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Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000230:155965..162581+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00113639 ID=BlTCONS00113639|Name=BlTCONS00113639|organism=Branchiostoma lanceolatum|type=mRNA|length=6617bp|location=Sequence derived from alignment at Sc0000230:155965..162581+ (Branchiostoma lanceolatum)
CAGCGGGAGATGGAACGGAGGATCGTGGCTCAACTTCTCACCTGTATGGA
CGGTCAGTCTCTCCACCTTTACTCCTCCCCTGTTGTTATATGATTGTGTA
TGTGGAATAATCAATTGTAACTAAATGATAAAAGTAGAGACAAGATTGTA
CATCTTCACACTATGATATACTAACTGCAGTCCCTGATGTGTTGTTGCAC
AGATCTGAGTGCCAACATCAGTGCCCATGTTCTGGTAATTGGAGCCACCA
ACAGACCTGACTTCCTGGACCCAGCTCTGAGGAGGGCAGGCAGGTTTGAC
AGGGAAATCTGCATGGGCATTCCTGATGAGAGGGCACGGGAGGGGTAAGA
CAACAGGGATTTTCTAGTATCTGGGTACTCCACTACTTGCTACTAGACTG
AAACATTTTGCACAATACATTATCATGACATCCATATACATTTATTATGT
CAGACAGTAGCAACATCTCAGATTTAGAAAAGCCCCTACATGCCAAAGGT
TGTACTGCAGAAGCATCTTATGACAGAAAAGTATTACATGCCAATGGTTG
TCTATTGTACTTTTGAAGCATTTTGTGACATAGAGGTAATGCCCCTTCCC
TGTGTCAGGATTCTGCAGGTTCTGTGCCAGAAACTGCGGCTGTCTGACGG
CTTCAGCTACCGCCAGCTGGCTCACCTGACACCTGGCTATGTGGGGGCTG
ACCTCAATGCCCTGTGCAGAGAGGCAGCCATGACAGCCATTAACAGGTCC
GTGGTGATGTAGGCAGGGGCAATTGGGCTGCTATTAGTCATTAAGAAAGG
ACTGTGTGTGACTCAGTGAGGCTCATTGTTGTGCAATATACCTGAATCAC
ATAAAACACTGAGTTGTCCTGTTCAGTTGTCAGCTGCAGAAGTAATGTTT
ACTGTTTTTAAGAAAGACTCATCAGGTCAAGTGAGAAATCAAGTGAAGAA
TTGTTCCTATATCTCCTTCAAAATTTTAAACTATGTATGGTATGTTGCCT
GAAGTTTCTACTATTTGCAGAAAGACAGTAAGTTTGTCATCCAGCATATG
AAGCAAAGGTTTCAGTGCTGTTGTCTGACTGATTTTACTCTGTCCCAGAA
TTATTATTGAACGTGAAGAGGAAGCAAGAAAAAAGGGCAGTGAGGTGACT
GTTACAGGTGCAGATGTTAATGTGGCACCTGATGCAGGTACTTTACCTTT
GGAAGCGGATTCGGGTACTTTACCTGTGGAAGCGCCTGTACAGACAGCAG
ACACAAGGATATCAGGTAATGAACAGGATTCTGTTTGTTTAAGCTGCATG
TTTGAGATGTAAAGCTGCTATAATTACACATGATTTTGAATGCCATTTTC
ATTTTACAGTTTCCAATGTAAGGAAAAAGGCTTTGCCTCCAATTTATCAA
TGATCTTGGTCAGGAGTAAAAGCTTCATTACTTTCTTCTCCCTTCACATG
ACTCGTACAGTGCTGAGTTGGTTGAAGGATCAGCCTCCACTGACACAGGA
GCAGCTGCAGAACCTCAGTATCCAGATGGAAGACTTCCAGGTCAGAAACA
TCCAATCATTGTAGAATTCTAGAAAAGGTCAATCGTGCAGCCAGCAATGT
TGTTATATTTGTTTACTGTCTTGTCCAGGTCGGGACCAGGTTTTTGACTA
TAGGCTGCAAAACAGTGCTACATGTATTTTCCATTGAACAGTATGTTGTT
TTGTACAGGTTGCCCTTTCCACTATGCAGCCCTCTGCTAAACGAGAAGGG
TTCGCCACCATCCCTGATGTGACCTGGGATGATATTGGTGCCCTACAGGA
CATCAGGGAGGAGCTGACCATGGCCATACTGGTCAGTTCTATGTACACAA
TGGTGTTGAAAGATAGCATAACATGATATATGGTGTATGATATGATATGA
TATGATATGATATGATATAGATAACATAGTTGGAGCTGATATCGTGCATT
GAAATCTAAATCTAAATATTGAAGTAAAAAAGGATTCTTTTTTTATTGTT
TTGCCCCTGGACAATATCACATTGAAAGGTTTTATGATGTTTGCATCAAA
AAACAACGTTCTTTTTGTTCAATTATACAAGGTGTAGAGTGAACCTCACT
CACTCTGTCTGGATACCTGTTGGAGAATCCATTACAAATGTTCTGTGAGC
CAGCGTGTCGTATAATGTTTCTGTGTTGTTTGTGTTCCAGGCACCAGTGA
AGCACAGGGAGAAGTTTGAGTCCCTGGGGCTGGTGAACCCCCCAGGGGTG
CTGCTGGCTGGGCCCCCAGGGTGTGGGAAAACTCTCCTGGCCAAGGCAAT
TGCTAATGAGTCAGGGGTCAACTTCATCTCTGTCAAGGGCCCAGAACTCC
TGAACATGGTAAAGTTTGTCACAGGAACTGTTTCAGCTCTATTTTCTTAT
GGTAACCCTGTCTAGTGGAGAGGAGTAAAATGCTCAGTAAATGATCTGAT
ATGTTACTATTCTTTTATTTGTTATCTCCATGAAAAAAGGCTTTTTCATG
GAGATACTGTTTTGCGTGCGTTTGGTGTTTGTGTGTATGTTTGTGTCACC
GGATGCTTAAAGGAGAATAACTGAAGAAAGGATCGACAGATTGTCATGTT
ATTTGGTACACAGGTAGGTTGGACAGAGATGTACACACTAAAGTGCAAAT
TATGCAAATTCAGTGTGTTTGCGTGTGTGTTTGCGTGTGTGTATGTGTGC
GTCTCCGGATGCTTAAAATCAGCATAACTGAAGAACGTGTAGATGGATTG
TAATGATATTTGGTATGTGGGTAGGTGTTGGGAGGAGAAAGGTCAAGGTC
GATTTTGGGCCCCCTGGTATGTGTCACTGGAACTGCAATGGCGTATTTGT
CAAAATCTTTTAAGGAGAATAACTGAAGAAAGGAGCGACAGATTTTCATG
TTATTTACTATGCAGGTAGCTTAGACAGAGATGTATACAATGAATTGCAA
ATTATGCAAATTGGGCTTAATTTGCATAAGTAATGAGGAAAATCTATATT
TGCAGTGTTGTCCATTGCATTGCCATCTGTTACTTGTAGTAGCTATTGCC
ATCTGTTACTTGTAGTAGCGAAAGTGGGTCACCCCCCAACAGGTTTGGGT
CATACCATTGAGCGATATAGAATGGGGGGAACTGGTTTAATAAAAAAAAC
AAAGTTTCATGGAGATTTTGGGTCCTAAGACTCTTGTTTTGTTTTGCTCT
GCTTTGCTTTGCTTTGGTTGCGTATGCTGATTTTGTTTCTAACTATGACA
TATTTTTTGTGTGCTGCAGTATGTAGGTGAGAGTGAGAGGGCTGTGAGGC
AGGTGTTCCAGAGAGCACGCAACTCGGCACCTTGTGTCATCTTCTTTGAC
GAGCTGGATTCCTTGTGTCCCCGGAGATCTTCTGCTGGGGAGGTGGGAGA
TCTGTACTGTTGTTAACACTGAAAGTGTCAGGCACAATTTAAGTTGCCCT
GCCAATACACAACCATGCATCTTAAGGGATCCAAAATGTATTGCAAATTT
TCATAGCTTGAAAATAAATTATAAAGTAGCTGTTAAGAAACCAAGTTTTT
GCATTGAATAGTGTAATTGAGTCAAACATGCATATGACTTGAAACAAAAC
CTTTTAAATGTATATGCTGCTGTATTTTAAGCTAGAGTGTTGCAGTCAAA
TCGTATTGTTATGTCAAGAAGGTAAATTCAACTTTTTTAATTATTAGCCT
AATAATTAAAAAAGTTGAATTTACCTTCTTGACAAATAGCTATGATACCC
TTTTACTTTGTGTACTAATTCGAAGACATCCTGTTTTGTACAGTCCAGTG
GTGCAGTCAGAGTTGTCAACCAGCTGCTGACCGAGATGGACGGACTGGAG
GCTCGTAAGCAGGTCTTTATCATGGGCGCCACCAATAGGCCAGGTCAGGA
ACTGCAGCTGCATTTCTTTCAAACAGTTCAAGTTTATATTGGCACAAACC
ACACAAACACACAAACTGAGAAATACTAATAGTATATTATTCCTTCATAT
TGAACAACATCTTCTTACGTTGATTAGTACCATACTTTCTTTGTGCAGAT
ATCATAGACCCTGCAGTGCTGCGGCCAGGGAGGCTGGACAAGCTCCTGTT
TGTTGGGCTGCCTAATGAAGTAGACAGGGAAGCTATTCTCAACACTATCA
CAAAGGTCTGTTGTAGCTGGCCTTTTATGAATAATGGTTTCCACCAAGTG
TATCTCTGATTCTGCTACGTATACCTGCCCTCTGAAACATGAATTTATTG
TAGTTTAAAATGCTTGATCGACTCAAAGAAAGGAGTTGTGTTAAATTGTC
TTTGCTTGATCACTGATATCTTCTCAATCTTACTATTACCCATGTTGTCC
CCAAAATGTCAGCATGGCACCAAACCTCCCATTGATGGGGATGTCTGCCT
GGCGTCTATAGCGAGAGATGCTCAGTGTAACAACTTCACGTATGTACTGT
CTTTTGCATATTCTTCACCTTGTATCTAATCATTATCTATCATCCTAAGT
GTTCATCATTGCATAACAGTCACTCTAAAAGCTTGTGGTGTCAGCGTGCT
ACCACAGACAAAATGCATTAGCCTGTAAGCCATGAATGTATTTTTGTTAA
ACTGGTTTACCATTATGTAATACGACATGCCGCCAAAGACTCCAGGAAAG
CACATGAAGTGACCTGTGCCTCAGTTATGTAACAGGCTCCTTTGATGGCA
CGTCTTTGGTCCTAACAAGAGCTTAATTACCTTTCCCCCAAGGAGCAATT
TGCATGATGCAGTTCTCCTTCTGTCAACATCATGATGTTTGGTAAGGCAT
CAACCAGCCAGACTGCCTCTTAGCTTCATTACCTTATTCAATTGAATAGT
GAACTGTGAACATCTCATTAGCCTTCCATTTGATAACTGTTGTTAAAAAC
TGATAGTGTGTTAACTGATAGTGTGTTAAGATTATATTCCACTGTTTAAC
TATCCTCATAGATAATATGAGCTAGTCTAATATCTGTTCACAGCTGTTAC
ATTCTGACAGCGGAATTGTCCCGATGTTGTTCTCCCCCCACAGTGGTGCA
GACCTGGCGGCTCTGGTTCGCGAGGCTGCCATGAGCGCTTTACGAGAGTC
TGTGGTGCTCTCAGGGACAGCGCCTGGCACAGACTTGGTTTCACCTGGTG
ATATCAGGATCAACCTACAACACTTCAACAAGGCATTCCAGAAAGTCAGG
CCTTCTGTTTCAGAAAAGGTGCATGGCCACATGATACATTTTCTTCTTAT
AAGAAAATCTCTGAAAANCTAAAATTGGTAGCAGGGTAATGTAGGTGTTA
TCTTCAGCTGTCAGCTGATGATTTACAGATGGCCACATGCTCGCCAATTG
ACACATAACCCCTTAGGCAGCATGCAGCGCACACTGTGGGGGATTAGTGC
AGGATTCATCAGGCTGAGTTCCAACTGCCGGCCCTGCTCCCCGGAGGATT
TGTAAATGACACATGATTATGAGCAATTGCAGCTTGTCATTGCATTGCCT
CAGCACCTGCCACTGAGCCAGTTTAATTACGTTTTCTAGCATGGTGTGCA
AAGGCAATGGCAATTTGTAATCCTTCACTATCGCAAATTTAGATTGTGGA
TGTTCCAATTTCAAATGTAAACATCAGCTGAATCTACATGTACTACACAT
TACATTTATGACATATCATTCTTTACTTGTAAAAAGTCATGAAAATTTAC
GAGATCTAGATCCCTGGAAGCAAAACATTTAAGCTTTCTAACTGTCAGGT
TCTACTGTAGTTGAGCATAGAAAAATCCTCAGGCATTTGTGCACAAGGAA
CACTAGTCTGCAATGATTATCCGTTTTTTTTCCGGTTGGTCCTTTCTGTT
GAACGTCTGTAATGTTTGTCCTGTTTGTTTATTTTGGTCCTAAGTACGTT
CTTTCTGCCTTGTTCTGCAGGATCGAGCCATGTATGAGAAGATGTGGGTG
AGAATCAGACAGATGGTGTAGGGGACTTCACAAATAAAGATACATTGTCA
AAATTAATAGAGAATAAATGACAGATATATTAACATTTCCTGTACCTTAT
AGTTATTGTGACTCATTTGGCATTGGGGAAACATACTGTAAACCTTTGAA
TGTCCATGGTCGTTTTATTTTTTAGGTTTTCACCTGTCCACCTTGAATTC
ATGACACCACAACTATGCGTTTCTAATCTATTACAGTAACTGCAGAATTG
TTTCAGCCACGCACTAAAGACATTGTGAAAACCTTTTTCCCCTTCTACTG
TGAAATTCAGTCCCTGCAAAAGTAAATGAATTAACAGTAACTGCCATGTA
CCTTATCCATGTTGAAATTAGCAAGTAAAACACTTTCTTTTGGTTGTGCA
ATATTTTAGTACTGATACAAGACAACTACCAGTACTCTAAAATATATGCT
TAATTTCATCCATAGTGCTGTAGTTATGATAGAATAAAAAAATTCACAAC
TGACTAACAAATGTTTGTTTTATTTACATTGGTTTTGTTGTATTTACAAG
GTAATATTACGTGATCCGCGACATGCACGGTAAGGTTATCTGAGATGTAC
ATAATACGAGAGTAAATATTATTCATAGTAGCCCTACATAAAGGCAAAGT
TCATGCATAGTTTCTCC Coding sequence (CDS) from alignment at Sc0000230:155965..162581+ >BlTCONS00113639 ID=BlTCONS00113639|Name=BlTCONS00113639|organism=Branchiostoma lanceolatum|type=CDS|length=1494bp|location=Sequence derived from alignment at Sc0000230:155965..162581+ (Branchiostoma lanceolatum)
CAGCGGGAGATGGAACGGAGGATCGTGGCTCAACTTCTCACCTATCTGAG
TGCCAACATCAGTGCCCATGTTCTGGTAATTGGAGCCACCAACAGACCTG
ACTTCCTGGACCCAGCTCTGAGGAGGGCAGGCAGGTTTGACAGGGAAATC
TGCATGGGCATTCCTGATGAGAGGGCACGGGAGGGGATTCTGCAGGTTCT
GTGCCAGAAACTGCGGCTGTCTGACGGCTTCAGCTACCGCCAGCTGGCTC
ACCTGACACCTGGCTATGTGGGGGCTGACCTCAATGCCCTGTGCAGAGAG
GCAGCCATGACAGCCATTAACAGAATTATTATTGAACGTGAAGAGGAAGC
AAGAAAAAAGGGCAGTGAGGTGACTGTTACAGGTGCAGATGTTAATGTGG
CACCTGATGCAGGTACTTTACCTTTGGAAGCGGATTCGGGTACTTTACCT
GTGGAAGCGCCTGTACAGACAGCAGACACAAGGATATCAGTGCTGAGTTG
GTTGAAGGATCAGCCTCCACTGACACAGGAGCAGCTGCAGAACCTCAGTA
TCCAGATGGAAGACTTCCAGGTTGCCCTTTCCACTATGCAGCCCTCTGCT
AAACGAGAAGGGTTCGCCACCATCCCTGATGTGACCTGGGATGATATTGG
TGCCCTACAGGACATCAGGGAGGAGCTGACCATGGCCATACTGGCACCAG
TGAAGCACAGGGAGAAGTTTGAGTCCCTGGGGCTGGTGAACCCCCCAGGG
GTGCTGCTGGCTGGGCCCCCAGGGTGTGGGAAAACTCTCCTGGCCAAGGC
AATTGCTAATGAGTCAGGGGTCAACTTCATCTCTGTCAAGGGCCCAGAAC
TCCTGAACATGTATGTAGGTGAGAGTGAGAGGGCTGTGAGGCAGGTGTTC
CAGAGAGCACGCAACTCGGCACCTTGTGTCATCTTCTTTGACGAGCTGGA
TTCCTTGTGTCCCCGGAGATCTTCTGCTGGGGAGTCCAGTGGTGCAGTCA
GAGTTGTCAACCAGCTGCTGACCGAGATGGACGGACTGGAGGCTCGTAAG
CAGGTCTTTATCATGGGCGCCACCAATAGGCCAGATATCATAGACCCTGC
AGTGCTGCGGCCAGGGAGGCTGGACAAGCTCCTGTTTGTTGGGCTGCCTA
ATGAAGTAGACAGGGAAGCTATTCTCAACACTATCACAAAGCATGGCACC
AAACCTCCCATTGATGGGGATGTCTGCCTGGCGTCTATAGCGAGAGATGC
TCAGTGTAACAACTTCACTGGTGCAGACCTGGCGGCTCTGGTTCGCGAGG
CTGCCATGAGCGCTTTACGAGAGTCTGTGGTGCTCTCAGGGACAGCGCCT
GGCACAGACTTGGTTTCACCTGGTGATATCAGGATCAACCTACAACACTT
CAACAAGGCATTCCAGAAAGTCAGGCCTTCTGTTTCAGAAAAGGATCGAG
CCATGTATGAGAAGATGTGGGTGAGAATCAGACAGATGGTGTAG
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00113639-exon-Sc0000230-1564993656:155965..156007 | BlTCONS00113639-exon-Sc0000230-1564993656:155965..156007 | Branchiostoma lanceolatum | exon |
| BlTCONS00113639-exon-Sc0000230-1564993656:156167..156308 | BlTCONS00113639-exon-Sc0000230-1564993656:156167..156308 | Branchiostoma lanceolatum | exon |
| BlTCONS00113639-exon-Sc0000230-1564993656:156573..156710 | BlTCONS00113639-exon-Sc0000230-1564993656:156573..156710 | Branchiostoma lanceolatum | exon |
| BlTCONS00113639-exon-Sc0000230-1564993656:157063..157229 | BlTCONS00113639-exon-Sc0000230-1564993656:157063..157229 | Branchiostoma lanceolatum | exon |
| BlTCONS00113639-exon-Sc0000230-1564993656:157425..157504 | BlTCONS00113639-exon-Sc0000230-1564993656:157425..157504 | Branchiostoma lanceolatum | exon |
| BlTCONS00113639-exon-Sc0000230-1564993656:157673..157795 | BlTCONS00113639-exon-Sc0000230-1564993656:157673..157795 | Branchiostoma lanceolatum | exon |
| BlTCONS00113639-exon-Sc0000230-1564993656:158155..158322 | BlTCONS00113639-exon-Sc0000230-1564993656:158155..158322 | Branchiostoma lanceolatum | exon |
| BlTCONS00113639-exon-Sc0000230-1564993656:159234..159356 | BlTCONS00113639-exon-Sc0000230-1564993656:159234..159356 | Branchiostoma lanceolatum | exon |
| BlTCONS00113639-exon-Sc0000230-1564993656:159758..159857 | BlTCONS00113639-exon-Sc0000230-1564993656:159758..159857 | Branchiostoma lanceolatum | exon |
| BlTCONS00113639-exon-Sc0000230-1564993656:160013..160119 | BlTCONS00113639-exon-Sc0000230-1564993656:160013..160119 | Branchiostoma lanceolatum | exon |
| BlTCONS00113639-exon-Sc0000230-1564993656:160327..160403 | BlTCONS00113639-exon-Sc0000230-1564993656:160327..160403 | Branchiostoma lanceolatum | exon |
| BlTCONS00113639-exon-Sc0000230-1564993656:161008..161182 | BlTCONS00113639-exon-Sc0000230-1564993656:161008..161182 | Branchiostoma lanceolatum | exon |
| BlTCONS00113639-exon-Sc0000230-1564993656:161885..162581 | BlTCONS00113639-exon-Sc0000230-1564993656:161885..162581 | Branchiostoma lanceolatum | exon |
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000230 | genome | Sc0000230:155965..162581 + |
Properties
| Property Name | Value |
|---|
| GeneID | BlCUFF055739 |
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