BlTCONS00113673 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113673
Unique NameBlTCONS00113673
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000230:335855..338145+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113673 ID=BlTCONS00113673|Name=BlTCONS00113673|organism=Branchiostoma lanceolatum|type=mRNA|length=2291bp|location=Sequence derived from alignment at Sc0000230:335855..338145+ (Branchiostoma lanceolatum)
CAGGGTAAAGTGACCAGTTGTCTTCATCTTTTACTGTTATTTCACTACGG
GAACTTAAGTCTTTCTTGTCTGGTATGGCAAACTTTTCATTGAGTCATGC
TGCTGGTGTCAATGAACATTTTCTGTTCCAGGCTGTTGCTGCATTGATGA
ATTTGACAAAATGACCAACCAGCATCAGGCTCTCCTTGAAGCAATGGTAA
TCAACAAGTTTCCTTTCAAATGATAGGCAATATTAAAAGCAAGTATGACA
TACACTTGCCAACTCAGAGGTCTGCTATGTTAAGAAAATTACCTATAACA
GGTTTAATTTTTTTGGATATTATTTATTAAGAATGACTTAACGAACTTCA
AATGAAATACTTATCTAACTCTAAAAGTTATGATGCCCTGACGTAGCCAT
TCTATTTAAATGGAAATAGGCATACTGTTGCATACAAAAGTAGAAAGCTG
TCATGTTAGTCCTATGTGCTTTAAGATGCCCTTCATTGTTGTTTTTGTGT
TACCAGGAGCAGCAAAGCATCAGTCTGGCCAAGGCAGGCATAGTCTGCAG
GTGTGTGCCTGTCCCTACTCATGATAATTCAATATGATTTAGTACAATTC
TATAAGGGACTTCAAGAGTTAGATTTCAAGAAAAGTGTTTGGTTTAGTCA
ATTATTGTGCACTTCTTTAAGATGATCTTTCCCTCTGTCCAGCCTCCCTG
CACGAACGTCCATCCTCGCAGCAGCCAATCCAGTTGGTGGGCACTACAAC
AAGGCTAAGACTGTGGCAGAGAACCTCAAGTATGTCTCTCAGAAATAAGA
TTTAAGAGTGTCCTTAAGAGACTATCATAATAACCTTCTACATATTTCAG
TAACTGTTATACTTCTGCTGCAAATGAAAGTGACCTAAGGTAGTACCATA
TTACTTTTAAGTCCTTGCTTTTCCTGTCTGGATGATGACCAAGAGGATTT
CTGCAACTGTAACAGAAGATGTCCTAGAAATGCCAGGTGACGTACATTTG
TGAATTGTGTTTTTGTTGTTCCAGGATGGGTAGTGCCCTGCTGTCTCGGT
TTGATCTGGTGTTTATTTTGCTAGACAATCCTGATGAGGTAATGCAGAGT
CAGTTCATCATGTTGTTCATTTACCTGTATGCAAGTATGAGCATTACACA
TGAGAGTATTGGGCAAATATATGCATTATAGATACCAGTAGTGTAATGTA
CAGTAACTGTAATATTACGTGAGAAATGATTAGTTTAACTTCAACTAGTT
TAATTCATGTCAAACTCCACATCTCCAAATTCCAAATGATTTTTTCATCA
AACTGTATTTTTCAACGGTGTTTCATTTTGGGTTTTGTGTTTCCTCGGCA
AACTTTTGGTTGGAAATTTTCATTTAATTTTCTTCTGTAATCAGGACTTG
GACAGCATGCTGTCTGAACATGTCATGGCACTAAGGGCTGGCAGAGGCCG
GTGAGTAACAATTGAACAGTTGACAACAGTTGGAAAACAACATCATATTC
CCATATACTGTTAGGAATCTACATCTTAGCATTTTTCGCAGTTAAGTTTA
TTTCACTTGAAAGTAGTTTCTCCAGAAATTATCACTNTTTATTTCACTTG
AAAGTAGTTTCTCCAGACATTATCACTTTTCTCCTTTCCTTGCAGAGAAA
CCTCTGCTGTCAGAGTGAGAAGAGACACTCAGGTAAACTGAAGATTTTAT
ATACTGTACTGAGAAATTAGAGTTCCAGGTAAAGACTGTGACTATCATAA
GTATAACATTAAGCCTCTAAAATGCTTCCATATACATATTCCATATGTGC
TTTATTCTGTCTGCTTTAGACTTTTGAATGAAATACATTGTATTGACATA
CTTAATGCATCCATGTATGCTATTTACAGACTCCTGACAATGATGAGGCC
AGGAGACAGTGGGAACTAGAAAAGCCATTGTCTGAACGGCTAAAGGTACA
GTTCTGTAAAGGATTTGAGAAAATGAATGTATGTTCTGTAGATTTGCCCT
ATACTTATGTGGCAGTAGCTTATACTATAAGTTATAGCAGACAGTAAATA
AAAAGTAAAAAAGACTCTCATCAAATAAGAGTAAATGTTCTTCCTCAGAG
TATTTGTCTTCCTCTACAATTCCTCGAAGAAATAAGGTTGTCATTCTTTC
CTGAACAGTTGAAGACTTGTTCCTGTTCATTCAATACGTATGAAGCCTGT
AAGTTTCATACATGTTGAAATCAATGGGTCTCTTTATTTCCAGATCAGCA
GAGGTGAACAATTTGACCCCATCCCACACCCACTGCTAAGA

Coding sequence (CDS) from alignment at Sc0000230:335855..338145+

>BlTCONS00113673 ID=BlTCONS00113673|Name=BlTCONS00113673|organism=Branchiostoma lanceolatum|type=CDS|length=471bp|location=Sequence derived from alignment at Sc0000230:335855..338145+ (Branchiostoma lanceolatum)
AGGGGCTGTTGCTGCATTGATGAATTTGACAAAATGACCAACCAGCATCA
GGCTCTCCTTGAAGCAATGGAGCAGCAAAGCATCAGTCTGGCCAAGGCAG
GCATAGTCTGCAGCCTCCCTGCACGAACGTCCATCCTCGCAGCAGCCAAT
CCAGTTGGTGGGCACTACAACAAGGCTAAGACTGTGGCAGAGAACCTCAA
GATGGGTAGTGCCCTGCTGTCTCGGTTTGATCTGGTGTTTATTTTGCTAG
ACAATCCTGATGAGGACTTGGACAGCATGCTGTCTGAACATGTCATGGCA
CTAAGGGCTGGCAGAGGCCGAGAAACCTCTGCTGTCAGAGTGAGAAGAGA
CACTCAGACTCCTGACAATGATGAGGCCAGGAGACAGTGGGAACTAGAAA
AGCCATTGTCTGAACGGCTAAAGATCAGCAGAGGTGAACAATTTGACCCC
ATCCCACACCCACTGCTAAGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113673-exon-Sc0000230-1564993656:335855..335858BlTCONS00113673-exon-Sc0000230-1564993656:335855..335858Branchiostoma lanceolatumexon
BlTCONS00113673-exon-Sc0000230-1564993656:335985..336050BlTCONS00113673-exon-Sc0000230-1564993656:335985..336050Branchiostoma lanceolatumexon
BlTCONS00113673-exon-Sc0000230-1564993656:336361..336404BlTCONS00113673-exon-Sc0000230-1564993656:336361..336404Branchiostoma lanceolatumexon
BlTCONS00113673-exon-Sc0000230-1564993656:336547..336633BlTCONS00113673-exon-Sc0000230-1564993656:336547..336633Branchiostoma lanceolatumexon
BlTCONS00113673-exon-Sc0000230-1564993656:336879..336942BlTCONS00113673-exon-Sc0000230-1564993656:336879..336942Branchiostoma lanceolatumexon
BlTCONS00113673-exon-Sc0000230-1564993656:337249..337304BlTCONS00113673-exon-Sc0000230-1564993656:337249..337304Branchiostoma lanceolatumexon
BlTCONS00113673-exon-Sc0000230-1564993656:337500..337536BlTCONS00113673-exon-Sc0000230-1564993656:337500..337536Branchiostoma lanceolatumexon
BlTCONS00113673-exon-Sc0000230-1564993656:337734..337799BlTCONS00113673-exon-Sc0000230-1564993656:337734..337799Branchiostoma lanceolatumexon
BlTCONS00113673-exon-Sc0000230-1564993656:338098..338145BlTCONS00113673-exon-Sc0000230-1564993656:338098..338145Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113673BlTCONS00113673-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000230genomeSc0000230:335855..338145 +
Properties
Property NameValue
GeneIDBlCUFF055746