BlTCONS00113674 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113674
Unique NameBlTCONS00113674
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000230:336574..340854+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113674 ID=BlTCONS00113674|Name=BlTCONS00113674|organism=Branchiostoma lanceolatum|type=mRNA|length=4281bp|location=Sequence derived from alignment at Sc0000230:336574..340854+ (Branchiostoma lanceolatum)
AGCAGCCAATCCAGTTGGTGGGCACTACAACAAGGCTAAGACTGTGGCAG
AGAACCTCAAGTATGTCTCTCAGAAATAAGATTTAAGAGTGTCCTTAAGA
GACTATCATAATAACCTTCTACATATTTCAGTAACTGTTATACTTCTGCT
GCAAATGAAAGTGACCTAAGGTAGTACCATATTACTTTTAAGTCCTTGCT
TTTCCTGTCTGGATGATGACCAAGAGGATTTCTGCAACTGTAACAGAAGA
TGTCCTAGAAATGCCAGGTGACGTACATTTGTGAATTGTGTTTTTGTTGT
TCCAGGATGGGTAGTGCCCTGCTGTCTCGGTTTGATCTGGTGTTTATTTT
GCTAGACAATCCTGATGAGGTAATGCAGAGTCAGTTCATCATGTTGTTCA
TTTACCTGTATGCAAGTATGAGCATTACACATGAGAGTATTGGGCAAATA
TATGCATTATAGATACCAGTAGTGTAATGTACAGTAACTGTAATATTACG
TGAGAAATGATTAGTTTAACTTCAACTAGTTTAATTCATGTCAAACTCCA
CATCTCCAAATTCCAAATGATTTTTTCATCAAACTGTATTTTTCAACGGT
GTTTCATTTTGGGTTTTGTGTTTCCTCGGCAAACTTTTGGTTGGAAATTT
TCATTTAATTTTCTTCTGTAATCAGGACTTGGACAGCATGCTGTCTGAAC
ATGTCATGGCACTAAGGGCTGGCAGAGGCCGGTGAGTAACAATTGAACAG
TTGACAACAGTTGGAAAACAACATCATATTCCCATATACTGTTAGGAATC
TACATCTTAGCATTTTTCGCAGTTAAGTTTATTTCACTTGAAAGTAGTTT
CTCCAGAAATTATCACTNTTTATTTCACTTGAAAGTAGTTTCTCCAGACA
TTATCACTTTTCTCCTTTCCTTGCAGAGAAACCTCTGCTGTCAGAGTGAG
AAGAGACACTCAGGTAAACTGAAGATTTTATATACTGTACTGAGAAATTA
GAGTTCCAGGTAAAGACTGTGACTATCATAAGTATAACATTAAGCCTCTA
AAATGCTTCCATATACATATTCCATATGTGCTTTATTCTGTCTGCTTTAG
ACTTTTGAATGAAATACATTGTATTGACATACTTAATGCATCCATGTATG
CTATTTACAGACTCCTGACAATGATGAGGCCAGGAGACAGTGGGAACTAG
AAAAGCCATTGTCTGAACGGCTAAAGGTACAGTTCTGTAAAGGATTTGAG
AAAATGAATGTATGTTCTGTAGATTTGCCCTATACTTATGTGGCAGTAGC
TTATACTATAAGTTATAGCAGACAGTAAATAAAAAGTAAAAAAGACTCTC
ATCAAATAAGAGTAAATGTTCTTCCTCAGAGTATTTGTCTTCCTCTACAA
TTCCTCGAAGAAATAAGGTTGTCATTCTTTCCTGAACAGTTGAAGACTTG
TTCCTGTTCATTCAATACGTATGAAGCCTGTAAGTTTCATACATGTTGAA
ATCAATGGGTCTCTTTATTTCCAGATCAGCAGAGGTGAACAATTTGACCC
CATCCCACACCCACTGCTAAGAAAGGTATACACTCAATCAAACCATACTT
AAAAAGTTTAAGAAATCACCTTTCTAGGTACATGAGCTTAACAGATTTCC
TCTTCCATACTAGTATTTTGCATGTACTCTAAAATCTTGGATATCAAAGA
TTCTGAAAGAAGTAATGATATGAAGTTTAACGTGATGGTCTCAGCCCAAT
TACAGTTTGTCATTTGACATGTTATGTACACATTGCAGTATGTGGCCTAT
GCAAGGAAGTATGTCCATCCCAAACTGTCACCAGAGGCCAAACAGGTGCT
TCAGGTCAGTCGCTCATTAATCCTACAGTCTGCAATTTACGTTAACAAAC
ATACAAGTTTAAAAGATGGGATAATGTCACCCAACAACAGTGCAGACAGT
TATCCTGTCATCTCCTTTTCAGTTTCAGCAGTTTCATGTTAGCAGTTATG
TTACTAGTAGTTTAGTCAATTTCATCAATGATTACAGTTATATGTAGCTA
AACTGTCGAAAATATATTTGCAGACATTCTACCTTGAGCTTAGGAAAGAC
CAGCGAGGCCCAGACAGCATCCCCATCACCACCAGGCAACTGGAGTCCCT
CATCAGACTTACAGAGGTCGCTCCCCTGCTCTTCTGTACCTCATTAACAA
TGACTGACACTTCAAAATGAATCATCATGTGCCGTTATAAGTTGGATATA
GCTTCATCGCTCATGCATACAAGAAGTGATGCACGGTTATTTGAGTTTCT
GCCACAACAATCAAACACATCAAGGACTGCTTTCTTCACATTGTATCCAG
GGCTTGACGTAACAACAGGCAGCCTGAAATGCTTTTTTCTGATGCCCATT
TATGAGCTATTGCAGTATCCAATTTTATCAGACTTTTCCCTCAGAATATA
GCATGCAACTTCTTTTTTGCCATTCAAATTGTGAATATCTGCTGCTATCC
CGGGAAAATTGTCATGAGTTCTTTGTTTTTGAAGTTTTTCTGTAATAATG
TGTCTTTCATGCAGGCTCGTAGCCGTCTCGAGCTGAGGGAGACAGCTACC
AGTCAGGATGCTCAGGATGTGGTGGAAATCATGAAAGACAGGTCAGATAT
TTTGTAATGGAGTGAATCGGAAATGAAATATGCAGATTGGGCCATCACTT
GACTTGCTGGGACTTTCACAAAGGTGATTTGTGCTAAGGGTATGAGATGG
ATGTGTATGTCATCAGGCATAACATAATTATGCAGTATTTAAAAATTGAT
AATCATGTAGACTGAACCATCATTACAAAAAGCATATATTGCTTAACAAA
ATTGACATGCCCAGGATGACAGTGTACGCTATATTAACAAAACAAAATAA
TGGGTGCTATTTGCATAACATTGTTTAATCCATTCAAAACCACATTTTTT
TCTTCAGCATGTTTGACACGTACTCAGATGAATTTGGACAACTGGATTTC
CTCAGATCACAGAATGGGTCAGGCATGAGCTGCAGGAGCAAGGTCAGGTC
AAAGTACATACTGGTTTAATACCTGGCTGTATTTTGTATATATATGTATG
CCAATTGATTTACTTATGACACATTTTATTACACCCTGTAGCTGTTGTTA
TTCAGCTTGTATTAATACAGTACCTGATAAAAGTTTTTGTTCACACCGCA
TGGAGTTTTATGAAGTCTTAATAGTTAATCATAGTTAATCTCAAGTGCAG
GTACTTTGAAATGGTTGTAATTTGTTGGTGTTATGTTTCCGTAGCCGAAG
AGGTTTGTTGCTGCCCTGAATAGAGTAGCAGAACGGACCTACAACAACAT
CTTTACTGTGCAACAGATGAGGGAGATTGCTCAGGTTTGTATTGGGACTT
TGATGAAGTTCAAGCAAGATATTGTAATGTGTCTTTGATTCACCGTTTCC
TCCACATCTTGGGCATCCTGACTGGTAGCTGTCTCCCTCAGCTCCAGACG
GCTACGAGCCTGCATAGAACCCAGACATTATCATGAACAAACTTAACGAT
GAACGAAATCAGAGACCCGATCTTTACCATACATGCAATCTGATGATATG
GCCTAGCCCTTGGATAATGATGAAACATGATAAGCACAGTATCTTGCATT
ACATGCTAGATCTGAACACTTTCTTGTGCAAAATGTGGAGGAGATAGTAG
GAATATATCACTAGAAATAAGTCAATGCGTGTACAGGCACATTTAGCATA
CCTCTTTTCCTCTGCAGAATTGTGATGTGAAGGTTCCAGACTTTGAGGGA
TTCATTGCCTCCCTTAACAACCAAGGGTACCTGCTGAAGAAGGGTTCCAG
AGTGTACCAGCTACAGACTGCTGGGCTCTGAGGGAGGCATCCACCCCACT
CACTCAAGTACAGGGTACAGTCAGCTATCCTGGAGACCTGGGGTTGGATG
TTAACAGCAAGGCGACTTGGACTGAATCAAAACAGAATTTGAGGACTCAG
AAGGAGTGACTGAAAAACAAGGACATACCTAGTAGATAACTGTTGTGTTT
TAAATGTTTGAATCGCCCTGGTTTCACAGAAATCTTGTCTTATATCTCAC
ATGTTTCTATCTCCAGATGGTCTATGTTATGTTGCATGTTTATCAAGTAA
ATTTATATCAGTACTAGCATATCTGGTCATCGATATGCCAGTTTGTTCTA
TGTATTTATTGTACCATAGCATGAAGAAGGAGAATAAAACTGCAACCCGA
GCATCGCATCGGCTTTTTAGCGAATGCCCAC

Coding sequence (CDS) from alignment at Sc0000230:336574..340854+

>BlTCONS00113674 ID=BlTCONS00113674|Name=BlTCONS00113674|organism=Branchiostoma lanceolatum|type=CDS|length=741bp|location=Sequence derived from alignment at Sc0000230:336574..340854+ (Branchiostoma lanceolatum)
ATGAGGGACTTGGACAGCATGCTGTCTGAACATGTCATGGCACTAAGGGC
TGGCAGAGGCCGAGAAACCTCTGCTGTCAGAGTGAGAAGAGACACTCAGA
CTCCTGACAATGATGAGGCCAGGAGACAGTGGGAACTAGAAAAGCCATTG
TCTGAACGGCTAAAGATCAGCAGAGGTGAACAATTTGACCCCATCCCACA
CCCACTGCTAAGAAAGTATGTGGCCTATGCAAGGAAGTATGTCCATCCCA
AACTGTCACCAGAGGCCAAACAGGTGCTTCAGACATTCTACCTTGAGCTT
AGGAAAGACCAGCGAGGCCCAGACAGCATCCCCATCACCACCAGGCAACT
GGAGTCCCTCATCAGACTTACAGAGGCTCGTAGCCGTCTCGAGCTGAGGG
AGACAGCTACCAGTCAGGATGCTCAGGATGTGGTGGAAATCATGAAAGAC
AGCATGTTTGACACGTACTCAGATGAATTTGGACAACTGGATTTCCTCAG
ATCACAGAATGGGTCAGGCATGAGCTGCAGGAGCAAGCCGAAGAGGTTTG
TTGCTGCCCTGAATAGAGTAGCAGAACGGACCTACAACAACATCTTTACT
GTGCAACAGATGAGGGAGATTGCTCAGAATTGTGATGTGAAGGTTCCAGA
CTTTGAGGGATTCATTGCCTCCCTTAACAACCAAGGGTACCTGCTGAAGA
AGGGTTCCAGAGTGTACCAGCTACAGACTGCTGGGCTCTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113674BlTCONS00113674-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113674-exon-Sc0000230-1564993656:336574..336633BlTCONS00113674-exon-Sc0000230-1564993656:336574..336633Branchiostoma lanceolatumexon
BlTCONS00113674-exon-Sc0000230-1564993656:336879..336942BlTCONS00113674-exon-Sc0000230-1564993656:336879..336942Branchiostoma lanceolatumexon
BlTCONS00113674-exon-Sc0000230-1564993656:337248..337304BlTCONS00113674-exon-Sc0000230-1564993656:337248..337304Branchiostoma lanceolatumexon
BlTCONS00113674-exon-Sc0000230-1564993656:337500..337536BlTCONS00113674-exon-Sc0000230-1564993656:337500..337536Branchiostoma lanceolatumexon
BlTCONS00113674-exon-Sc0000230-1564993656:337734..337799BlTCONS00113674-exon-Sc0000230-1564993656:337734..337799Branchiostoma lanceolatumexon
BlTCONS00113674-exon-Sc0000230-1564993656:338098..338148BlTCONS00113674-exon-Sc0000230-1564993656:338098..338148Branchiostoma lanceolatumexon
BlTCONS00113674-exon-Sc0000230-1564993656:338362..338427BlTCONS00113674-exon-Sc0000230-1564993656:338362..338427Branchiostoma lanceolatumexon
BlTCONS00113674-exon-Sc0000230-1564993656:338647..338739BlTCONS00113674-exon-Sc0000230-1564993656:338647..338739Branchiostoma lanceolatumexon
BlTCONS00113674-exon-Sc0000230-1564993656:339138..339214BlTCONS00113674-exon-Sc0000230-1564993656:339138..339214Branchiostoma lanceolatumexon
BlTCONS00113674-exon-Sc0000230-1564993656:339531..339615BlTCONS00113674-exon-Sc0000230-1564993656:339531..339615Branchiostoma lanceolatumexon
BlTCONS00113674-exon-Sc0000230-1564993656:339868..339957BlTCONS00113674-exon-Sc0000230-1564993656:339868..339957Branchiostoma lanceolatumexon
BlTCONS00113674-exon-Sc0000230-1564993656:340341..340854BlTCONS00113674-exon-Sc0000230-1564993656:340341..340854Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000230genomeSc0000230:336574..340854 +
Properties
Property NameValue
GeneIDBlCUFF055746