|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at Sc0000229:265884..272554- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BlTCONS00113567 ID=BlTCONS00113567|Name=BlTCONS00113567|organism=Branchiostoma lanceolatum|type=mRNA|length=6671bp|location=Sequence derived from alignment at Sc0000229:265884..272554- (Branchiostoma lanceolatum)
GGCGGCCAGAAGGGGACCAGCTGGCCTGTGTTTTCTGGCTGCCATTGTGA
ATTCTAACCAGTGAGTGAGACTCAAAAGCTAAGCATATCTCCTGAACTAC
TGTTTTCAGGTCACCATGGAGTCCCCCTGAGTCAAGGTACTGATAGCTTT
TACATGTATATCATTATGTTGCTCTTTTGAGATAGAAACTGCAAGATTTG
ATACCTGGAGGAATCATGAAGATCACTATGTCTATAGTCAGTGGTTGGAG
CCTTCCAAAGGTCAGACCCAGTGCACAACACCATCTACACAAGACTGTTA
TTTGTGACAGGGCAGAACATGTCACAACTAGGGATGGAAAATCTGCTCAA
TGCAGACATTTTAATGTGTGTACATTGAGCTATAAGATATTGTATTTGTA
CTTTAACTGTAACATGTATTATGTATGAAAATGCTTGTTTTTTTGGCATG
GCTGGGTCAATAGATCAGTAGTTGGGGTAATAATTTGTAGGTCCCCAGTC
TGTAGTGTAAAAGGACAGGTTCAGTCCAAGCTGTGTTTTCATGTCATTTC
TGCTGAAAATTTGCCCTGGGCTTGCTTCAGACAGAAATGATCTGTCAATG
ATTCAGTGTGTTTATCACAAATTTGGACAACTGTTGATTTATCAGATGGC
AGGCAGCACAATTGTTTTTGTATAAGAGGTAAATGCTGACCTATGACCAT
CAGTTATTTGCCATCAGACATGTCCTCCTCAATCCTGATAACGTTTTAAA
TGTCATGACCTGTGGCACCTCCACAGCCTCTTCTTCATTCATATTCATTC
CCCTACCCAGTTAAAGCCAGCACAGGTAATAGATAGCGTCCATTCCGCCA
TTTATGATTTCACCGGCAAGTGGCGACAGGATGAGCTGTGACACAAAATG
GCCTGTTAGGTAACGGGAAAGCTGTCGTCTGTTGGTGATATAGTCCATTC
TGTTCGTTATCTGTGCTTATCGGTTCTTGGTGTATCAGGAAATCTAGAAA
TCCTGATTCATGTCGCTGCAGGCTGTTACAATGCAGCTTGATCAGCAGCA
GTTGAAAGATATTGATGTGCATGACTTGACATTTTTGTTCGCCATCAATT
GCTCTCTGCTTAAGTGCATTGTATTCGTACAGATTGCTATTTTGTGTTGA
TTGACCACACAATTTAATTACATCAATGATTCTAAATCATTTTCGATACC
TGACTTACAATGAAAGATGTTTGCTTGGTGTAGCTAGCCAATATATTTAT
GCATTTTGCTATAACTTGTGCTGATCATCTATTATTAAGTATTTCATAGT
TTTTATCATGCAACTTGTAGCATTGTTACCATGCTCTATTTTAGGATATC
CAAATAACATGTCTTTGCCTCTAGTCAATTTGAAATGTATGGGTTGGGGG
GGAGGGGCGTGCGAGTGTGGGGAGTGGGTTGTCCATCAGCATATCTTGTC
TGACTACATGTGGGCTGTCCTGATCAGCAAAATGCAAATTAGTAATTTTG
ATATCACTGGAGAGTTTGACCACTTTGTTATAATTTATGAAATTCTCCGG
TAATTGGCTAGAGGCAAGGATAATCAATATTTGTTTCCCAATGTCTGTCT
CTTCAAGATTATGTCTGAGGTTCAATATTGTTAAAAGTGATATTTCACTT
TCTATGGCAGCTTTACTTAGTATTTTCATATTCCTTCACTCAGCATCTGA
TCCATATATATGGCCTCCGTCGGTCAGTATTGACCATGGTAAAATCCTAA
TTCACAACAGTCCTACAGCATCGACTATGGCTAATCAGCCCTATACGAGA
ATGGCAGTCTCTGCCACAAAAATCACATCTGTAAGCTGACTCAGTTCTGT
TGCAAAGCTCTTTTCTGTGGATCTGCTTTTCTGATCCACTGCATAGTTAA
CCATGTTTGTCACAGAAATAACCAACCACTGTTTCTACCTCACACAGAGA
CTGAGCCTGACCTGGCAGGGTCGCTGTCCCCCCCGCGGAACAACGTGCTG
TCTCCCACCCGCTCGTCCTTCCCGAAGCATGTCCATACAGTCATGGACGA
CAAGTTCAAGGAGATCGCCAACGACCTGTTCAAGCGAAGTCGCCACGAGT
CGGAGACCTTCCACCCGGACCTCACGGCGCCGTACGAGTACCCCGACCAG
TGTCCTCTGGAGTCGGAGGACGAGAAGAAGAAGCGTCTGGAGCGACAGAT
GAGCCAGTGCAACGATGTTAAGATTAAGTTTAAGTGAGTGGCAGTGCCCT
TCCCTGGAGTTTCACAGGCTGTAGCAAGTTGGATCACTCGTAATGAAGTG
GAGAGTAAAATTGGAACATTCAAAACAAGAGCATATTAATTATTATACCT
AAGAGCCTCCTTGGTTGAACCCATGAGGGACATGAAATGAAGTGTCTACA
ATACAAATAATTCTAGTCCTAATCCAGGCATGGTGGTACGATGACATGGC
ATGGGGTGCTACCACAAGAAAACAATGGAAGAAGAAAAACCTATTTTACC
GTACCACTGCACCAAAAATAGGTGACCATTGTTGGAAAGAATTTAGCATC
ATTTCCTTTGAATGACAGGTATTGTACAGGAGGACTCATTATCCTTACAA
ACAAAGAAATTCTGTACAACCCTGTCCATTACATGGAAATCAGTTCAATA
GCTTTCTCTTGACTGAGTCTTACAAAATGAGAGAATATAAAGAAGGAATG
ATTTTCATTAAAAAACTACTTGTACATCAGAAGAAAATTTTCTTAATATT
TTTAGTGGAATTACCCCAAAATAACACATCTTTTTCAAAATTTGTGTTGT
TGTGGACATATACATGCAACAGTTTAAGACATTGGGCTAAGCCTGCATTC
CTGATAAAGACAAATGTGATCTGTTAGCTATGAGTAAACATCATGAGTGT
TCCAGCCTTGCTCAGCCTGACAACCCTGGGCATTGTGACCTGCCTAACCT
GTGTGCAGTGCTGCCTTACACTAACCCTCAGTTTGATGTGTTCTTATCCC
TCTCACTATATCTTCTCAGCCACTTTACTTGTCGTCCCTAGCAGGTTGGG
TTAGGTATAAACAAATAGAATCATCAGGACCATGGAAATTTAAAATGCTA
TAAATTCAAGTACATGTACATATATCAAATTTTACCACTCATTTTGACTG
GGCTGTCAAAGACCTGGTCTTCTTGAAAACAGCCTATTTGTAGTCTAGTC
GAAATTTATTCGGAAAGATAAACAATATTTAGGTTTGAAAAACTTATTTT
GGTATCCTCATGGAAAATTGCATGAAAAGGACTTTCAGACCAAAAAAAAT
GTACTGATGTGTTAAGATAGTGTTAACTTAAACATATGAAATATGAATAA
TGCATTGCAGATTGTACAATCATGTACTACATCGTAATTGTTAATTGTAT
TAGACAGGATTGTCATAAATCGCCTAGTAGTACACACGACAAGCTGAAAA
AATTTCTGGTGACTGAAATTTTCCATGTTGTTTCCCCTACCACTACTTGC
ATGCCATGATTTGCTGTGTGCTGTACAGGGGTTTGGATGGAAGGTAAGAA
ACAGACAGGCAGATATTGGCATGTCCTAACCAGTCAGTAGGTTCACATTA
CAGTACTTATGTTTAGCATTGTTTATTTTTTTGTTTTCATTTATTTTGGC
AACACTTCTAACAATGCAAGAAGCCACTACATGAATATTCAAAAACTGGA
CTAACCATATGCAATGGCCAGACTTTCCACATGTTTGTGTCTGGCATATT
GTGACCAGCAGATAACCCGTTTTTGTTGGACATACATGCATGTAACACCC
TGTGCGTATTTCGCCATCTTTTTTTTTAAACTAAAAGGTTGAAATTGTGG
GCTGAAATTTGTACAATCATTGACACATGAAGATCTACATTAGTACTGTT
TTGTAGCCTTATTTTCTTGTTGCTTGCAGAATGGTAGACACATCACCAGT
CGTGTAATCATATGTCTGGTGAAATTACTGTGTAGCTGTAGACTCTGATT
CAACGAGTACCATTGCAAACACCAACATTTCTAATTCTACTACTCTGCAT
TCCAGTCTATCACAAGACTATACAACACTGCATGCTAACCTAAACTCCAC
TGTACTAAGTCTTCTTCTTTAGTACTGTAATCTTTGTAGAAATTAATGGT
TCCATGCTAGTGAAAGATGTGCATGATTTTTTTCTTAGTTTTGTTACTAC
AACTTATTGTAGATTCTTGTTGCATTCAATGTATGTGAATATTTTTTGGC
ATACTTCAAAGGAATGAAAAGGGAAGTGATGAGACTTTAAGCTTTGAAAT
TAACATGAGTTATCTAACATATATTTGCCATGAATTATGAACTCATCATC
ACAATTCACCTTACAAACCACCATGTTACAAATCATAACACATCTTTCAT
AGCATGACCAATATAGCAGTTTTGAAGCGTCAAGTCATCATCGGATGGAA
TGCCCATGACGAGGTGACGATGAACGCTGGTTTGACGTGATGCTTGTTTC
TTTAGTTGTGTGGACTAACTTTGCGGTGTGTTTTCCTCCTCCTATCACTC
CCCCTCCCCTCCTCAACATCTGAAGGTACGACAATAATGACAGGGAAGCT
AGAACTACCCGCAAACTGAAACTCAAAGATTTACAAGAGTGAGTGCCTGA
TTCCTTATCATAGAGGACAGATAATTAGAATACTTTTACAGGTAATGAAA
GATCTGAAGAAGTAACATATAGATAACTCTTCTAATGCAACTGAAGTCTA
TTTATACATTTTTAAGTTATACTTTACTAGGTACAGTTAGATTTTCAGTC
TAACATATTATCTATGTTCTTATCAATGCTTACATCAGGGAGCAGATGTA
CAAGTCCACTAATGCTTTTGTTATAATAGAGACTTGTCCTGGTGACAATC
CCATGCAAAACTAATGCTACATATGTATAAACAAATGATTATGAATGGAC
AGGATTATACTATGGGGCCTGGCTAGATTTCTAGAAAGAAGGTTTCTGTT
TTCCTCATCAAAGCCTACCTCTTCCATTTTTGTGCCCTTTTTAGATTTTG
CCTTTTTCTCAAATTGCAGATAATCTGTGCTAATATTAAGTCTGAATCAT
AGTAAAATAAATCTGTTAAAATAGACAGGCACCAATGGATACAAACCAAA
ATGGGGCCACCTAACCAAAGATGTAATCAATTATTTGATACCTTATTAAG
TTATCTATTTCATACTTATTCATGTGCACACCTTGTAATCTGGAGAAATT
ATTCCATACTTTTAGAACGACCATGTGCATAAAAAAGGGCCAATTTCCTA
TAATTGCATGTTCTGCATGTTACCATGGTGTTCCATATGGAGCAGAAGGA
AGCACAGTACTTGTGGGAAAGACTGTATCTGCTCGCCCGCCTTTTCTATA
GAAACAGTAACATATGGTCTGGTATTTTAGAATCTGCTGTCACGGTACAG
TCATTGCAAATCAAGCGCATCAACATCTTAAAAATCTTAACATGTTGAAA
ATCATGTGTCTGTGACAGAGACACTGCAAACATTTAGTGATTATTTAAAA
TGACCAGTTTCATAATGTTCTAGACATTTTGTAATTTGAGCCATACCTTT
ACAACCCGGCCCAACTTATGAATATGTCTACGGAGTTTCATAGATTCTTA
TTGGATCCAGCCATCTGACACCTGTTTTTTTAGACCAATGTTGAAACAGA
TTATTGAAGGTCAGGTACCTCCTAGATGCTGAGAACCTAACCACATGTAA
AATTGCATGCAAAAAGTGCTAACCCAGCTTGTACACTAGAGGTGAAATTT
GTTTGGTTACTAAATTTTTGAATTTTTCTGCGTATGTGGTACATGTAGTG
TTATAGGAATGTTTAGTATGAGCTGCTATTTCAGTTCTAACGTAACTATG
GATTGTGTACATGAATAAGTGCCCTTTGTTGCTTTCACCCAAAGGGCATT
TGGCATTAGTTGTGCACTTTATGAGTTATACCTGGGTCTCTGTAGTGGCC
AGGTAAGCCCATAATACCTGGTACTGCACCTGGCGAATCACTTAAAGTGA
CAGTGATCAGTGCAGCCATTAACACCCCAGAGTCTCCCAGTAAGCTATCT
GTGCACGTTAGTCCCAATGGAGCTGACAGTAATTCTTTCATTTTGAAACA
CAAAGTGGTTTTCCATCCCATCTAGAGCCTTCAGTAATGTTATGCACATT
TGTACTGTATAGGCAACTGGAGAGGCAAACATCAAATGCAAAAGTCTTTG
GAAGTTTAACTGTCACTTGTACTGTGTCTATTAGTACAATTATGTAAATA
CTGCTCTTCCAGATAAGGCTATTGTAAATACAAAATGGTGCTCAGTTGTT
CATAAAATCTGGTAGATTGACATATTTAGCCCGCATGTACAGTATACGCT
GCAGTCAGGTAGTTAAGCAAGCATTCACACCCATCCCCTTGTTGTGACAA
CACTTCCATATTGAAAAGTGTGCATTTAAAAATCAATCCTTCTTGACCGT
ATTGTTCCCACCAGGCACCAACAGAATGTGAAATCCCCAACGTTCTTTGG
GGCCACCTTGACGCCCGCAGAATTCACAAAGGAAGAGGAGGAGGTGTTGG
GACAGTTCCAGAGAGTGTCCATCACTGGGGATGAAACCACTGGGGCAAGT
CTTCTCATTGGGAGTTTGAAC Coding sequence (CDS) from alignment at Sc0000229:265884..272554- >BlTCONS00113567 ID=BlTCONS00113567|Name=BlTCONS00113567|organism=Branchiostoma lanceolatum|type=CDS|length=426bp|location=Sequence derived from alignment at Sc0000229:265884..272554- (Branchiostoma lanceolatum)
ATGGACGACAAGTTCAAGGAGATCGCCAACGACCTGTTCAAGCGAAGTCG
CCACGAGTCGGAGACCTTCCACCCGGACCTCACGGCGCCGTACGAGTACC
CCGACCAGTGTCCTCTGGAGTCGGAGGACGAGAAGAAGAAGCGTCTGGAG
CGACAGATGAGCCAGTGCAACGATGTTAAGATTAAGTTTAAGGGTTTGGA
TGGAAGGTACGACAATAATGACAGGGAAGCTAGAACTACCCGCAAACTGA
AACTCAAAGATTTACAAGAGCACCAACAGAATGTGAAATCCCCAACGTTC
TTTGGGGCCACCTTGACGCCCGCAGAATTCACAAAGGAAGAGGAGGAGGT
GTTGGGACAGTTCCAGAGAGTGTCCATCACTGGGGATGAAACCACTGGGG
CAAGTCTTCTCATTGGGAGTTTGAAC
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| BlTCONS00113567-exon-Sc0000229-1564993656:272419..272554 | BlTCONS00113567-exon-Sc0000229-1564993656:272419..272554 | Branchiostoma lanceolatum | exon |
| BlTCONS00113567-exon-Sc0000229-1564993656:270322..270607 | BlTCONS00113567-exon-Sc0000229-1564993656:270322..270607 | Branchiostoma lanceolatum | exon |
| BlTCONS00113567-exon-Sc0000229-1564993656:269012..269026 | BlTCONS00113567-exon-Sc0000229-1564993656:269012..269026 | Branchiostoma lanceolatum | exon |
| BlTCONS00113567-exon-Sc0000229-1564993656:267917..267979 | BlTCONS00113567-exon-Sc0000229-1564993656:267917..267979 | Branchiostoma lanceolatum | exon |
| BlTCONS00113567-exon-Sc0000229-1564993656:265884..266040 | BlTCONS00113567-exon-Sc0000229-1564993656:265884..266040 | Branchiostoma lanceolatum | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000229 | genome | Sc0000229:265884..272554 - |
Properties
| Property Name | Value |
|---|
| GeneID | BlCUFF055717 |
|
