BlTCONS00113638 (mRNA) - B. lanceolatum

Overview


Name	BlTCONS00113638
Unique Name	BlTCONS00113638
Type	mRNA
Organism	Branchiostoma lanceolatum (Amphioxus)

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Sequence

The following sequences are available for this feature:

mRNA from alignment at Sc0000230:154519..162581+
coding sequence from alignment at Sc0000230:154519..162581+

mRNA from alignment at Sc0000230:154519..162581+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BlTCONS00113638 ID=BlTCONS00113638|Name=BlTCONS00113638|organism=Branchiostoma lanceolatum|type=mRNA|length=8063bp|location=Sequence derived from alignment at Sc0000230:154519..162581+ (Branchiostoma lanceolatum)
GAACTCCCAGTTCACTTCTACAAGCAAATGATAAACTTGGTTTATCCACT
GCAAAAGACATTGATGATAAAGATACCAGCAAAGATGTTTCTAAAGATAA
TGTAGACAGGAAGAAAGAATCTACAAGATGGACATATGAGGAAAAAAAGG
CAGATAAAACTCTTCAAGAAGAGGCAACTCCAAAGAGAAAGCTGAAGAGA
AAAGCAGAAGAGGAGACTGATGGAGTTGGGAAGAAAAGGAAAGGAAACGG
TACAAAAGGTACTGGTGGTTGTCTGTTCCTTTCACCGTACGATTTCGTCA
GATAATAAAGCAGAAAGGAGAAGTAGAGTCAGTGTGTTTAGTAAGTGATT
ATGAATGATAAAAGCTCAGTGGATTGACTTTCATTCATGACAATGTCTTA
CCTCTTTCCATGGGATGTGCAGGTCCAGCTGTCCAGAAATCTACAGTCAA
GTTTGCAGACATAGGGGGTATTGAGTCTTGCTTACAGGTGGGTTTATTTT
CCTTCAATAGATAGACTCTTATGTTTAAAGTTTGTCCTTTAGTGTATCCA
GTGTACAAGTGGAAATTTGTTGTCATAGATTGCCCAAAGAAGGTTCCATG
TGTATTAAGTTAAAACCTTATTTTTTAATCCTTTGATATACACATCCAAT
ACACATTGATAATGCAGGGGGCTAGAGTATGGCCATCCTGAATAACATGA
TTTACATAACCCCCCTTATTGTTCTACTGCAGGAGGTGTGTAAGCTGCTG
ATTCACCTGCGCCACCCTGAGGTGTACCAGACGTTAGGAGTCACCCCACC
CCGGGGGTTCCTGCTACATGGACCCCCAGGCTGTGGCAAGACTCTGCTGG
CTAATGCAATAGCTGGGGTAGGAGAAAACTGTCAAGTCTGAACAGCAGAA
CTAGTTTAAAACTTTGAATATGCTGGAAACGGCTAGAGATCTACTTATTA
AAATTCATTCTTTATCAAATTAGGTAGTGAAGAAATTGCAAAGGGCCTAC
ATTTTGATTTGATTTTAACCCTTCCAAATTTTGAGCTTAACTCAAAGGAA
TTCTTGGCAGTTCCTTGTGATATAAAGTGATCATACATGCATACAGTAGT
TATATTCATCTGTGTCTTCTCCGTGTCATGAACAGTTTTCAAGCAAATTT
TGTCCCTCAGGAGCTGGAGCTACCCCTGCTGAAGATTGCTGCCACAGAGA
TTGTATCTGGGGTGTCTGGAGAGTCTGAGGAGAAAGTCAGGGACTTGTTT
GAGAAAGCCGTGGTAAGTGATTTCTACATACCTGTCAGCATGTAGTAGCA
GCACCTCTTGTGGCTTTTTGTCTAACTTCTATACAGTTTTACCATGAGGT
AACCTGTGCTTGTAACTCTTCCATATGCAGGCTAGTGCCCCCTGTATCCT
GTTCATAGATGAGATTGATGCCATCACACCTAAGAGGGAGACAGCCCAGC
GGGAGATGGAACGGAGGATCGTGGCTCAACTTCTCACCTGTATGGACGGT
CAGTCTCTCCACCTTTACTCCTCCCCTGTTGTTATATGATTGTGTATGTG
GAATAATCAATTGTAACTAAATGATAAAAGTAGAGACAAGATTGTACATC
TTCACACTATGATATACTAACTGCAGTCCCTGATGTGTTGTTGCACAGAT
CTGAGTGCCAACATCAGTGCCCATGTTCTGGTAATTGGAGCCACCAACAG
ACCTGACTTCCTGGACCCAGCTCTGAGGAGGGCAGGCAGGTTTGACAGGG
AAATCTGCATGGGCATTCCTGATGAGAGGGCACGGGAGGGGTAAGACAAC
AGGGATTTTCTAGTATCTGGGTACTCCACTACTTGCTACTAGACTGAAAC
ATTTTGCACAATACATTATCATGACATCCATATACATTTATTATGTCAGA
CAGTAGCAACATCTCAGATTTAGAAAAGCCCCTACATGCCAAAGGTTGTA
CTGCAGAAGCATCTTATGACAGAAAAGTATTACATGCCAATGGTTGTCTA
TTGTACTTTTGAAGCATTTTGTGACATAGAGGTAATGCCCCTTCCCTGTG
TCAGGATTCTGCAGGTTCTGTGCCAGAAACTGCGGCTGTCTGACGGCTTC
AGCTACCGCCAGCTGGCTCACCTGACACCTGGCTATGTGGGGGCTGACCT
CAATGCCCTGTGCAGAGAGGCAGCCATGACAGCCATTAACAGGTCCGTGG
TGATGTAGGCAGGGGCAATTGGGCTGCTATTAGTCATTAAGAAAGGACTG
TGTGTGACTCAGTGAGGCTCATTGTTGTGCAATATACCTGAATCACATAA
AACACTGAGTTGTCCTGTTCAGTTGTCAGCTGCAGAAGTAATGTTTACTG
TTTTTAAGAAAGACTCATCAGGTCAAGTGAGAAATCAAGTGAAGAATTGT
TCCTATATCTCCTTCAAAATTTTAAACTATGTATGGTATGTTGCCTGAAG
TTTCTACTATTTGCAGAAAGACAGTAAGTTTGTCATCCAGCATATGAAGC
AAAGGTTTCAGTGCTGTTGTCTGACTGATTTTACTCTGTCCCAGAATTAT
TATTGAACGTGAAGAGGAAGCAAGAAAAAAGGGCAGTGAGGTGACTGTTA
CAGGTGCAGATGTTAATGTGGCACCTGATGCAGGTACTTTACCTTTGGAA
GCGGATTCGGGTACTTTACCTGTGGAAGCGCCTGTACAGACAGCAGACAC
AAGGATATCAGGTAATGAACAGGATTCTGTTTGTTTAAGCTGCATGTTTG
AGATGTAAAGCTGCTATAATTACACATGATTTTGAATGCCATTTTCATTT
TACAGTTTCCAATGTAAGGAAAAAGGCTTTGCCTCCAATTTATCAATGAT
CTTGGTCAGGAGTAAAAGCTTCATTACTTTCTTCTCCCTTCACATGACTC
GTACAGTGCTGAGTTGGTTGAAGGATCAGCCTCCACTGACACAGGAGCAG
CTGCAGAACCTCAGTATCCAGATGGAAGACTTCCAGGTCAGAAACATCCA
ATCATTGTAGAATTCTAGAAAAGGTCAATCGTGCAGCCAGCAATGTTGTT
ATATTTGTTTACTGTCTTGTCCAGGTCGGGACCAGGTTTTTGACTATAGG
CTGCAAAACAGTGCTACATGTATTTTCCATTGAACAGTATGTTGTTTTGT
ACAGGTTGCCCTTTCCACTATGCAGCCCTCTGCTAAACGAGAAGGGTTCG
CCACCATCCCTGATGTGACCTGGGATGATATTGGTGCCCTACAGGACATC
AGGGAGGAGCTGACCATGGCCATACTGGTCAGTTCTATGTACACAATGGT
GTTGAAAGATAGCATAACATGATATATGGTGTATGATATGATATGATATG
ATATGATATGATATAGATAACATAGTTGGAGCTGATATCGTGCATTGAAA
TCTAAATCTAAATATTGAAGTAAAAAAGGATTCTTTTTTTATTGTTTTGC
CCCTGGACAATATCACATTGAAAGGTTTTATGATGTTTGCATCAAAAAAC
AACGTTCTTTTTGTTCAATTATACAAGGTGTAGAGTGAACCTCACTCACT
CTGTCTGGATACCTGTTGGAGAATCCATTACAAATGTTCTGTGAGCCAGC
GTGTCGTATAATGTTTCTGTGTTGTTTGTGTTCCAGGCACCAGTGAAGCA
CAGGGAGAAGTTTGAGTCCCTGGGGCTGGTGAACCCCCCAGGGGTGCTGC
TGGCTGGGCCCCCAGGGTGTGGGAAAACTCTCCTGGCCAAGGCAATTGCT
AATGAGTCAGGGGTCAACTTCATCTCTGTCAAGGGCCCAGAACTCCTGAA
CATGGTAAAGTTTGTCACAGGAACTGTTTCAGCTCTATTTTCTTATGGTA
ACCCTGTCTAGTGGAGAGGAGTAAAATGCTCAGTAAATGATCTGATATGT
TACTATTCTTTTATTTGTTATCTCCATGAAAAAAGGCTTTTTCATGGAGA
TACTGTTTTGCGTGCGTTTGGTGTTTGTGTGTATGTTTGTGTCACCGGAT
GCTTAAAGGAGAATAACTGAAGAAAGGATCGACAGATTGTCATGTTATTT
GGTACACAGGTAGGTTGGACAGAGATGTACACACTAAAGTGCAAATTATG
CAAATTCAGTGTGTTTGCGTGTGTGTTTGCGTGTGTGTATGTGTGCGTCT
CCGGATGCTTAAAATCAGCATAACTGAAGAACGTGTAGATGGATTGTAAT
GATATTTGGTATGTGGGTAGGTGTTGGGAGGAGAAAGGTCAAGGTCGATT
TTGGGCCCCCTGGTATGTGTCACTGGAACTGCAATGGCGTATTTGTCAAA
ATCTTTTAAGGAGAATAACTGAAGAAAGGAGCGACAGATTTTCATGTTAT
TTACTATGCAGGTAGCTTAGACAGAGATGTATACAATGAATTGCAAATTA
TGCAAATTGGGCTTAATTTGCATAAGTAATGAGGAAAATCTATATTTGCA
GTGTTGTCCATTGCATTGCCATCTGTTACTTGTAGTAGCTATTGCCATCT
GTTACTTGTAGTAGCGAAAGTGGGTCACCCCCCAACAGGTTTGGGTCATA
CCATTGAGCGATATAGAATGGGGGGAACTGGTTTAATAAAAAAAACAAAG
TTTCATGGAGATTTTGGGTCCTAAGACTCTTGTTTTGTTTTGCTCTGCTT
TGCTTTGCTTTGGTTGCGTATGCTGATTTTGTTTCTAACTATGACATATT
TTTTGTGTGCTGCAGTATGTAGGTGAGAGTGAGAGGGCTGTGAGGCAGGT
GTTCCAGAGAGCACGCAACTCGGCACCTTGTGTCATCTTCTTTGACGAGC
TGGATTCCTTGTGTCCCCGGAGATCTTCTGCTGGGGAGGTGGGAGATCTG
TACTGTTGTTAACACTGAAAGTGTCAGGCACAATTTAAGTTGCCCTGCCA
ATACACAACCATGCATCTTAAGGGATCCAAAATGTATTGCAAATTTTCAT
AGCTTGAAAATAAATTATAAAGTAGCTGTTAAGAAACCAAGTTTTTGCAT
TGAATAGTGTAATTGAGTCAAACATGCATATGACTTGAAACAAAACCTTT
TAAATGTATATGCTGCTGTATTTTAAGCTAGAGTGTTGCAGTCAAATCGT
ATTGTTATGTCAAGAAGGTAAATTCAACTTTTTTAATTATTAGCCTAATA
ATTAAAAAAGTTGAATTTACCTTCTTGACAAATAGCTATGATACCCTTTT
ACTTTGTGTACTAATTCGAAGACATCCTGTTTTGTACAGTCCAGTGGTGC
AGTCAGAGTTGTCAACCAGCTGCTGACCGAGATGGACGGACTGGAGGCTC
GTAAGCAGGTCTTTATCATGGGCGCCACCAATAGGCCAGGTCAGGAACTG
CAGCTGCATTTCTTTCAAACAGTTCAAGTTTATATTGGCACAAACCACAC
AAACACACAAACTGAGAAATACTAATAGTATATTATTCCTTCATATTGAA
CAACATCTTCTTACGTTGATTAGTACCATACTTTCTTTGTGCAGATATCA
TAGACCCTGCAGTGCTGCGGCCAGGGAGGCTGGACAAGCTCCTGTTTGTT
GGGCTGCCTAATGAAGTAGACAGGGAAGCTATTCTCAACACTATCACAAA
GGTCTGTTGTAGCTGGCCTTTTATGAATAATGGTTTCCACCAAGTGTATC
TCTGATTCTGCTACGTATACCTGCCCTCTGAAACATGAATTTATTGTAGT
TTAAAATGCTTGATCGACTCAAAGAAAGGAGTTGTGTTAAATTGTCTTTG
CTTGATCACTGATATCTTCTCAATCTTACTATTACCCATGTTGTCCCCAA
AATGTCAGCATGGCACCAAACCTCCCATTGATGGGGATGTCTGCCTGGCG
TCTATAGCGAGAGATGCTCAGTGTAACAACTTCACGTATGTACTGTCTTT
TGCATATTCTTCACCTTGTATCTAATCATTATCTATCATCCTAAGTGTTC
ATCATTGCATAACAGTCACTCTAAAAGCTTGTGGTGTCAGCGTGCTACCA
CAGACAAAATGCATTAGCCTGTAAGCCATGAATGTATTTTTGTTAAACTG
GTTTACCATTATGTAATACGACATGCCGCCAAAGACTCCAGGAAAGCACA
TGAAGTGACCTGTGCCTCAGTTATGTAACAGGCTCCTTTGATGGCACGTC
TTTGGTCCTAACAAGAGCTTAATTACCTTTCCCCCAAGGAGCAATTTGCA
TGATGCAGTTCTCCTTCTGTCAACATCATGATGTTTGGTAAGGCATCAAC
CAGCCAGACTGCCTCTTAGCTTCATTACCTTATTCAATTGAATAGTGAAC
TGTGAACATCTCATTAGCCTTCCATTTGATAACTGTTGTTAAAAACTGAT
AGTGTGTTAACTGATAGTGTGTTAAGATTATATTCCACTGTTTAACTATC
CTCATAGATAATATGAGCTAGTCTAATATCTGTTCACAGCTGTTACATTC
TGACAGCGGAATTGTCCCGATGTTGTTCTCCCCCCACAGTGGTGCAGACC
TGGCGGCTCTGGTTCGCGAGGCTGCCATGAGCGCTTTACGAGAGTCTGTG
GTGCTCTCAGGGACAGCGCCTGGCACAGACTTGGTTTCACCTGGTGATAT
CAGGATCAACCTACAACACTTCAACAAGGCATTCCAGAAAGTCAGGCCTT
CTGTTTCAGAAAAGGTGCATGGCCACATGATACATTTTCTTCTTATAAGA
AAATCTCTGAAAANCTAAAATTGGTAGCAGGGTAATGTAGGTGTTATCTT
CAGCTGTCAGCTGATGATTTACAGATGGCCACATGCTCGCCAATTGACAC
ATAACCCCTTAGGCAGCATGCAGCGCACACTGTGGGGGATTAGTGCAGGA
TTCATCAGGCTGAGTTCCAACTGCCGGCCCTGCTCCCCGGAGGATTTGTA
AATGACACATGATTATGAGCAATTGCAGCTTGTCATTGCATTGCCTCAGC
ACCTGCCACTGAGCCAGTTTAATTACGTTTTCTAGCATGGTGTGCAAAGG
CAATGGCAATTTGTAATCCTTCACTATCGCAAATTTAGATTGTGGATGTT
CCAATTTCAAATGTAAACATCAGCTGAATCTACATGTACTACACATTACA
TTTATGACATATCATTCTTTACTTGTAAAAAGTCATGAAAATTTACGAGA
TCTAGATCCCTGGAAGCAAAACATTTAAGCTTTCTAACTGTCAGGTTCTA
CTGTAGTTGAGCATAGAAAAATCCTCAGGCATTTGTGCACAAGGAACACT
AGTCTGCAATGATTATCCGTTTTTTTTCCGGTTGGTCCTTTCTGTTGAAC
GTCTGTAATGTTTGTCCTGTTTGTTTATTTTGGTCCTAAGTACGTTCTTT
CTGCCTTGTTCTGCAGGATCGAGCCATGTATGAGAAGATGTGGGTGAGAA
TCAGACAGATGGTGTAGGGGACTTCACAAATAAAGATACATTGTCAAAAT
TAATAGAGAATAAATGACAGATATATTAACATTTCCTGTACCTTATAGTT
ATTGTGACTCATTTGGCATTGGGGAAACATACTGTAAACCTTTGAATGTC
CATGGTCGTTTTATTTTTTAGGTTTTCACCTGTCCACCTTGAATTCATGA
CACCACAACTATGCGTTTCTAATCTATTACAGTAACTGCAGAATTGTTTC
AGCCACGCACTAAAGACATTGTGAAAACCTTTTTCCCCTTCTACTGTGAA
ATTCAGTCCCTGCAAAAGTAAATGAATTAACAGTAACTGCCATGTACCTT
ATCCATGTTGAAATTAGCAAGTAAAACACTTTCTTTTGGTTGTGCAATAT
TTTAGTACTGATACAAGACAACTACCAGTACTCTAAAATATATGCTTAAT
TTCATCCATAGTGCTGTAGTTATGATAGAATAAAAAAATTCACAACTGAC
TAACAAATGTTTGTTTTATTTACATTGGTTTTGTTGTATTTACAAGGTAA
TATTACGTGATCCGCGACATGCACGGTAAGGTTATCTGAGATGTACATAA
TACGAGAGTAAATATTATTCATAGTAGCCCTACATAAAGGCAAAGTTCAT
GCATAGTTTCTCC

Coding sequence (CDS) from alignment at Sc0000230:154519..162581+

>BlTCONS00113638 ID=BlTCONS00113638|Name=BlTCONS00113638|organism=Branchiostoma lanceolatum|type=CDS|length=1740bp|location=Sequence derived from alignment at Sc0000230:154519..162581+ (Branchiostoma lanceolatum)
ACTCCCAGTTCACTTCTACAAGCAAATGATAAACTTGGTTTATCCACTGC
AAAAGACATTGATGATAAAGATACCAGCAAAGATGTTTCTAAAGATAATG
TAGACAGGAAGAAAGAATCTACAAGATGGACATATGAGGAAAAAAAGGCA
GATAAAACTCTTCAAGAAGAGGCAACTCCAAAGAGAAAGCTGAAGAGAAA
AGCAGAAGAGGAGACTGATGGAGTTGGGAAGAAAAGGAAAGGAAACGGTA
CAAAAGGTCCAGCTGTCCAGAAATCTACAGTCAAGTTTGCAGACATAGGG
GGTATTGAGTCTTGCTTACAGGAGGTGTGTAAGCTGCTGATTCACCTGCG
CCACCCTGAGGTGTACCAGACGTTAGGAGTCACCCCACCCCGGGGGTTCC
TGCTACATGGACCCCCAGGCTGTGGCAAGACTCTGCTGGCTAATGCAATA
GCTGGGGAGCTGGAGCTACCCCTGCTGAAGATTGCTGCCACAGAGATTGT
ATCTGGGGTGTCTGGAGAGTCTGAGGAGAAAGTCAGGGACTTGTTTGAGA
AAGCCGTGGCTAGTGCCCCCTGTATCCTGTTCATAGATGAGATTGATGCC
ATCACACCTAAGAGGGAGACAGCCCAGCGGGAGATGGAACGGAGGATCGT
GGCTCAACTTCTCACCTGTATGGACGATCTGAGTGCCAACATCAGTGCCC
ATGTTCTGGTAATTGGAGCCACCAACAGACCTGACTTCCTGGACCCAGCT
CTGAGGAGGGCAGGCAGGTTTGACAGGGAAATCTGCATGGGCATTCCTGA
TGAGAGGGCACGGGAGGGGATTCTGCAGGTTCTGTGCCAGAAACTGCGGC
TGTCTGACGGCTTCAGCTACCGCCAGCTGGCTCACCTGACACCTGGCTAT
GTGGGGGCTGACCTCAATGCCCTGTGCAGAGAGGCAGCCATGACAGCCAT
TAACAGAATTATTATTGAACGTGAAGAGGAAGCAAGAAAAAAGGGCAGTG
AGGTGACTGTTACAGGTGCAGATGTTAATGTGGCACCTGATGCAGGTACT
TTACCTTTGGAAGCGGATTCGGGTACTTTACCTGTGGAAGCGCCTGTACA
GACAGCAGACACAAGGATATCAGTGCTGAGTTGGTTGAAGGATCAGCCTC
CACTGACACAGGAGCAGCTGCAGAACCTCAGTATCCAGATGGAAGACTTC
CAGGTTGCCCTTTCCACTATGCAGCCCTCTGCTAAACGAGAAGGGTTCGC
CACCATCCCTGATGTGACCTGGGATGATATTGGTGCCCTACAGGACATCA
GGGAGGAGCTGACCATGGCCATACTGGCACCAGTGAAGCACAGGGAGAAG
TTTGAGTCCCTGGGGCTGGTGAACCCCCCAGGGGTGCTGCTGGCTGGGCC
CCCAGGGTGTGGGAAAACTCTCCTGGCCAAGGCAATTGCTAATGAGTCAG
GGGTCAACTTCATCTCTGTCAAGGGCCCAGAACTCCTGAACATGTATGTA
GGTGAGAGTGAGAGGGCTGTGAGGCAGGTGTTCCAGAGAGCACGCAACTC
GGCACCTTGTGTCATCTTCTTTGACGAGCTGGATTCCTTGTGTCCCCGGA
GATCTTCTGCTGGGGAGTCCAGTGGTGCAGTCAGAGTTGTCAACCAGCTG
CTGACCGAGATGGACGGACTGGAGGCTCGTAAGCAGGTCTTTATCATGGG
CGCCACCAATAGGCCAGCATGGCACCAAACCTCCCATTGA

Gene-mRNA-Prot

The following exon feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
BlTCONS00113638	BlTCONS00113638-protein	Branchiostoma lanceolatum	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Sc0000230	genome	Sc0000230:154519..162581 +

Properties


Property Name	Value
GeneID	BlCUFF055739

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BlTCONS00113638 (mRNA) - B. lanceolatum