BlTCONS00113648 (mRNA) - B. lanceolatum

Overview


Name	BlTCONS00113648
Unique Name	BlTCONS00113648
Type	mRNA
Organism	Branchiostoma lanceolatum (Amphioxus)

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Sequence

The following sequences are available for this feature:

mRNA from alignment at Sc0000230:207090..214843+
coding sequence from alignment at Sc0000230:207090..214843+

mRNA from alignment at Sc0000230:207090..214843+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BlTCONS00113648 ID=BlTCONS00113648|Name=BlTCONS00113648|organism=Branchiostoma lanceolatum|type=mRNA|length=7754bp|location=Sequence derived from alignment at Sc0000230:207090..214843+ (Branchiostoma lanceolatum)
CAGGTATGGAGGAGGCTGTAGACCAGTTTTCTATACTTGATCCTGCTAAA
GGATGCCTTTTGTTTGTAACTATATAGTGCAATGGTAGTTGTTGGTACAT
GTAAGTGCACTCTCCTGTGGCTTTTATTTAAAGTGTTCCTATTAAAAAGC
AGATTGTAGGATGACCAGACAGTAGAACATGATCATGAAGTAAACAATGG
ATTTCAGGCCTCAAAATTAACTTTTTTCCCTACTGTCCCAGCATTGTCCC
AAAAATAAATTTCAACTGTCCCGAAGTGAGGATGGACTGTCCCAACCCTA
TTTTCAGAAATTATGTATTACAACAACTGTAAAGCTCAGTCAGAGTACAG
TATTGCTGTGTAAGCTTATTGTCCATTGAAATAATCAACTCAGATTCAAA
CTTATCTTGTTTTTTTTATTAGACAACAACAAATTTATTACATTATATCT
TATGGATAGTAGTGCAACGTCCACTGCACATTTACAGGTAGACCACTTGC
TGCAGTGCCTTATCATGTAACAAGTGGCAAGTGGGAACTGGGAACTTCAA
AAAGTCATTTTAAGAACATAATCTTTTTCTGAAAATAAACAGTACATAGT
GAGTCACTGAGTGACACTAGTCTAGTACATTTACAGGGACCACTTGTACT
TTATCAGTGGTAGTTAGGGAAGAAAAGAATGAAATATTCTTCAGATTGTC
TCTTTTATTGGTACACAGTGTAACAACAATAGATAGTACACTAGTCTAGT
ACAGTCAAACGTGTCTAAGAAGACCACCCAGGGGACCGATAGAATTCGGG
CGTCTTGGACACGTGGTCTTCTTACAAATAGAGATTGACATTAGTCAAGA
CAGAGGCACCGATTTCAACGTCATGATTTATTAACAAGAATGCTAAACAA
GATGCACTTAATCGTTTAACAGCAAAGCTCGTCTCCATTATACCGCTTTC
GGATTCCACATTTACGATATTTCTTCCAAATTTTCCTGGATTATTTTGCT
AAAATTCATGAAAATTCGCTTATTTTTGTGGCGAGCGGCGTCACTTTTAC
CATCGGCATTGTCTGTAAAAACTTGTGAATGGAGTCGATACCGCATAACA
ATGGGTCATTTCGCTACAACGCTAACGTTAAAAACAAAGGATCGATGTTT
TGGGTTGAGTATCCGACACCCTACTGACGTTTTAAAATACAATTTTCATG
TAAACAACACCAACTGCATCTGTTTACACCGTGAGTAGGTCAGAAAATAA
GTTTACTGGCGAGTGTTGGCGAAAATTCTTACCGGGCACATGGTCGCCAC
AAGCGGGAACCTTCTTTCACAAAATCGGCGACGCCGCAGATTACCGGATC
ATTATGGCATTGTTACCCATGTAAAGATCGTGTATGGTTAAGTTTTTCTC
CTAGTGTGAGTTTTAAACTCCCAAACCCGCCCAAACACCAGAAATTTGCA
GAGAAATACAAAAATATAGCCTCTAGCGTGCCTGTACATGTAGAAACGCA
TTGTTCATTTAGTTAGGATACTTCACTAGAGGCATGGGTGAGCAGTTACA
AAAAAAAAAAATCCACGTATTATCTTCAAAACAAAATGTTATCAAGTCAA
GCTTTCTTTATGTATATATTTTCTTTATATAAAGAATGTTTTTGACGAAA
TAAGTTTAAATTTTGAATGTAGAGTAAAATCACACCACACGCAATAGTTC
CACCCACATTGCAGTAGACTATCCCAATGACCTATGACCACTGGCGCCAT
CTTGGATTTCATCGCTGCAAAACAGGCCGATTTACCGTGATTTCCCGCAA
CTTACCATTAAAAACTGACGTCGCCACACATTTGAAAATGACGTGGTCGT
CTTAGATTACGTTTTGGTCGCTTGCGGTCCGGATCCGGTCTACCGCGGGG
AGATCGGACAGTCTGATGTTGATTAGTTGATTATTTTCCTATTGTCCCAA
AAGTGTCCCAAATAGATTTTTCAGTTGTCCCGGCCTAAATTTTAGTGGCC
CCGGGACATCGGGACATGGTTAAGATCGAGCCCTGGTTGTTCTCATACTA
CAGAATCCTGACAGCAGAGGGTTCATGGCTAGGGCAGAGCTGCAGAGGGA
GGCCCAACCTCTGTGTGACAAGTCATTTACCCTGGTAAGCACATGGGCTT
TTCTGTTTGTAAATTACCAAAAATTCTGGTGAGTTGTTTTTTTAGTTGGA
GAACAGTTTAATTTGTAATTATACATAAAGTGTTTGTTGATTTGCTTTAG
TGTTGAGGATAGTATTTTACATCACAGGGCATTCATGTATTGATACATGT
AGTACTGCAGTTTAAATGGGTACAAGACAAGAGTCTGAAACTAGCTATCT
CATACCATTCTTCAGCCAGACCCTGGCAGCCACTATACAGCATGGTCTTC
AATGGGTGGACTTGTGAAGAAGGGACTGGTCATCAAGGACAGCAACCCTG
CCAAGTATGTACTAACCTTCATATCTTTAAGACTTTATGGTAAACTTTAT
ATTATAAAATGCACAAAAGTACTTCATTTTCCTATTCAAGGATTCATTTA
TGTTGAAAGCCATTGAGGTTTAGTAAAACAAATCTTTATGTGCTTAGATG
AGCCTAAGTTACAAAGGTAATTTGCATGTAGTTTAAAGTTGATTTAAAAT
GAATATTTGTTGCAATTTCTGTCACCCAGATATTACATCACAGACAAAGG
AAGTGAGCTGGCCCATAAGTTAGAGCTGATTGGTGAGCAGGGAGTGAGTG
GGTCCAGCCCACAGGAAGACAGTGAGGACATGGCTTTTACCCTGACAGGA
CCAGGGAATGCCGCACTAACAGCTGGCCTTCATGCTGGAAGGTACATTGT
GTGTTAGGCATCAGCTTCTGATGGGCACCTACCGTACCTTTACTGATAAA
GTGATTCGGAAACACTGCTCATTGAAACTTACTATACATGGTCTTTGTCT
TGTCTTTCCAGAGACTGAAAGTCATTTCTGTTTGCGGGACTTAATTTCAC
AATAGTAGAAGAAAGTTTTGGTTTTCTCAGTGTATTTAGTCTGTGGTTGA
CACAATTTTGTAGTACAGTAGTGATACAATGAAATTGCATATTGGGCATA
CATGTGTATTTGCAGTGTTATTTTGCAGAGAGGGAGACGTCACCACGGAN
GTGTCATTTTGCAGAGAGGGAGCCGTCACCACGGAAATTTAACTACTAGT
ACCACAGGCATTTCAAGATTGACACTAATTTGTGAACACATCTGTATAAT
ACCTGTAACACTGGTGTCAGCCGCTCTGACCATGTATTGACTTTTACTTG
ACAGGACAGAGAGTTGTATAGATGTGACATCTTTGCCAGCTATGGATGTT
AGTCCTAACATGAGGAGAGATGTTGGTCAGGCTGCCAGGGAGACTGTCGT
GTCTGAGATGGAAACTGATGGTGAGGGCCCAATTTTGTATGAGCTTAGCT
GTATCCATGATGCATTTGTAATATGGACACTGGAAGGTTTTAATTTTTTT
GTTCATAAGTCTGAAAATTACTCTGAATATATTTATACTAAAAAGTTTTC
CAGGACAGATTAATTTGATAAGATTGACTTTTATGAACCTTGGAAACTGT
CTGATAATCTAAGACCAAATGTAAGGGTTGATTCTCACTGGATCACTCAC
CTGTGTCTGCACTTTGATAGCATCCTTTTCAGTAAGCCCATCATCATTCT
CTCCATCTTTATTCACAGAATCACAAGGAAGTGTCACAAGTAGATATAAA
GATGACAGTAAATCAAGGCAGCCCCTGTTCACTCTCTCTCCAGGTCAGTG
GAGTTGTGTCTTCTTTATGGTCTTCTTTCAATATTTTTGCTTTGTAGTGG
GTTTATATCTATGTAGCTGCTGACAGTTCACAAATCCACCTTTGTTTATA
TTTGTACTATGCCTCTTGTAGGTGAGTTTGAGGTGGTGTTGTGTGTGGAC
ACTCAGGAGACCACTGGAGGGTAAGCAATGCTTAAAGTCATCCTCTATTG
TACCAACTTAGTCACCATTCACACATTTCAAAGCTGTCTATAGAGTAAGT
ACGGGGCCACTGTATTCCTTTAAAAAGCATGGCTTTCTCTTCCTAGTCGG
GAGACTACAGCTATCATTTCAGAAAACAAGCTAGTCTGACCATCTGACAA
CAGGATGAGTGTACAGAACTTACAAGTCAGTTGTTTCCACAGTGCTGCAG
GCAGCAGGAAGGTGAACCTGGTGCCAGAGCTGCAGAAGAACAGTGTGAGG
TGTGATGTGAGGAATCTGCACGTCGGAGACTTCCTCTGGGTGGCCCGGGA
GAAAGTCAAACGTCTGCCAGGTCAGAGATTTAGGGTTTACGGTGCTTTAA
ATAAAGCAAACTGATGTGAAATTCTGAAGTTTTTACATTGTGTGAGTGGA
ATAATTCTGGAGATGTTTGGAATTCTTGTCTGTCGTGTCAACACAGGCCA
ACTCCATCCACCCTTACCCAGAGAGCTGGTCCTGGACTATGTGGTAGAGC
GGAAGAGAATGGATGATCTTGCGAGCAGTATCAAGGGTAGCAGATTCAAG
GAGCAAAAGGTGACAAATAAAGACAAACCTAATCCTGTCAAGTTTACGTC
TCCTTAAGCAGTACCATGCATTAGACACAATATCATCAACTAGGGGTATT
GTTATCCAGCTGGACAAAAATATGATTGAGACCATATTGAGAAATGCTAC
ACTAGTATTAGTGCAAGATGCTCATTTTGCCGACAACATGTCAGTTTCCC
ATTTGTTCTGATTGTGCAGTTCCGACTGAAGATGAGTGGACTGAGGAAAC
CCATCTACCTGGTGGAAGACTTTGGCTCATCAGCAGCACACTTCTGTCTT
CCTGAAGCGACTCTACAACAAGCAGTAGTTAACACTCAGGTTTGGATCCA
TTTATGTAGTCATAAATGTTTGATGTTTAATTTTTAAGATACTGGGTCAC
TGAGTAATAAGTGGAGCACTATGCTGGAAGGAATGGCTGGCAACAGAGCA
TTTTTCAAAGGATTGTTATGTTTTAGTCTAGAGGTTGCAAACCTATGTCC
ATGTACACTCAACTGCTCACTTCATGTCCTAGTAAGTGTCATGTTTTTCA
TGGATTAACTTTAGGACAGCTTACATATCTTAGATATATGGAACTGTAGT
TATGTACCATCCATACTGTGTACCTTGTACAATTGTTGCGCAATAAAGTT
ATCTTATCTTCAGTTCCCGTGATTGTTTCAGGTGACCGATGGTTTCTTTG
TGAAGAGGACAGCAGACATGAAGGAGTCTGTCACCTACCTCACATTGATG
ACTCATTATCTGCAGAGCCTCTATGCTGTAAGTTACACTTCCTATGTAAC
AAATGTATCAAGACTGTCTCCAGGACCCGTCTCTTCATCCCAGGACGGAA
ATTAGTTTGTTGGGACAAAATCATTTCAACCTGTCCATCAAAAAAAATCT
AAACTTCATGACATGAGATTGATGAAAATGTATTTTTATAAGCTCAAAAT
GGCAGATTTGACAACAAAAATTAACAACATGACACATGGGCTCTGATTCC
AAACAATGGGACAGACAAAAATTTAAAGCTGGAGACAGCCCTAAAGTGTG
TGTTGAAATTGAATGCCCTTCAATTTTGTATTAGGTCTTATCTTCAACTA
TTTCATTAAACTATCATTGTACTGTTGATTCCTGGTTGAAGGGGAAGACC
CTTGAGGGCTACAGCCGGGAAGATCTGCAGGATCAGTCATCAGACCTGAA
CCTCAATGCCAGTGTGATCAAACTGCTGACTTTTCCTGAATTCAATGAGA
CATCAGTAAAGAACAAGGTAAGGAATTGTTTTAGAAATGGTTCCTGCAAC
TTGAAATGTTGATGGTTTTATTGTTTCATGACAAGTTTCACAAAACCAAT
CCCCTTCACATAATTACCAAGACGAAATAAAAAAGCTCTTTAAAAGGGTT
GTCACTTCCAGGTTTTGCTACAGTTATTCTAATAAGAAAAACAGAACTGG
CTTCAGCTTGGGCTTTATTTTTAGGAAAAGAGACCTGTACAGTACCCAAG
GAAGAGACTGATCAAATGTGGGAGAAGGTAAAAATTGCACAAATATTTCA
AGTCAGAAGCCTAATCTCAACATGGCATTCTGCTGGACTTTTAGCAAAGC
TTTAAGTCAGGCAATACAGCTCAAAGCTGTGGCCACTGCAGGTTAGCATT
GCTTAATCTGCAGCTTTGTGGCATGTGACAATCACATCAGGTTGATGCCA
GACCTTGTTCACCAGGTGATCTCTGTGAAGGAGATGTTTGCCAAGCAGCT
GATGCAGTTCCATGGCATGTCCAAGGAAAAGGTGGCAGCAGTGGTCAACA
CATACCCTACTCCTGTGGCGTACGTATATATGATAAGGATATATGCTAGT
TTGTACCATATCTTATGACTCTTTATGAATGATTTAATCAAAGTGTATGA
ATGTGGTTTCCTTGCATTTGATACAGAGCTGTCTCTAGCTTTAAATTATT
TTCTGCCCCACTCATTGTTTGGGAGCCCATGTTGTTAATTTTCCTTGTCA
TTTTAAGCTTAGGAAAATACATTTCATCAGTTTCATGTCACACAGTTCAA
ATCTTTTGGACCGTTGGGTTGAAATTTATGTCCAGTCCAATAGGTAAATT
TACATCCCGGGTCTAAGGAACAGATCCTAGAGACAGCCCTGATTTGATAA
TTTGATGTTATTTCATTTTTTTCCCAACTTGTTTTCTCACCAGCCTGTTG
CAGTTATACTCCAGGTGTGGTTCAGCTGCCGAGAGGGAAAGGATGCTGGC
ACCCCTCAAGTATGGGCCCACTAAAAGGTGATGACATTCAAAAGTATCTG
CTGGGGTCTTCCTGTAACTAGCCGTTTTGTATTTGTTCTAAAGATAAGAT
TGCAATGTTTTACCAGAAATTTCTTGTGTTGGCAGGAATCTCGGACCAGC
TCTCAGCAAAGCAGTGTTCCAGCTATACTGCAGCACTTCAAACCTACAGT
GACCTCCACAGTTCAGCAGAATGAGACAACGGTAACATTACAGATGTGTA
ACATTACAGATGTGTAACATTACAGATGTGTAACATTACAGATGTGTAAC
ATTACAGATGTGTAACATTACAGATGTGTAACATTACAGATGTGACATCA
AGCCTGTGTGGTTATCAGGTACCCATAGGCCTGTCGAAACATCTGAGACA
TTTAAATCATGGTCAGAAAGCGACTTTGTTGTGGTTGAAGCTGTTTGAAT
GAGGCAATAATAACAGTCTTGCTACTCAGAGATTTCATTCTCATATATGT
ATCTTTGAATACAAACCATGACAAAGGAGACAAGGAAATAACTTTAAAGG
GATAGATGTATTTATGCCTTTTGAAGGCACTTCAGAACTCTTAATACAAC
CGCAAGTGTACAGCAGAAGAGTACATATGTAAGTGTTAACTAACACTTAT
ATGCGTACATGTATGTCAATGGTAACTAAACTGTTATGTCAGGAAAACAT
AGACTTTTCAGTTACAATCATGAAAGTATCCTCTATAATTACGTGTAGTT
ATGTGGTCTAGATCTTTGGTAGAAGAGCTACGAGGCACCTATCATCATTA
CTTTTTCTTCAGTGAGAAAAGACTAATGTTGCAGAACAAAGTGTGATATA
CATGTACTTATATGTTAAGTATTTCTTGCCACATTCAACTTATACTCTCA
GGAAAAATAAAGAACTAATCTTTCCTTCACCACCCTTTTATTTTTGCAAC
TGTC

Coding sequence (CDS) from alignment at Sc0000230:207090..214843+

>BlTCONS00113648 ID=BlTCONS00113648|Name=BlTCONS00113648|organism=Branchiostoma lanceolatum|type=CDS|length=1413bp|location=Sequence derived from alignment at Sc0000230:207090..214843+ (Branchiostoma lanceolatum)
AGGAATCCTGACAGCAGAGGGTTCATGGCTAGGGCAGAGCTGCAGAGGGA
GGCCCAACCTCTGTGTGACAAGTCATTTACCCTGCCAGACCCTGGCAGCC
ACTATACAGCATGGTCTTCAATGGGTGGACTTGTGAAGAAGGGACTGGTC
ATCAAGGACAGCAACCCTGCCAAATATTACATCACAGACAAAGGAAGTGA
GCTGGCCCATAAGTTAGAGCTGATTGGTGAGCAGGGAGTGAGTGGGTCCA
GCCCACAGGAAGACAGTGAGGACATGGCTTTTACCCTGACAGGACCAGGG
AATGCCGCACTAACAGCTGGCCTTCATGCTGGAAGGACAGAGAGTTGTAT
AGATGTGACATCTTTGCCAGCTATGGATGTTAGTCCTAACATGAGGAGAG
ATGTTGGTCAGGCTGCCAGGGAGACTGTCGTGTCTGAGATGGAAACTGAT
GAATCACAAGGAAGTGTCACAAGTAGATATAAAGATGACAGTAAATCAAG
GCAGCCCCTGTTCACTCTCTCTCCAGGTGAGTTTGAGGTGGTGTTGTGTG
TGGACACTCAGGAGACCACTGGAGGTGCTGCAGGCAGCAGGAAGGTGAAC
CTGGTGCCAGAGCTGCAGAAGAACAGTGTGAGGTGTGATGTGAGGAATCT
GCACGTCGGAGACTTCCTCTGGGTGGCCCGGGAGAAAGTCAAACGTCTGC
CAGGCCAACTCCATCCACCCTTACCCAGAGAGCTGGTCCTGGACTATGTG
GTAGAGCGGAAGAGAATGGATGATCTTGCGAGCAGTATCAAGGGTAGCAG
ATTCAAGGAGCAAAAGTTCCGACTGAAGATGAGTGGACTGAGGAAACCCA
TCTACCTGGTGGAAGACTTTGGCTCATCAGCAGCACACTTCTGTCTTCCT
GAAGCGACTCTACAACAAGCAGTAGTTAACACTCAGGTGACCGATGGTTT
CTTTGTGAAGAGGACAGCAGACATGAAGGAGTCTGTCACCTACCTCACAT
TGATGACTCATTATCTGCAGAGCCTCTATGCTGGGAAGACCCTTGAGGGC
TACAGCCGGGAAGATCTGCAGGATCAGTCATCAGACCTGAACCTCAATGC
CAGTGTGATCAAACTGCTGACTTTTCCTGAATTCAATGAGACATCAGTAA
AGAACAAGGTGATCTCTGTGAAGGAGATGTTTGCCAAGCAGCTGATGCAG
TTCCATGGCATGTCCAAGGAAAAGGTGGCAGCAGTGGTCAACACATACCC
TACTCCTGTGGCCCTGTTGCAGTTATACTCCAGGTGTGGTTCAGCTGCCG
AGAGGGAAAGGATGCTGGCACCCCTCAAGTATGGGCCCACTAAAAGGAAT
CTCGGACCAGCTCTCAGCAAAGCAGTGTTCCAGCTATACTGCAGCACTTC
AAACCTACAGTGA

Gene-mRNA-Prot

The following exon feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
BlTCONS00113648	BlTCONS00113648-protein	Branchiostoma lanceolatum	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Sc0000230	genome	Sc0000230:207090..214843 +

Properties


Property Name	Value
GeneID	BlCUFF055741

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BlTCONS00113648 (mRNA) - B. lanceolatum