TTGCCTCCATTCTGAACATATGTGTAGTCTTCCCTTGGTTCGTCTTGGCA
CTGGTGCCTCTGGGTATCCTGTTTTTCTTGGCCAACTACTTCTTCAGACA
TGTTATCAGGGAGCTGAAAAGGTGAGACAGGAAATTGTTATGGAAAATCT
ATTATTACTGTCTTTATACATTTAATTTACATTGTTCACACAATTTGCAC
TCCTGTACAGAAGACTTTCAATTTTTTGCTACCTTGCATATTGTGCATGA
GCTACACGTATGCAGAAGGAACCAATAAATTTGTTGCTTACTCACCTATT
ACTATTAGGACTATTGACAATAATTTTTTCTAACATGCCACCTATAATTT
TGATTTTCTGAAAAGTAGTATTCAAGACTTAATATGTTGCTGGAAACTGA
TTTTCCCAACCACAGGTTTGACAACATCATGAGATCTCCATGGTTCTCCC
ACGTGACCGCCTCTATCCAGGGTCTGCACACCATCCATGCCTACCAGCAG
GAGGAGGAGTTTCTGCACAGCTTCATCACACTCCTGGACAAGAACAATGC
TGCCATGTTGATGTATAACATGGGCACGAGGTGGCTGGCTGTCCGCCTGG
ACTCCATGGCTCTTGTCATCAACACAATGGCTGCCGTCATGGTTGTTGTG
TTCCATGGACAAATCCCTGCATCCTTAGCTGGTCTGGCCTTGTCATATGC
CATTCAGGTGAGGGGCCAGCACTATATATCATTACATTAACTATAACATT
CAATAGTATTTGAGCGTACTCTATCTACAGTATAGTACTTGTTAAGTGTT
CAAAATCTCTGTTTTTTGGCCTTTCAGACATCTGGGCTCTTACAGCTGAT
GGTGAGGACAGCATCAGAAACAGAAGCAAGGTTCACTTCAGTTGAGAGAA
TAACTCATTACAGCAATGTAAGTGGATTCTTTTCTGTTCAAACATGCTTG
AAGTTTCTTCTGTATCAACAATGACATCACACTGTGCATCAGAATAGTAG
CTGGGATAGAGTATAGGTTACAAGAGTCTTTTCAATTGGGTTGTGTAAGA
ACATTTAATTTTTAGTTAACAGTCCCTAGGGGCCAACACTTTGGAATGGA
CTCTGTTCATCGAAGACAACTCACCGGGTTGAAGGCTTTCAAAAATGGAC
TGTAGCGAGATATTTCTACTGATGTTTTTAGCTTATTTATAATGTAATAT
GTGTAATACTATGTTCTTATTGTATGTTTACGTGTCCAGGGACACCTGAA
ACACAGGCCGCAGGCCTGAGCTGTGATTTTTCCCTGGTAAAATAAAAATA
AAAATGAAATGAAATGAAAATGCTAAGTGAATTTGATTAGTATTACTGAG
ACTTTTCCATTGTTTATGTGTTTTTCTGATAGAGTCTGGAGGAGGAGGCA
CCTGAAAGGATAAAAGGTGCAGATCCTGCAGAAGGATGGCCAGAGCAAGG
CCAGGTGCAGTTTGATCACTACAAGATGCAATACAGGGACAACCTGCCCT
TGGTGCTGAAAGGCATCCACTGCGACATCCATCCAAACGAGTCCATTGGG
ATTGTTGGCAGGACAGGGTCAGGTAAAACTTGGATTACAGTCTTATACCA
GACTTCTATACAGGTTCCCCTGTTTCTACTCCTGTCATTCATGATCTCAG
AAGTAAAGTTTTTTTCTTCAATATGAACACTTACTTTTCAGACATTCTTT
CAAAGCATCTACTAAGATGGCAATATTTTACTGCTGTCTTATGGTAAGAA
TGAATTCTTGTATCTTGTGTAGGGAAGTCATCCCTCGGCGTAGCCCTGTT
TCGTTTAGTTGAACCAGCAGATGGAGTCATTTCCATTGACGGGGTGGACA
TCAGCAAGATTGGACTGCACTCCCTCCGCAGTAAACTGTCCATCATTCCT
CAGGACCCAGTGCTATTTGTCGGCACAGTTAGGTATGGAAATTTACTTCC
ATATTTGAAGCATATTTAGACATGCCAACACCATTTAAGATAATGCATTT
TGATATTTTTGTCTAAATAAGGTATGTTGTTTTGCCCTAAGTTGGATAAT
AGAAACTTCTGCATGATGATTGTGAAATTAATATAATGCTTATGATTTCC
TTTGTTCTTGAAATAGGTACAACTTGGACCCTTTCAATCAGTACTCAGAT
AACCAGCTGTGGCAAGCTTTGGAGAGGTCTTACATGAAAGACAGGGTATG
TTTTTCCATATCTGGTACCAATCACCAGCATCGATAATTTTAAAGGCTCT
TCCTCTAATGATCTCAAACTTGATTGACAGATGCCATTGCACATACATTT
TTGTCTATCTCGTGCAGGAATAATACCACATCTCAATTGTGAGATGCAGG
CTGTACAAACCAAGACACAGCTTTACAGCATACCTCCATATTTTAATATA
TCACTGAATATGTTTTCTTCTGTAGATCTCAGCTCTTGAGAAACAACTTG
AAGCTCCAGTGATTGAGAATGGTGAGAACTTCTCTGTGGGAGAAAGACAA
CTCATGTGCATGGCTCGAGCCCTGCTGAGGAACAGTAAGGTGTGTTAGTT
ACAGCCACTTCCAGTTTTCTTCATCTGGCTTTGTTACATGTGTCGAGTCA
CCATCAATTTTCTCTAAGATTTGTGAATTACCCAGAAAATTGAGCAACAT
ATAATGCACCAAAAAATGTTAACAACTCATAATACAGTTGTCCTTATTAG
TATATAAGTGCTCAAGCCCTCCCCCTTCCTGCCAAACACAGATAATATTG
CTGGATGAAGCAACTGCTGCCATTGACTCAGAGACAGACAGTCTTATCCA
GAAGACCATCCACGAGGCCTTCACAGACTGTACCATGATGACCATAGCAC
ATCGGCTGAACACAGTCCTCAACTGTGATCGGATCATGGTCATGGATGAT
GGACATGTAAGTATGCTGACTAACTGTTATAAGTTATTAAGATATGATGT
CTTAATTTTTTTGTCAAAAGAAGATACACTTTATTGACAATTAGAACAGC
TTAATTTGTAGAAAACTTGATACGTTTAGTAATGTGGCCGTTCATATTCA
AGTTTAAGCACACTTGTTGGTAAGGGTCTTTGTAGAACATGTTAAGGTGT
AACTCCAGATGCAGGAAGATATTTTCAAAAGTCAAGTCTATTTTCTTCTA
CAAACATCTATCCCAGGTCTAGCTTTATTGTTCAGGAAACAGATGTTGCC
TGATGGCCCACAAAATGCAAGATAATACAGGCTACACTGCAGTATGTAGA
TTTATAACATATTCTCATAGATTTATAACACATTCTCCTTTTTGTGTAAT
TTAGTTGGTGGAGTTTGACACCCCAGCTGCGTTAATGTCCAAGCCGGACT
CCCACTTCAGGGCCATGTTGACAGCCTCTGGCACCGACGTCAGCAGATAT
CTGACTGGGACTGCCCAAACACCTGCCACTCAGGAGGGAGAGGAGTCAGG
GGAAGAGGAGTACGACACCAAACTGTAGAGTTTTTAATGGCACATGTACA
GATAATTAATGATGTAATCAAAGGTTGTAGAATTTCTGTGAAAAGTCTTT
CTGACCAATAGTTCATGGACAAACTTATTCATCTGCAAGTGGGATTTACA
TTTGAGCATCATATACAGTACAATGTTTTGATAGATAAGTACAGAAATTG
AATTTAGGCAACCGTTTTTTATGTTTTTGCTGTTGTTTGTAACAAATGGA
CTTCTGAAATAATTTTGATTGTATACTATGGTGTTTAGACATGGATAAGA
CAAAACACAAGGAAAGTGCAATAAAGTGACCAGATAATGATTCAACAGTG
TACACCAATAATTGTAGCTGTTTTATTGATTTTGATATTGATCAATTGTA
CGCTTGGAGACTTAGTTCATTTTAGTAACATAAGATGATTGTAACACTGA
AGACAGAACTACTATTCCATGTTTTATTCTATTTGCTCAAGAAACATATT
TTAAGTTTATTATGTTACCACTTCAATTTTACTGTTTCTTTTCCTCTACT
GTAGCAAACACATTTCTGTTTACTGTAGTTATTTCTCATTCTTTTTGTTT
GAATAGAACCTTTACTTGAAGTCATGA

Coding sequence (CDS) from alignment at Sc0000230:3839..11565-

>BlTCONS00113727 ID=BlTCONS00113727|Name=BlTCONS00113727|organism=Branchiostoma lanceolatum|type=CDS|length=2064bp|location=Sequence derived from alignment at Sc0000230:3839..11565- (Branchiostoma lanceolatum)
TCCAAACGTGCTTCTAAGAGGTCTCTGAGACGAGAGGAATCCACACGTGG
TTCCACGCGACTCAGGCGTTCCTACAGCATTCGCTCCACACATAGTGCGA
CCAGTGAGACAGCTGGACATATAGAGGAGCCTCCTGAGATAGAAGATCTG
GATGTAGACCCAGAGGATGGGAAGAACCTGGATGTAGAAACACCAAAGAA
AGAAGGGGATGGCCCTAAAGCACTAGTGACTGAAGAGGAGAAGTTCAGGG
GCTCTGTGACCTTTAGAACCTACTGGTCATATATCAAAGCAAGTGGAGGT
TTGATTGTTTGTTCCTTCACTCTGTTGCTGTTTCTCCTGAACACTGGCTC
GATGGTCTTCAGCAACTGGTGGCTGACGTTGTGGCTCAATCAAGGAAGTG
GCGTGCCATACAATGAGTCTGACCCCAGTACCCTGAACATTACTGAAAAC
CCCAGGCTGAACTTCTACATTCTCATCTATGGCATGTGTCTTGTAGCTGT
CCTGGTGTTGGCATTCATCAAGGGATTCTGCTACGTTAAGATTCTCCGTT
GTCCGATGAATTTCTTTGATGTGACCCCAACTGGAAGGATACTCAATCGC
TTCTCAAGAGACCTTGATGAAGTTGACGTTCGCCTGCCCCTCAACATGCA
GGTGTATCTGGAAACCCTCTTCATCGTTGTTGCCTCCATTCTGAACATAT
GTGTAGTCTTCCCTTGGTTCGTCTTGGCACTGGTGCCTCTGGGTATCCTG
TTTTTCTTGGCCAACTACTTCTTCAGACATGTTATCAGGGAGCTGAAAAG
GTTTGACAACATCATGAGATCTCCATGGTTCTCCCACGTGACCGCCTCTA
TCCAGGGTCTGCACACCATCCATGCCTACCAGCAGGAGGAGGAGTTTCTG
CACAGCTTCATCACACTCCTGGACAAGAACAATGCTGCCATGTTGATGTA
TAACATGGGCACGAGGTGGCTGGCTGTCCGCCTGGACTCCATGGCTCTTG
TCATCAACACAATGGCTGCCGTCATGGTTGTTGTGTTCCATGGACAAATC
CCTGCATCCTTAGCTGGTCTGGCCTTGTCATATGCCATTCAGACATCTGG
GCTCTTACAGCTGATGGTGAGGACAGCATCAGAAACAGAAGCAAGGTTCA
CTTCAGTTGAGAGAATAACTCATTACAGCAATAGTCTGGAGGAGGAGGCA
CCTGAAAGGATAAAAGGTGCAGATCCTGCAGAAGGATGGCCAGAGCAAGG
CCAGGTGCAGTTTGATCACTACAAGATGCAATACAGGGACAACCTGCCCT
TGGTGCTGAAAGGCATCCACTGCGACATCCATCCAAACGAGTCCATTGGG
ATTGTTGGCAGGACAGGGTCAGGGAAGTCATCCCTCGGCGTAGCCCTGTT
TCGTTTAGTTGAACCAGCAGATGGAGTCATTTCCATTGACGGGGTGGACA
TCAGCAAGATTGGACTGCACTCCCTCCGCAGTAAACTGTCCATCATTCCT
CAGGACCCAGTGCTATTTGTCGGCACAGTTAGGTACAACTTGGACCCTTT
CAATCAGTACTCAGATAACCAGCTGTGGCAAGCTTTGGAGAGGTCTTACA
TGAAAGACAGGATCTCAGCTCTTGAGAAACAACTTGAAGCTCCAGTGATT
GAGAATGGTGAGAACTTCTCTGTGGGAGAAAGACAACTCATGTGCATGGC
TCGAGCCCTGCTGAGGAACAGTAAGATAATATTGCTGGATGAAGCAACTG
CTGCCATTGACTCAGAGACAGACAGTCTTATCCAGAAGACCATCCACGAG
GCCTTCACAGACTGTACCATGATGACCATAGCACATCGGCTGAACACAGT
CCTCAACTGTGATCGGATCATGGTCATGGATGATGGACATTTGGTGGAGT
TTGACACCCCAGCTGCGTTAATGTCCAAGCCGGACTCCCACTTCAGGGCC
ATGTTGACAGCCTCTGGCACCGACGTCAGCAGATATCTGACTGGGACTGC
CCAAACACCTGCCACTCAGGAGGGAGAGGAGTCAGGGGAAGAGGAGTACG
ACACCAAACTGTAG

Gene-mRNA-Prot

The following exon feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
BlTCONS00113727	BlTCONS00113727-protein	Branchiostoma lanceolatum	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Sc0000230	genome	Sc0000230:3839..11565 -

Properties


Property Name	Value
GeneID	BlCUFF055758

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BlTCONS00113727 (mRNA) - B. lanceolatum