BlTCONS00113549 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00113549
Unique NameBlTCONS00113549
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000229:166837..170702-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00113549 ID=BlTCONS00113549|Name=BlTCONS00113549|organism=Branchiostoma lanceolatum|type=mRNA|length=3866bp|location=Sequence derived from alignment at Sc0000229:166837..170702- (Branchiostoma lanceolatum)
ATCTCTCACACCTATAGTGACGAGGCTATAGTGATAGTGAACCACCAGTC
CACAGCTGACGTGGCCACCCTTATGGGAGCCCTCCAGCACAAGGGACCAG
TCGCGCGGCGCATGATGTGGATCATGGACTACATCCTCCTGTACACTAAC
TTTGGACTGTGTGCATGGGTACATGGGGACTTCTTTCTGCAGCAGGTACG
CTTATAACCCTTAGTAGCCTAACCCTGTCTCATAGTGATTTCTTTCACTC
TAAAAAGCCAAGTATTACATATATTTATATTGATACAGGGGCAGGAGTAT
CGTGAGGAAATGCTGAAGTCGCTGAAGGATCATCTCAACACCAGATATTC
CAGCAGGAATCATCAGTGGATCGTGCTGTTCCCAGAAGGAGGGTTTCTTA
GGAAGAGACGAGAGAAGAGTCAGAAGTGAGTAAGATTATGTAACCCAGCC
AGTCAAAGCAAAAATAAAGGAGAAGATCATCAACTCACTAGTTTTTGTTG
TTTGACATTTTAAGCCAGCATCCCATTCATTTTATAATAGACTGTTTCTT
ACGGTGTCACGAAAGAGATATATTTTAGACCAAGTAACATTATACAATAC
GAATTATGTCTTCATGATACGTTTTCAACCCTTGTACGCTCACAGGTACG
CAAGAAAGAACAACCTGCCTATCTTACAACACGTGCTGCTTCCCAGAACG
GGAGCCATGAAAACCATCCTGGACAATGTTGGCCCACCTCTGGCCCACAC
CAATGGGTCACTACAGGTGTTATGTAATAACGGCACCGCGCACCACTCGA
ATGGTAAGTGTTAGTCTCCAACCAGACCCAATAGATTGCAAAGACCGTAT
CCAACTGGAAGAAGGAGCTTGTAATGCAAAACGTACTTCCTCTGCCAGTT
TGATACGGTCTTTATGCAACCTATAGATCTGCTTGGAGATTAGGTAAGTG
TGACACTGTGTAGTCTCTGCACGTCTCCGGGAACAGTTGACTACGAGACA
CGACTGAAAATTAACTTGGTTTCAACTTTCGCCAAGTACTTTTTTCAAAA
GCTTTATGTCAACGTTTGCACGGTTATGGATACAGATCCCACTTATAATG
ATAATCAATTATTGCTTATCTTTAAGGCTAATCGCAAGTAACTAAACAAT
AACGTACATTATCATATAGCCAGATGACGTCGACCAAACAGAAGTTCCCA
TTGAATATCGGTAATGTCACAGAAGTGCCACAAGAGGTGAATAATAAATC
TCAAGTAGTGAATAATGAATCTCAAGAGGTAAATAATGATGTTGATCAAT
CAGAAGGAGATATACACATGACATTGACCAATCAGAGGGACACCCAGAAG
GGAGGAATGATGATGAATAGAGTAGAGTACAGTACAGTAGAGTAGATCTT
AAAATAAAAAAATTGACATGCCAAGATTGCAATGTTATGAAATATTTTCT
GTGGAAACTTTGGTTAAAAGAATGAAATCTGTAATCTTCTGTACGAAAAG
GACAAATGTAAACTTTCAAATGCATTTCTCAAAAATTGGACGAATGTATT
TACATGTTAATTATTAGTCATACAGGAATTTGTTACTCATGGGTCAGTTT
GGATAGGCTATATGATAAAAACGTTATATTAACGACCAGCCTATCCCTAG
GTGTATATGGTGTCATAATGCCTGATCATTTGCTATAAACACCTCATAAA
TCCACCGAGTTCGCGATAGCAAATGCGTTATGACACCATATATACCTAGG
GCCCGGCGGGTCATCAACCCATAATTATCAGTTGCCTAATGTTAATAACC
TAACGTAAGATTCCATATTGATCATTGTTGTTGGGTTTGACTTTTTCTTT
GCAGGAAGCGGAAGGTGAAATGGCATCATATAAAATGTTTAAACATCTCT
CCTCGTCAAAGGTCGTCATGTGAAGTGGATTGTTGACATCACCATTGCAT
ATGAGCACGGCAGACCGCTGGACATTCAGACCCTAACCTCTGGATGGAGG
CCGCCATATCCCACTACACTGCACTACAGGTACTGCAGAGTGCATCTCTC
TAGTCCTTTTATGTGAAATATTGGTCCTTTTTGTTCTTCATTGTAGGTTT
GGACGGAAATTCTGAAAGGGATGCTATATATATAAGAGCTAGGTGATGTT
GGCATAAGGCCATTAAGGGTAACAGGCAATGGCGCTGGGGTAAGGTTATG
GTCAGTTATGAGCCAGCTACTTGCTGTAAAAATCCGAACAGCATATGGTT
TACCTAGTGTTGTATGAAATATGAGCACTCAACACAACTCACCGCGTCAA
TATGAATGATGGTTACGCCCTATCAAACTGTCCCATACAGACATTTCCCA
ACTTCCGAGGTCCCGCGGGACGAGACAGGCCTGACCAAGTGGCTGTACCA
GCGGTTTGCAGAGAAGGAAGAACTCCTGTCCCACTTCTACTCCACAGGCC
GGTTCCCTGCAGGCACGACACGGCCAGGCGTCACAACAACAGATGAAGCG
GTGGAGATAACATTCAGCCCGTGGTGGATGTTGTCTATCCACCTCTTCTA
TTTGTGTTCCACCGCTCTGCAGTGGTATACCGTTAGCGCTATTCTACAAC
TGATCTTGTAATCAGAAGTTTTGGTGTTTTCAAATTGGAAAGAATTTGAT
CAAAGAGCAAGTGAGAGTAAAGTTACAACAGCAGTTATTAAGTACATGTA
CAAGTATGTATAAGTATGGACGAGTGTTTTGGCTATCGCGTAATTCTGAT
CACGTTGCTGTAATTTCATCGCAAGGGTGTACGCACCAGTTATAATTATC
TAATTCATATTCCTTGAATTCAGACAATATTTGTATTGTCGTATATATAT
GATGGCAACCACTCGTATTATCTTTATTCGTATTCAGATACATAGTACAG
ATACATAATACAGATACATAGTACAGATACAAATACAGATCGAGTATGGT
GACCGTGTCAATTGACACGGTAGCCTTCGCGTGAATTTGTTTAAGGTGGA
TGACAGGTTGCGAATCTGAGACCCACACACTTTGGGCATCCGCCATCTCC
AGCGGCACCAATTCGAGGGAGACGTGCTGGTTCTGGTGGGGATGCTTGCA
GCGAGCTGCGGGATGACTCTTACACTCGAGGTCCGCCTTGATAACGCCAG
CCCGTCTGGCGCTGCTCTCGTCCGCCAGTTGAAGACAGCTGCCGTTGGAG
ACTTGTCCCTCTAACTGAGGGAGGAATGCGTGTAAAGTGCCTTTCCCAAG
GGCACAACGTCGGGGCGCAAGTTCGGACATGTCTATGGGCACAACCCTGG
GATTCGATCCCGGGTCCCATTGTTTGACAGCCGTGCGCTCTGCACTTGCG
CCACACGACGCCACTAATGCATATATATATATATGCATTAGTATTGAATG
TATAGATATAGAAACACATTGTATACTAGCAACGTAGTTTAATCTTCGTC
GCTTGTATCACGTGTATGCCTAATGCTTCACTTTATGCTTGTGCATCGTC
ATTAATTGTTGTCAACTTGCAATTAGCCTACGGGCAATAAACTTATCACT
ATTATATTCGAATTCATCTCCAATCACAAGCGGTACTTACAATGTGTTTT
ATGTTGACATGTCGAGTCGTTTCGGGACATTCGCATTTTAGCAAACAGCG
AAATATCGACAATCGAGTAAGTGTACATATCTCACCGGAATAAGTTGCTC
TGTAACATGTCTGCTCACGATCAACGTATACTCAGCCGGGACAGGCGTGA
ACCAAATGTACTAGAAGTTTCCGTTGATTTGCTTAAAATACGACATCCTG
CAACCTCAGTTGTTAAAGATAAATAGAGGACATGCAGGAAAAGCTTCAAG
ACTATTCATGTCGTAA

Coding sequence (CDS) from alignment at Sc0000229:166837..170702-

>BlTCONS00113549 ID=BlTCONS00113549|Name=BlTCONS00113549|organism=Branchiostoma lanceolatum|type=CDS|length=579bp|location=Sequence derived from alignment at Sc0000229:166837..170702- (Branchiostoma lanceolatum)
ATCTCTCACACCTATAGTGACGAGGCTATAGTGATAGTGAACCACCAGTC
CACAGCTGACGTGGCCACCCTTATGGGAGCCCTCCAGCACAAGGGACCAG
TCGCGCGGCGCATGATGTGGATCATGGACTACATCCTCCTGTACACTAAC
TTTGGACTGTGTGCATGGGTACATGGGGACTTCTTTCTGCAGCAGGGGCA
GGAGTATCGTGAGGAAATGCTGAAGTCGCTGAAGGATCATCTCAACACCA
GATATTCCAGCAGGAATCATCAGTGGATCGTGCTGTTCCCAGAAGGAGGG
TTTCTTAGGAAGAGACGAGAGAAGAGTCAGAAGTACGCAAGAAAGAACAA
CCTGCCTATCTTACAACACGTGCTGCTTCCCAGAACGGGAGCCATGAAAA
CCATCCTGGACAATGTTGGCCCACCTCTGGCCCACACCAATGGGTCACTA
CAGGTGTTATGTAATAACGGCACCGCGCACCACTCGAATGGTAAGTGGAA
GCGGAAGGTGAAATGGCATCATATAAAATGTTTAAACATCTCTCCTCGTC
AAAGGTCGTCATGTGAAGTGGATTGTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113549BlTCONS00113549-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00113549-exon-Sc0000229-1564993656:170508..170702BlTCONS00113549-exon-Sc0000229-1564993656:170508..170702Branchiostoma lanceolatumexon
BlTCONS00113549-exon-Sc0000229-1564993656:170278..170414BlTCONS00113549-exon-Sc0000229-1564993656:170278..170414Branchiostoma lanceolatumexon
BlTCONS00113549-exon-Sc0000229-1564993656:169893..170057BlTCONS00113549-exon-Sc0000229-1564993656:169893..170057Branchiostoma lanceolatumexon
BlTCONS00113549-exon-Sc0000229-1564993656:168674..168848BlTCONS00113549-exon-Sc0000229-1564993656:168674..168848Branchiostoma lanceolatumexon
BlTCONS00113549-exon-Sc0000229-1564993656:166837..168362BlTCONS00113549-exon-Sc0000229-1564993656:166837..168362Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000229genomeSc0000229:166837..170702 -
Properties
Property NameValue
GeneIDBlCUFF055711